scholarly journals Using artificial intelligence to assist radiologists in distinguishing COVID-19 from other pulmonary infections

2020 ◽  
pp. 1-17
Author(s):  
Yanhong Yang ◽  
Fleming Y.M. Lure ◽  
Hengyuan Miao ◽  
Ziqi Zhang ◽  
Stefan Jaeger ◽  
...  
Keyword(s):  
Deep Learning ◽  
Learning Algorithm ◽  
Model Development ◽  
Training Data ◽  
Test Accuracy ◽  
Pulmonary Infections ◽  
Deep Learning Algorithm ◽  
Average Accuracy ◽  
Independent Test ◽  
Comparable Performance

Background: Accurate and rapid diagnosis of coronavirus disease (COVID-19) is crucial for timely quarantine and treatment. Purpose: In this study, a deep learning algorithm-based AI model using ResUNet network was developed to evaluate the performance of radiologists with and without AI assistance in distinguishing COVID-19 infected pneumonia patients from other pulmonary infections on CT scans. Methods: For model development and validation, a total number of 694 cases with 111,066 CT slides were retrospectively collected as training data and independent test data in the study. Among them, 118 are confirmed COVID-19 infected pneumonia cases and 576 are other pulmonary infections cases (e.g. tuberculosis cases, common pneumonia cases and non-COVID-19 viral pneumonia cases). The cases were divided into training and testing datasets. The independent test was performed by evaluating and comparing the performance of three radiologists with different years of practice experience in distinguishing COVID-19 infected pneumonia cases with and without the AI assistance. Results: Our final model achieved an overall test accuracy of 0.914 with an area of the receiver operating characteristic (ROC) curve (AUC) of 0.903 in which the sensitivity and specificity are 0.918 and 0.909, respectively. The deep learning-based model then achieved a comparable performance by improving the radiologists’ performance in distinguish COVOD-19 from other pulmonary infections, yielding better average accuracy and sensitivity, from 0.941 to 0.951 and from 0.895 to 0.942, respectively, when compared to radiologists without using AI assistance. Conclusion: A deep learning algorithm-based AI model developed in this study successfully improved radiologists’ performance in distinguishing COVID-19 from other pulmonary infections using chest CT images.

scholarly journals Ensemble Deep Learning for Cervix Image Selection toward Improving Reliability in Automated Cervical Precancer Screening

Diagnostics ◽  
2020 ◽  
Vol 10 (7) ◽  
pp. 451 ◽  
Author(s):  
Peng Guo ◽  
Zhiyun Xue ◽  
Zac Mtema ◽  
Karen Yeates ◽  
Ophira Ginsburg ◽  
...  
Keyword(s):  
Deep Learning ◽  
Learning Algorithm ◽  
Binary Classification ◽  
Digital Camera ◽  
Deep Learning Algorithm ◽  
Average Accuracy ◽  
Acceptable Quality ◽  
Cervical Precancer ◽  
One Class Classification ◽  
Learning Architectures

Automated Visual Examination (AVE) is a deep learning algorithm that aims to improve the effectiveness of cervical precancer screening, particularly in low- and medium-resource regions. It was trained on data from a large longitudinal study conducted by the National Cancer Institute (NCI) and has been shown to accurately identify cervices with early stages of cervical neoplasia for clinical evaluation and treatment. The algorithm processes images of the uterine cervix taken with a digital camera and alerts the user if the woman is a candidate for further evaluation. This requires that the algorithm be presented with images of the cervix, which is the object of interest, of acceptable quality, i.e., in sharp focus, with good illumination, without shadows or other occlusions, and showing the entire squamo-columnar transformation zone. Our prior work has addressed some of these constraints to help discard images that do not meet these criteria. In this work, we present a novel algorithm that determines that the image contains the cervix to a sufficient extent. Non-cervix or other inadequate images could lead to suboptimal or wrong results. Manual removal of such images is labor intensive and time-consuming, particularly in working with large retrospective collections acquired with inadequate quality control. In this work, we present a novel ensemble deep learning method to identify cervix images and non-cervix images in a smartphone-acquired cervical image dataset. The ensemble method combined the assessment of three deep learning architectures, RetinaNet, Deep SVDD, and a customized CNN (Convolutional Neural Network), each using a different strategy to arrive at its decision, i.e., object detection, one-class classification, and binary classification. We examined the performance of each individual architecture and an ensemble of all three architectures. An average accuracy and F-1 score of 91.6% and 0.890, respectively, were achieved on a separate test dataset consisting of more than 30,000 smartphone-captured images.

