DNA methylation balance is involved in anthocyanin accumulation during Vaccinium corymbosum fruit ripening

2020 ◽  
Vol 10 (4) ◽  
pp. 651-663
Author(s):  
Lei Yu ◽  
Ya Zhou ◽  
Yihui Zhang ◽  
Wei Liu ◽  
Yongqiang Li ◽  
...  
Keyword(s):  
Dna Methylation ◽  
Fruit Ripening ◽  
Fruit Development ◽  
Expression Patterns ◽  
Vaccinium Corymbosum ◽  
Anthocyanin Accumulation ◽  
Flower Bud ◽  
Biosynthetic Genes ◽  
Relative Expression ◽  
Anthocyanin Biosynthetic Genes

BACKGROUND: DNA methylation balance is an important regulatory mechanism for mammalian and plant development. The fruit ripening and anthocyanin accumulation of Vaccinium corymbosum are complex developmental processes that involve numerous physiological, biochemical, and structural alterations. OBJECTIVE: This study aimed to investigate the correlation of DNA methylation balance, DNA methylation and demethylation-related gene expression models and anthocyanin accumulation during blueberry fruit ripening. METHODS: The anthocyanin contents during V. corymbosum ‘O’Neal’ fruit development were evaluated. The V. corymbosum DNA methylation- and anthocyanin accumulation-related genes were isolated, and their relative expression patterns were detected during flower bud enlargement and fruit development. Moreover, the relative expression patterns of anthocyanin biosynthetic genes and the dynamic changes in the DNA methylation of the promoter sequences of key anthocyanin biosynthetic genes were evaluated. RESULTS: The results showed that the DNA methylation level of V. corymbosum fruit was consistent with anthocyanin accumulation during ripening, and the expression levels of anthocyanin biosynthetic and DNA methylation-related genes. CONCLUSIONS: During V. corymbosum fruit ripening, anthocyanin accumulation is regulated partially by DNA methylation balance of VcCHS and VcANS promoters.

Expression of Anthocyanin Biosynthetic Genes during Fruit Development in ‘Fengxiang’ Strawberry

2012 ◽  
Vol 455-456 ◽  
pp. 443-448
Author(s):  
Bo Zhou ◽  
Shu Hua Yan ◽  
Yu Hua Li
Keyword(s):  
Fruit Development ◽  
Anthocyanin Biosynthesis ◽  
Northern Analysis ◽  
Anthocyanin Synthesis ◽  
Mrna Levels ◽  
Anthocyanin Accumulation ◽  
Flavonoid Pathway ◽  
Biosynthetic Genes ◽  
Pigment Accumulation ◽  
Anthocyanin Biosynthetic Genes

Anthocyanins are the main pigments in flowers and fruits. In most cases, anthocyanin accumulation in fruit is highly controlled by the developmental level. In this study, the cDNA fragments of three genes, chalcone synthase (CHS), dihydroflavonol 4-reductase (DFR), and anthocyanidin synthase (ANS), which are involved in the flavonoid pathway, were isolated from total RNA of strawberry ripe fruit by using polymerase chain reaction technique and labeled as probes to determine the expression of anthocyanin biosynthetic genes. Northern analysis showed that a correlation between anthocyanin accumulation and expression of the flavonoid pathway genes during the ripening of strawberry fruits. At the early stages of fruit development, the mRNA levels encoding CHS, DFR, ANS were high probably responsible for the accumulation of condensed tannins, but the levels decreased dramatically when fruits turned white from green. During the stage of pigment accumulation, their mRNA levels increased strongly to be involved anthocyanin biosynthesis. Difference of CHS in mRNA abundance was correlated with differential accumulation of anthocyanins throughout the process of fruit development. Therefore, CHS could be a key structure gene involved in anthocyanin synthesis. Furthermore, the co-ordination of expression of anthocyanin biosynthetic genes implied a common regulatory mechanism controlling the expression of structural genes in the flavonoid pathway.

scholarly journals Anthocyanin Accumulation and Related Gene Expression Profile in ‘Red Zaosu’ Pear and Its Green Mutant

Agriculture ◽  
2021 ◽  
Vol 11 (9) ◽  
pp. 898
Author(s):  
Yunting Zhang ◽  
Shanlin Li ◽  
Xianjie Gu ◽  
Diya Lei ◽  
Bing Zhao ◽  
...  
Keyword(s):  
Gene Expression ◽  
Anthocyanin Biosynthesis ◽  
Expression Profiles ◽  
Expression Patterns ◽  
Anthocyanin Content ◽  
Anthocyanin Accumulation ◽  
Biosynthetic Genes ◽  
Specific Expression ◽  
Anthocyanin Biosynthetic Genes ◽  
Green Mutant

