scholarly journals A Novel Enzyme Portfolio for Red Algal Polysaccharide Degradation in the Marine Bacterium Paraglaciecola hydrolytica S66T Encoded in a Sizeable Polysaccharide Utilization Locus

2018 ◽  
Vol 9 ◽  
Author(s):  
Mikkel Schultz-Johansen ◽  
Pernille K. Bech ◽  
Rosanna C. Hennessy ◽  
Mikkel A. Glaring ◽  
Tristan Barbeyron ◽  
...  
Keyword(s):  
Marine Bacterium ◽  
Polysaccharide Degradation ◽  
Polysaccharide Utilization Locus ◽  
Red Algal

scholarly journals The structure of PfGH50B, an agarase from the marine bacterium Pseudoalteromonas fuliginea PS47

2020 ◽  
Vol 76 (9) ◽  
pp. 422-427
Author(s):  
Benjamin Pluvinage ◽  
Craig S. Robb ◽  
Roderick Jeffries ◽  
Alisdair B. Boraston
Keyword(s):  
Glycoside Hydrolase ◽  
Marine Bacterium ◽  
Structural Features ◽  
Degree Of Polymerization ◽  
Glycoside Hydrolase Family ◽  
Carbohydrate Binding ◽  
X Ray ◽  
Terminal Domain ◽  
Polysaccharide Utilization Locus ◽  
Hydrolase Family

The recently identified marine bacterium Pseudoalteromonas fuliginea sp. PS47 possesses a polysaccharide-utilization locus dedicated to agarose degradation. In particular, it contains a gene (locus tag EU509_06755) encoding a β-agarase that belongs to glycoside hydrolase family 50 (GH50), PfGH50B. The 2.0 Å resolution X-ray crystal structure of PfGH50B reveals a rare complex multidomain fold that was found in two of the three previously determined GH50 structures. The structure comprises an N-terminal domain with a carbohydrate-binding module (CBM)-like fold fused to a C-terminal domain by a rigid linker. The CBM-like domain appears to function by extending the catalytic groove of the enzyme. Furthermore, the PfGH50B structure highlights key structural features in the mobile loops that may function to restrict the degree of polymerization of the neoagaro-oligosaccharide products and the enzyme processivity.

scholarly journals Biochemical and structural investigation of two paralogous glycoside hydrolases fromZobellia galactanivorans: novel insights into the evolution, dimerization plasticity and catalytic mechanism of the GH117 family

2015 ◽  
Vol 71 (2) ◽  
pp. 209-223 ◽  
Author(s):  
Elizabeth Ficko-Blean ◽  
Delphine Duffieux ◽  
Étienne Rebuffet ◽  
Robert Larocque ◽  
Agnes Groisillier ◽  
...  
Keyword(s):  
Phylogenetic Diversity ◽  
Marine Bacterium ◽  
Structural Investigation ◽  
Catalytic Mechanism ◽  
Algal Cell ◽  
Glycoside Hydrolases ◽  
The Family ◽  
Galactose Residue ◽  
Red Algal ◽  
Hydrolysis Of

The family 117 glycoside hydrolase (GH117) enzymes have exo-α-1,3-(3,6-anhydro)-L-galactosidase activity, removing terminal nonreducing α-1,3-linked 3,6-anhydro-L-galactose residues from their red algal neoagarose substrate. These enzymes have previously been phylogenetically divided into clades, and only the clade A enzymes have been experimentally studied to date. The investigation of two GH117 enzymes, Zg3615 and Zg3597, produced by the marine bacteriumZobellia galactanivoransreveals structural, biochemical and further phylogenetic diversity between clades. A product complex with the unusual β-3,6-anhydro-L-galactose residue sheds light on the inverting catalytic mechanism of the GH117 enzymes as well as the structure of this unique sugar produced by hydrolysis of the agarophyte red algal cell wall.

TEM study of a biofilm on copper corrosion

1996 ◽  
Vol 54 ◽  
pp. 220-221
Author(s):  
W. A. Chiou ◽  
N. Kohyama ◽  
B. Little ◽  
P. Wagner ◽  
M. Meshii
Keyword(s):  
Marine Bacterium ◽  
Culture Medium ◽  
Copper Alloys ◽  
Pure Copper ◽  
Localized Corrosion ◽  
Natural Seawater ◽  
Copper Corrosion ◽  
New Approach ◽  
The Past ◽  
Copper Tolerant

The corrosion of copper and copper alloys in a marine environment is of great concern because of their widespread use in heat exchangers and steam condensers in which natural seawater is the coolant. It has become increasingly evident that microorganisms play an important role in the corrosion of a number of metals and alloys under a variety of environments. For the past 15 years the use of SEM has proven to be useful in studying biofilms and spatial relationships between bacteria and localized corrosion of metals. Little information, however, has been obtained using TEM capitalizing on its higher spacial resolution and the transmission observation of interfaces. The research presented herein is the first step of this new approach in studying the corrosion with biological influence in pure copper.Commercially produced copper (Cu, 99%) foils of approximately 120 μm thick exposed to a copper-tolerant marine bacterium, Oceanospirillum, and an abiotic culture medium were subsampled (1 cm × 1 cm) for this study along with unexposed control samples.

Interactive toxic effects of agrochemicals on aquatic organisms

1999 ◽  
Vol 40 (1) ◽  
pp. 357-364 ◽  
Author(s):  
A. Kungolos ◽  
P. Samaras ◽  
A. M. Kipopoulou ◽  
A. Zoumboulis ◽  
G. P. Sakellaropoulos
Keyword(s):  
Daphnia Magna ◽  
Marine Bacterium ◽  
Methyl Parathion ◽  
Vibrio Fischeri ◽  
Interactive Effect ◽  
Algal Growth ◽  
Aquatic Organisms ◽  
Interactive Effects ◽  
Selenastrum Capricornutum ◽  
Toxic Compound

The effects of three common agrochemicals, lindane, methyl parathion and atrazine, on crustacean Daphnia magna, alga Selenastrum capricornutum and marine bacterium Vibrio fischeri were investigated in this study. Methyl parathion was the most toxic compound towards all three organisms, while lindane was more toxic to Daphnia magna and Vibrio fischeri than atrazine, and atrazine was more toxic to Selenastrum capricornutum than lindane. Among the three aquatic organisms, Selenastrum capricornutum was most sensitive in detecting lindane and atrazine toxicity, while Daphnia magna was most sensitive in detecting methyl parathion toxicity. The interactive effects of the pesticides were also investigated. The interactive effect between lindane and methyl parathion on survival of Daphnia magna was synergistic, while the ones between lindane and atrazine and between methyl parathion and atrazine were generally additive. The interactive effect of the three pesticides applied together on Daphnia magna was synergistic. The interactive effect of the three pesticides on the growth of Selenastrum capricornutum was antagonistic with few cases of addition, while the effect of all the three pairs of pesticides on algal growth was also antagonistic. The interactive effect of lindane and methyl parathion on Vibrio fischeri was additive.

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