scholarly journals Rib fracture detection system based on deep learning

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Liding Yao ◽  
Xiaojun Guan ◽  
Xiaowei Song ◽  
Yanbin Tan ◽  
Chun Wang ◽  
...  
Keyword(s):  
Deep Learning ◽  
Learning Algorithm ◽  
Detection System ◽  
Rib Fracture ◽  
Diagnostic Efficiency ◽  
Fracture Detection ◽  
Deep Learning Algorithm ◽  
Experienced Radiologist ◽  
Comparable Performance ◽  
Detection And Diagnosis

AbstractRib fracture detection is time-consuming and demanding work for radiologists. This study aimed to introduce a novel rib fracture detection system based on deep learning which can help radiologists to diagnose rib fractures in chest computer tomography (CT) images conveniently and accurately. A total of 1707 patients were included in this study from a single center. We developed a novel rib fracture detection system on chest CT using a three-step algorithm. According to the examination time, 1507, 100 and 100 patients were allocated to the training set, the validation set and the testing set, respectively. Free Response ROC analysis was performed to evaluate the sensitivity and false positivity of the deep learning algorithm. Precision, recall, F1-score, negative predictive value (NPV) and detection and diagnosis were selected as evaluation metrics to compare the diagnostic efficiency of this system with radiologists. The radiologist-only study was used as a benchmark and the radiologist-model collaboration study was evaluated to assess the model’s clinical applicability. A total of 50,170,399 blocks (fracture blocks, 91,574; normal blocks, 50,078,825) were labelled for training. The F1-score of the Rib Fracture Detection System was 0.890 and the precision, recall and NPV values were 0.869, 0.913 and 0.969, respectively. By interacting with this detection system, the F1-score of the junior and the experienced radiologists had improved from 0.796 to 0.925 and 0.889 to 0.970, respectively; the recall scores had increased from 0.693 to 0.920 and 0.853 to 0.972, respectively. On average, the diagnosis time of radiologist assisted with this detection system was reduced by 65.3 s. The constructed Rib Fracture Detection System has a comparable performance with the experienced radiologist and is readily available to automatically detect rib fracture in the clinical setting with high efficacy, which could reduce diagnosis time and radiologists’ workload in the clinical practice.

scholarly journals Evaluasi Performasi Ruang Warna pada Klasifikasi Diabetic Retinophaty Menggunakan Convolution Neural Network

2021 ◽  
Vol 8 (3) ◽  
pp. 619
Author(s):  
Candra Dewi ◽  
Andri Santoso ◽  
Indriati Indriati ◽  
Nadia Artha Dewi ◽  
Yoke Kusuma Arbawa
Keyword(s):  
Neural Network ◽  
Diabetic Retinopathy ◽  
Deep Learning ◽  
Convolutional Neural Network ◽  
Learning Algorithm ◽  
Color Space ◽  
Training Data ◽  
Color Spaces ◽  
Deep Learning Algorithm ◽  
Optimal Accuracy