Red-skinned pear is a promising commercial fruit due to its attractive appearance and nutritious value. Anthocyanin is the determinant of the red coloration of the pear peel. However, differences in anthocyanin accumulation exist among red pear cultivars with different genetic backgrounds. In this study, we analyzed the anthocyanin content and gene expression patterns in the fruits and different tissues of the red pear ‘Red Zaosu’ at different developmental stages and found a difference in anthocyanin accumulation between ‘Red Zaosu’ pear and its green mutant. The data showed that the expression profiles of transcripts that encoded critical anthocyanin biosynthetic genes were basically consistent with a tendency to a decreased anthocyanin content during fruit development, indicating that a synergistic effect of these genes was responsible for anthocyanin biosynthesis and regulation. Tissue-specific expression analysis of anthocyanin biosynthetic genes showed that they could be expressed in all tissues but at different levels. PbF3H, PbDFR, and PbANS were mainly expressed during the early flowering period, which explained the reduced levels of anthocyanin content in petals. Additionally, the content of anthocyanins and the expression levels of PbDFR, PbANS, and PbMYB10 significantly decreased in the green mutant of ‘Red Zaosu’, suggesting that PbDFR, PbANS, and PbMYB10 probably play a decisive role in determining the skin coloration of ‘Red Zaosu’ and its green mutant.

Genome-wide identification and analysis of the MADS-box gene family and its potential role in fruit ripening in black raspberry (Rubus occidentalis L.)

2021 ◽  
pp. 1-15
Author(s):  
Yaqiong Wu ◽  
Chunhong Zhang ◽  
Wenlong Wu ◽  
Weilin Li ◽  
Lianfei Lyu
Keyword(s):  
Gene Family ◽  
Fruit Ripening ◽  
Fruit Development ◽  
Expression Patterns ◽  
Type I ◽  
Black Raspberry ◽  
Mads Box ◽  
Mads Box Genes ◽  
Genome Wide ◽  
Mads Box Gene

BACKGROUND: Black raspberry is a vital fruit crop with a high antioxidant function. MADS-box genes play an important role in the regulation of fruit development in angiosperms. OBJECTIVE: To understand the regulatory role of the MADS-box family, a total of 80 MADS-box genes were identified and analyzed. METHODS: The MADS-box genes in the black raspberry genome were analyzed using bioinformatics methods. Through an analysis of the promoter elements, the possible functions of different members of the family were predicted. The spatiotemporal expression patterns of members of the MADS-box family during black raspberry fruit development and ripening were systematically analyzed. RESULTS: The genes were classified into type I (Mα: 33; Mβ: 6; Mγ: 10) and type II (MIKC *: 2; MIKCC: 29) genes. We also obtained a complete overview of the RoMADS-box gene family through phylogenetic, gene structure, conserved motif, and cis element analyses. The relative expression analysis showed different expression patterns, and most RoMADS-box genes were more highly expressed in fruit than in other tissues of black raspberry. CONCLUSIONS: This finding indicates that the MADS-box gene family is involved in the regulation of fruit ripening processes in black raspberry.

scholarly journals Genome-wide identification and characterization of COMT gene family during the development of blueberry fruit

2021 ◽  
Vol 21 (1) ◽  
Author(s):  
Yushan Liu ◽  
Yizhou Wang ◽  
Jiabo Pei ◽  
Yadong Li ◽  
Haiyue Sun
Keyword(s):  
Gene Family ◽  
Fruit Development ◽  
Lignin Content ◽  
Phylogenetic Analyses ◽  
Expression Patterns ◽  
Vaccinium Corymbosum ◽  
Land Plant ◽  
Phylogenetic Structure ◽  
Genome Wide

Abstract Background Caffeic acid O-methyltransferases (COMTs) play an important role in the diversification of natural products, especially in the phenylalanine metabolic pathway of plant. The content of COMT genes in blueberry and relationship between their expression patterns and the lignin content during fruit development have not clearly investigated by now. Results Ninety-two VcCOMTs were identified in Vaccinium corymbosum. According to phylogenetic analyses, the 92 VcCOMTs were divided into 2 groups. The gene structure and conserved motifs within groups were similar which supported the reliability of the phylogenetic structure groupings. Dispersed duplication (DSD) and whole-genome duplication (WGD) were determined to be the major forces in VcCOMTs evolution. The results showed that the results of qRT-PCR and lignin content for 22 VcCOMTs, VcCOMT40 and VcCOMT92 were related to lignin content at different stages of fruit development of blueberry. Conclusion We identified COMT gene family in blueberry, and performed comparative analyses of the phylogenetic relationships in the 15 species of land plant, and gene duplication patterns of COMT genes in 5 of the 15 species. We found 2 VcCOMTs were highly expressed and their relative contents were similar to the variation trend of lignin content during the development of blueberry fruit. These results provide a clue for further study on the roles of VcCOMTs in the development of blueberry fruit and could promisingly be foundations for breeding blueberry clutivals with higher fruit firmness and longer shelf life.

