scholarly journals Examining Collection Biases Across Different Taxonomic Groups: Understanding How Biases Can Compare Across Herbarium Datasets

2019 ◽  
Vol 15 (4) ◽  
pp. 47-53
Author(s):  
Jordan Williams ◽  
Katelin Pearson

Specimen-based data are an invaluable resource for an increasing diversity of scientific fields, including global change biology, ecology, evolution, and genetics; however, certain analyses of these data may be limited by the non-random nature of collecting activity. Geographic, temporal, and trait-based collecting biases may consequently affect the understanding of species’ distributions, obviating the need to determine what biases exist and how they may impact further analyses. Trait-based biases were examined in herbarium specimen records of two abundant and diverse families (Asteraceae and Fabaceae) in a well-collected and digitized region (California) by comparing geographic-bias-adjusted simulations of random collections to actual collecting patterns. Collecting biases were fairly similar between families for a number of traits, such as a strong bias against collecting introduced species, while seasonal collecting biases showed a peak in activity in the Spring for both families. However, while there was only a dip in the fall for Asteraceae, Fabaceae were seriously under-collected for the majority of the year. These results demonstrate that significant collecting biases exist and may differ depending on the dataset, highlighting the importance of understanding the dataset and potentially accounting for its sampling limitations.

Author(s):  
Domenico D'Alelio ◽  
Salvatore Rampone ◽  
Luigi Maria Cusano ◽  
Nadia Sanseverino ◽  
Luca Russo ◽  
...  

2018 ◽  
Vol 374 (1763) ◽  
pp. 20170392 ◽  
Author(s):  
Carrie Andrew ◽  
Jeffrey Diez ◽  
Timothy Y. James ◽  
Håvard Kauserud

For several hundred years, millions of fungal sporocarps have been collected and deposited in worldwide collections (fungaria) to support fungal taxonomy. Owing to large-scale digitization programs, metadata associated with the records are now becoming publicly available, including information on taxonomy, sampling location, collection date and habitat/substrate information. This metadata, as well as data extracted from the physical fungarium specimens themselves, such as DNA sequences and biochemical characteristics, provide a rich source of information not only for taxonomy but also for other lines of biological inquiry. Here, we highlight and discuss how this information can be used to investigate emerging topics in fungal global change biology and beyond. Fungarium data are a prime source of knowledge on fungal distributions and richness patterns, and for assessing red-listed and invasive species. Information on collection dates has been used to investigate shifts in fungal distributions as well as phenology of sporocarp emergence in response to climate change. In addition to providing material for taxonomy and systematics, DNA sequences derived from the physical specimens provide information about fungal demography, dispersal patterns, and are emerging as a source of genomic data. As DNA analysis technologies develop further, the importance of fungarium specimens as easily accessible sources of information will likely continue to grow. This article is part of the theme issue ‘Biological collections for understanding biodiversity in the Anthropocene’.


2018 ◽  
Vol 24 (9) ◽  
pp. 3873-3874
Author(s):  
Christoph Müller ◽  
Gerald Moser

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