<p>Semakin meningkatnya jumlah penderita diabetes menjadi salah satu faktor penyebab semakin tingginya penderita penyakit <em>diabetic retinophaty</em>. Salah satu citra yang digunakan oleh dokter mata untuk mengidentifikasi <em>diabetic retinophaty</em> adalah foto retina. Dalam penelitian ini dilakukan pengenalan penyakit diabetic retinophaty secara otomatis menggunakan citra <em>fundus</em> retina dan algoritme <em>Convolutional Neural Network</em> (CNN) yang merupakan variasi dari algoritme Deep Learning. Kendala yang ditemukan dalam proses pengenalan adalah warna retina yang cenderung merah kekuningan sehingga ruang warna RGB tidak menghasilkan akurasi yang optimal. Oleh karena itu, dalam penelitian ini dilakukan pengujian pada berbagai ruang warna untuk mendapatkan hasil yang lebih baik. Dari hasil uji coba menggunakan 1000 data pada ruang warna RGB, HSI, YUV dan L*a*b* memberikan hasil yang kurang optimal pada data seimbang dimana akurasi terbaik masih dibawah 50%. Namun pada data tidak seimbang menghasilkan akurasi yang cukup tinggi yaitu 83,53% pada ruang warna YUV dengan pengujian pada data latih dan akurasi 74,40% dengan data uji pada semua ruang warna.</p><p> </p><p><em><strong>Abstract</strong></em></p><p class="Abstract"><em>Increasing the number of people with diabetes is one of the factors causing the high number of people with diabetic retinopathy. One of the images used by ophthalmologists to identify diabetic retinopathy is a retinal photo. In this research, the identification of diabetic retinopathy is done automatically using retinal fundus images and the Convolutional Neural Network (CNN) algorithm, which is a variation of the Deep Learning algorithm. The obstacle found in the recognition process is the color of the retina which tends to be yellowish red so that the RGB color space does not produce optimal accuracy. Therefore, in this research, various color spaces were tested to get better results. From the results of trials using 1000 images data in the color space of RGB, HSI, YUV and L * a * b * give suboptimal results on balanced data where the best accuracy is still below 50%. However, the unbalanced data gives a fairly high accuracy of 83.53% with training data on the YUV color space and 74,40% with testing data on all color spaces.</em></p><p><em><strong><br /></strong></em></p>

scholarly journals Deep learning algorithm evaluation of hypertension classification in less photoplethysmography signals conditions

2021 ◽  
Vol 54 (3-4) ◽  
pp. 439-445
Author(s):  
Chih-Ta Yen ◽  
Sheng-Nan Chang ◽  
Cheng-Hong Liao
Keyword(s):  
Deep Learning ◽  
Short Term Memory ◽  
Learning Algorithm ◽  
Training Data ◽  
Short Term ◽  
Deep Learning Algorithm ◽  
Testing Dataset ◽  
Data Points ◽  
Optimal Classification ◽  
Long Short Term Memory

This study used photoplethysmography signals to classify hypertensive into no hypertension, prehypertension, stage I hypertension, and stage II hypertension. There are four deep learning models are compared in the study. The difficulties in the study are how to find the optimal parameters such as kernel, kernel size, and layers in less photoplethysmographyt (PPG) training data condition. PPG signals were used to train deep residual network convolutional neural network (ResNetCNN) and bidirectional long short-term memory (BILSTM) to determine the optimal operating parameters when each dataset consisted of 2100 data points. During the experiment, the proportion of training and testing datasets was 8:2. The model demonstrated an optimal classification accuracy of 76% when the testing dataset was used.

scholarly journals Classification of User Comment Using Word2vec and Deep Learning

2021 ◽  
Vol 11 (5) ◽  
pp. 1-8
Author(s):  
Rafly Indra Kurnia ◽  
◽  
Abba Suganda Girsang
Keyword(s):  
Social Media ◽  
Deep Learning ◽  
User Satisfaction ◽  
Rating Scale ◽  
Short Term Memory ◽  
Learning Algorithm ◽  
Training Data ◽  
Deep Learning Algorithm ◽  
User Comments

This study will classify the text based on the rating of the provider application on the Google Play Store. This research is classification of user comments using Word2vec and the deep learning algorithm in this case is Long Short Term Memory (LSTM) based on the rating given with a rating scale of 1-5 with a detailed rating 1 is the lowest and rating 5 is the highest data and a rating scale of 1-3 with a detailed rating, 1 as a negative is a combination of ratings 1 and 2, rating 2 as a neutral is rating 3, and rating 3 as a positive is a combination of ratings 4 and 5 to get sentiment from users using SMOTE oversampling to handle the imbalance data. The data used are 16369 data. The training data and the testing data will be taken from user comments MyTelkomsel’s application from the play.google.com site where each comment has a rating in Indonesian Language. This review data will be very useful for companies to make business decisions. This data can be obtained from social media, but social media does not provide a rating feature for every user comment. This research goal is that data from social media such as Twitter or Facebook can also quickly find out the total of the user satisfaction based from the rating from the comment given. The best f1 scores and precisions obtained using 5 classes with LSTM and SMOTE were 0.62 and 0.70 and the best f1 scores and precisions obtained using 3 classes with LSTM and SMOTE were 0.86 and 0.87

scholarly journals Representation Learning for Motor Imagery Recognition with Deep Neural Network