scholarly journals Enhanced Bud Production in Highbush Blueberry (Vaccinium corymbosum L.) in Response to Paclobutrazol

HortScience ◽  
1998 ◽  
Vol 33 (1) ◽  
pp. 75-77 ◽  
Author(s):  
Mark K. Ehlenfeldt
Keyword(s):  
Fruit Ripening ◽  
Fruit Size ◽  
Shoot Elongation ◽  
Plant Size ◽  
Vaccinium Corymbosum ◽  
Highbush Blueberry ◽  
Flower Bud ◽  
Bud Formation ◽  
Bud Set ◽  
Determining Factor

Blueberry cultivars were treated with either soil drenches or foliar applications of paclobutrazol. Soil drenches of 25 mg·L-1 inhibited shoot elongation and stimulated earlier and greater flower bud production on `Bluetta', `Bluecrop', and `Jersey'. The treatments increased bud numbers 359% to 797%, and stimulated compound bud formation, while reducing formation of vegetative buds. This resulted in overcropping and reduced fruit size. Foliar applications at concentrations of 5, 10, 50, and 100 mg·L-1 increased bud set. Treatments did not significantly alter time to 50% flowering in `Bluecrop' or `Duke', but hastened flowering up to 5 days in `Blueray' at 200 ppm. Fruit ripening was significantly delayed at 100 and 200 ppm in `Bluecrop' due to overcropping, but no delays were observed in `Blueray' or `Duke'. Plant size and vigor appeared to be a determining factor in plant response. Chemical name used: PP333 or (2RS,3RS)-l(4-chlorophenyl)-4,4-dimethyl-2-(l,2,4-triazol-1-yl)pentan-3-ol (paclobutrazol).

scholarly journals Analysis of Evolution, Expression and Genetic Transformation of TCP Transcription Factors in Blueberry Reveal That VcTCP18 Negatively Regulates the Release of Flower Bud Dormancy

2021 ◽  
Vol 12 ◽  
Author(s):  
Yongqiang Li ◽  
Shuang An ◽  
Qiangqiang Cheng ◽  
Yu Zong ◽  
Wenrong Chen ◽  
...  
Keyword(s):  
Transcription Factors ◽  
Plant Growth ◽  
Gene Family ◽  
Fruit Development ◽  
Germination Rate ◽  
Expression Patterns ◽  
Bud Dormancy ◽  
Dormancy Release ◽  
Flower Bud ◽  
Bud Dormancy Release

Plant-specific TEOSINTE BRANCHED 1, CYCLOIDEA, PROLIFERATING CELL FACTORS (TCP) transcription factors have versatile functions in plant growth, development and response to environmental stress. Despite blueberry’s value as an important fruit crop, the TCP gene family has not been systematically studied in this plant. The current study identified blueberry TCP genes (VcTCPs) using genomic data from the tetraploid blueberry variety ‘Draper’; a total of 62 genes were obtained. Using multiple sequence alignment, conserved motif, and gene structure analyses, family members were divided into two subfamilies, of which class II was further divided into two subclasses, CIN and TB1. Synteny analysis showed that genome-wide or segment-based replication played an important role in the expansion of the blueberry TCP gene family. The expression patterns of VcTCP genes during fruit development, flower bud dormancy release, hormone treatment, and tissue-specific expression were analyzed using RNA-seq and qRT-PCR. The results showed that the TB1 subclass members exhibited a certain level of expression in the shoot, leaf, and bud; these genes were not expressed during fruit development, but transcript levels decreased uniformly during the release of flower bud dormancy by low-temperature accumulation. The further transgenic experiments showed the overexpression of VcTCP18 in Arabidopsis significantly decreased the seed germination rate in contrast to the wild type. The bud dormancy phenomena as late-flowering, fewer rosettes and main branches were also observed in transgenic plants. Overall, this study provides the first insight into the evolution, expression, and function of VcTCP genes, including the discovery that VcTCP18 negatively regulated bud dormancy release in blueberry. The results will deepen our understanding of the function of TCPs in plant growth and development.