Electronics ◽  
2021 ◽  
Vol 10 (2) ◽  
pp. 112
Author(s):  
Fangzhou Xu ◽  
Fenqi Rong ◽  
Yunjing Miao ◽  
Yanan Sun ◽  
Gege Dong ◽  
...  
Keyword(s):  
Neural Network ◽  
Deep Learning ◽  
Motor Imagery ◽  
Learning Algorithm ◽  
Representation Learning ◽  
Training Data ◽  
Gradient Boosting ◽  
Future Research ◽  
Deep Learning Algorithm ◽  
The Brain

This study describes a method for classifying electrocorticograms (ECoGs) based on motor imagery (MI) on the brain–computer interface (BCI) system. This method is different from the traditional feature extraction and classification method. In this paper, the proposed method employs the deep learning algorithm for extracting features and the traditional algorithm for classification. Specifically, we mainly use the convolution neural network (CNN) to extract the features from the training data and then classify those features by combing with the gradient boosting (GB) algorithm. The comprehensive study with CNN and GB algorithms will profoundly help us to obtain more feature information from brain activities, enabling us to obtain the classification results from human body actions. The performance of the proposed framework has been evaluated on the dataset I of BCI Competition III. Furthermore, the combination of deep learning and traditional algorithms provides some ideas for future research with the BCI systems.

scholarly journals Validation of expert system enhanced deep learning algorithm for automated screening for COVID-Pneumonia on chest X-rays

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Prashant Sadashiv Gidde ◽  
Shyam Sunder Prasad ◽  
Ajay Pratap Singh ◽  
Nitin Bhatheja ◽  
Satyartha Prakash ◽  
...  
Keyword(s):  
Deep Learning ◽  
Learning Algorithm ◽  
Ground Truth ◽  
Training Data ◽  
X Rays ◽  
Rt Pcr ◽  
Deep Learning Algorithm ◽  
High Throughput Detection ◽  
Automated Screening ◽  
Pneumonia Diagnosis

AbstractSARS-CoV2 pandemic exposed the limitations of artificial intelligence based medical imaging systems. Earlier in the pandemic, the absence of sufficient training data prevented effective deep learning (DL) solutions for the diagnosis of COVID-19 based on X-Ray data. Here, addressing the lacunae in existing literature and algorithms with the paucity of initial training data; we describe CovBaseAI, an explainable tool using an ensemble of three DL models and an expert decision system (EDS) for COVID-Pneumonia diagnosis, trained entirely on pre-COVID-19 datasets. The performance and explainability of CovBaseAI was primarily validated on two independent datasets. Firstly, 1401 randomly selected CxR from an Indian quarantine center to assess effectiveness in excluding radiological COVID-Pneumonia requiring higher care. Second, curated dataset; 434 RT-PCR positive cases and 471 non-COVID/Normal historical scans, to assess performance in advanced medical settings. CovBaseAI had an accuracy of 87% with a negative predictive value of 98% in the quarantine-center data. However, sensitivity was 0.66–0.90 taking RT-PCR/radiologist opinion as ground truth. This work provides new insights on the usage of EDS with DL methods and the ability of algorithms to confidently predict COVID-Pneumonia while reinforcing the established learning; that benchmarking based on RT-PCR may not serve as reliable ground truth in radiological diagnosis. Such tools can pave the path for multi-modal high throughput detection of COVID-Pneumonia in screening and referral.

scholarly journals COVIDier: A Deep-learning Tool For Coronaviruses Genome And Virulence Proteins Classification

2020 ◽  
Author(s):  
Peter T. Habib ◽  
Alsamman M. Alsamman ◽  
Maha Saber-Ayad ◽  
Sameh E. Hassanein ◽  
Aladdin Hamwieh
Keyword(s):  
Deep Learning ◽  
Learning Algorithm ◽  
Training Data ◽  
Virus Family ◽  
Health Crisis ◽  
Virulence Proteins ◽  
Genome Data ◽  
Deep Learning Algorithm ◽  
Severity Of The Disease ◽  
Novel Coronavirus