scholarly journals Flower Bud Density Affects Vegetative and Fruit Development in Field-grown Southern Highbush Blueberry

HortScience ◽  
1999 ◽  
Vol 34 (4) ◽  
pp. 607-610 ◽  
Author(s):  
B.E. Maust ◽  
J.G. Williamson ◽  
R.L. Darnell
Keyword(s):  
Leaf Area ◽  
Fruit Development ◽  
Fruit Size ◽  
Dry Weight ◽  
Vaccinium Corymbosum ◽  
Soluble Solids ◽  
Highbush Blueberry ◽  
Flower Buds ◽  
Flower Bud ◽  
Southern Highbush

Floral budbreak and fruit set in many southern highbush blueberry (SHB) cultivars (hybrids of Vaccinium corymbosum L. with other species of Vaccinium) begin prior to vegetative budbreak. Experiments were conducted with two SHB cultivars, `Misty' and `Sharpblue', to test the hypothesis that initial flower bud density (flower buds/m cane length) affects vegetative budbreak and shoot development, which in turn affect fruit development. Flower bud density of field-grown plants was adjusted in two nonconsecutive years by removing none, one-third, or two-thirds of the flower buds during dormancy. Vegetative budbreak, new shoot dry weight, leaf area, and leaf area: fruit ratios decreased with increasing flower bud density in both cultivars. Average fruit fresh weight and fruit soluble solids decreased in both cultivars, and fruit ripening was delayed in `Misty' as leaf area: fruit ratios decreased. This study indicates that because of the inverse relationship between flower bud density and canopy establishment, decreasing the density of flower buds in SHB will increase fruit size and quality and hasten ripening.

scholarly journals Comparative Metabolite and Gene Expression Analyses in Combination With Gene Characterization Revealed the Patterns of Flavonoid Accumulation During Cistus creticus subsp. creticus Fruit Development

2021 ◽  
Vol 12 ◽  
Author(s):  
Neda Aničić ◽  
Efstathia Patelou ◽  
Antigoni Papanikolaou ◽  
Anthi Kanioura ◽  
Camilla Valdesturli ◽  
...  
Keyword(s):  
Transcription Factors ◽  
Fruit Development ◽  
Expression Patterns ◽  
Building Blocks ◽  
Bioactive Metabolites ◽  
Fruit Maturation ◽  
Biosynthetic Genes ◽  
Positive Correlations ◽  
High Degree ◽  
Cistus Creticus

Cistus creticus L. subsp. creticus (rockrose) is a shrub widespread in Greece and the Mediterranean basin and has been used in traditional medicine as herb tea for colds, for healing and digestive hitches, for the treatment of maladies, as perfumes, and for other purposes. Compounds from its flavonoid fraction have recently drawn attention due to antiviral action against influenza virus and HIV. Although several bioactive metabolites belonging to this group have been chemically characterized in the leaves, the genes involved in their biosynthesis in Cistus remain largely unknown. Flavonoid metabolism during C. creticus fruit development was studied by adopting comparative metabolomic and transcriptomic approaches. The present study highlights the fruit of C. creticus subsp. creticus as a rich source of flavonols, flavan-3-ols, and proanthocyanidins, all of which displayed a decreasing trend during fruit development. The majority of proanthocyanidins recorded in Cistus fruit are B-type procyanidins and prodelphinidins, while gallocatechin and catechin are the dominant flavan-3-ols. The expression patterns of biosynthetic genes and transcription factors were analyzed in flowers and throughout three fruit development stages. Flavonoid biosynthetic genes were developmentally regulated, showing a decrease in transcript levels during fruit maturation. A high degree of positive correlations between the content of targeted metabolites and the expression of biosynthetic genes indicated the transcriptional regulation of flavonoid biosynthesis during C. creticus fruit development. This is further supported by the high degree of significant positive correlations between the expression of biosynthetic genes and transcription factors. The results suggest that leucoanthocyanidin reductase predominates the biosynthetic pathway in the control of flavan-3-ol formation, which results in catechin and gallocatechin as two of the major building blocks for Cistus proanthocyanidins. Additionally, there is a decline in ethylene production rates during non-climacteric Cistus fruit maturation, which coincides with the downregulation of the majority of flavonoid- and ethylene-related biosynthetic genes and corresponding transcription factors as well as with the decline in flavonoid content. Finally, functional characterization of a Cistus flavonoid hydroxylase (F3′5′H) was performed for the first time.

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