AbstractCOVID-19, caused by SARS-CoV-2 infection, has already reached pandemic proportions in a matter of a few weeks. At the time of writing this manuscript, the unprecedented public health crisis caused more than 2.5 million cases with a mortality range of 5-7%. The SARS-CoV-2, also called novel Coronavirus, is related to both SARS-CoV and bat SARS. Great efforts have been spent to control the pandemic that has become a significant burden on the health systems in a short time. Since the emergence of the crisis, a great number of researchers started to use the AI tools to identify drugs, diagnosing using CT scan images, scanning body temperature, and classifying the severity of the disease. The emergence of variants of the SARS-CoV-2 genome is a challenging problem with expected serious consequences on the management of the disease. Here, we introduce COVIDier, a deep learning-based software that is enabled to classify the different genomes of Alpha coronavirus, Beta coronavirus, MERS, SARS-CoV-1, SARS-CoV-2, and bronchitis-CoV. COVIDier was trained on 1925 genomes, belonging to the three families of SARS retrieved from NCBI Database to propose a new method to train deep learning model trained on genome data using Multi-layer Perceptron Classifier (MLPClassifier), a deep learning algorithm, that could blindly predict the virus family name from the genome of by predicting the statistically similar genome from training data to the given genome. COVIDier able to predict how close the emerging novel genomes of SARS to the known genomes with accuracy 99%. COVIDier can replace tools like BLAST that consume higher CPU and time.

scholarly journals Pill Detection Model for Medicine Inspection Based on Deep Learning

Chemosensors ◽  
2021 ◽  
Vol 10 (1) ◽  
pp. 4
Author(s):  
Hyuk-Ju Kwon ◽  
Hwi-Gang Kim ◽  
Sung-Hak Lee
Keyword(s):  
Deep Learning ◽  
Human Error ◽  
Learning Algorithm ◽  
Expansion Method ◽  
Training Data ◽  
Data Set ◽  
Learning Stage ◽  
Detection Model ◽  
Deep Learning Algorithm ◽  
Single Pill

This paper proposes a deep learning algorithm that can improve pill identification performance using limited training data. In general, when individual pills are detected in multiple pill images, the algorithm uses multiple pill images from the learning stage. However, when there is an increase in the number of pill types to be identified, the pill combinations in an image increase exponentially. To detect individual pills in an image that contains multiple pills, we first propose an effective database expansion method for a single pill. Then, the expanded training data are used to improve the detection performance. Our proposed method shows higher performance improvement than the existing algorithms despite the limited imaging and data set size. Our proposed method will help minimize problems, such as loss of productivity and human error, which occur while inspecting dispensed pills.

scholarly journals Diffeomorphic unsupervised deep learning model for mono- and multi-modality registration

2020 ◽  
Vol 14 ◽  
pp. 174830262097352
Author(s):  
Anis Theljani ◽  
Ke Chen
Keyword(s):  
Deep Learning ◽  
Learning Algorithm ◽  
Training Data ◽  
Variational Model ◽  
Learning Network ◽  
Deep Learning Algorithm ◽  
Unsupervised Deep Learning ◽  
Deep Learning Network ◽  
Affine Transforms ◽  
Deep Learning Model

Different from image segmentation, developing a deep learning network for image registration is less straightforward because training data cannot be prepared or supervised by humans unless they are trivial (e.g. pre-designed affine transforms). One approach for an unsupervised deep leaning model is to self-train the deformation fields by a network based on a loss function with an image similarity metric and a regularisation term, just with traditional variational methods. Such a function consists in a smoothing constraint on the derivatives and a constraint on the determinant of the transformation in order to obtain a spatially smooth and plausible solution. Although any variational model may be used to work with a deep learning algorithm, the challenge lies in achieving robustness. The proposed algorithm is first trained based on a new and robust variational model and tested on synthetic and real mono-modal images. The results show how it deals with large deformation registration problems and leads to a real time solution with no folding. It is then generalised to multi-modal images. Experiments and comparisons with learning and non-learning models demonstrate that this approach can deliver good performances and simultaneously generate an accurate diffeomorphic transformation.

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