scholarly journals A phenetic analysis of Philippine Rubus species (Rosaceae) by morphology

2020 ◽  
Vol 13 (1) ◽  

The taxonomy of the Philippine Rubus species was studied through a phenetic analysis of the morphological data from preserved specimens. After recording the character states, the data were analyzed using cluster analysis and PCA, and the resulting analysis allowed the delimitation of morphologically similar Rubus species. Specimens of the Rubus genus collected in the country were separated into two clusters distinguished by leaf structure. Specimens of the same species are often found in multiple sub-clusters, which suggests the high degree of variation within a species. PCA of morphological data from Rubus species show that leaf and floral characters, which include the maximum number of lobes, pedicel pubescence, outside pubescence of the hypanthium, apex of the simple leaf blade, and the apical process of the sepals, explain the variation in Rubus species in the Philippines.

1971 ◽  
Vol 8 (3) ◽  
pp. 340-347 ◽  
Author(s):  
George S. Day ◽  
Roger M. Heeler

When the selection of a sample of stores or cities requires a high degree of similarity among the test units in order to ensure a sensitive experiment, the sample may no longer represent the market. These conflicting requirements can be satisfied by choosing the sample from clusters displayed in a reduced space representation of the market.


Zootaxa ◽  
2018 ◽  
Vol 4512 (1) ◽  
pp. 1
Author(s):  
CHRISTINE M. KAISER ◽  
HINRICH KAISER ◽  
MARK O’SHEA

Since its conceptualization in 1854, 29 species of the colubrid genus Stegonotus have been recognized or described, of which 15 (admiraltiensis, batjanensis, borneensis, cucullatus, derooijae, diehli, florensis, guentheri, iridis, heterurus, melanolabiatus, modestus, muelleri, parvus, poechi) are still considered valid today. Original species descriptions for the members of this genus were published in Dutch, English, French, German, and Italian and, perhaps as a consequence of these polyglot origins, there has been a considerable amount of confusion over which species names should be applied to which populations of Stegonotus throughout its range across Borneo, the Philippines, Wallacea, New Guinea, Australia, and associated archipelagos. In addition, the terminology used to notate characteristics in the descriptions of these forms was not uniform and may have added to the taxonomic confusion. In this paper, we trace in detail the history of the type specimens, the species, and the synonyms currently associated with the genus Stegonotus and provide a basic, species-specific listing of their characteristics, derived from our examination of over 1500 museum specimens. Based on our data, we are able to limit the distribution of S. modestus to the islands of Ambon, Buru, and Seram in the central Moluccas of Indonesian Wallacea. We correct the type locality of S. cucullatus to the Manokwari area on the Bird’s Head Peninsula of West Papua, Indonesian New Guinea and designate a neotype for S. parvus, a species likely to be a regional endemic in the Schouten Archipelago of Cenderawasih Bay (formerly Geelvink Bay), Indonesian New Guinea. We unequivocally identify and explain the problematic localities of the type specimens of S. muelleri and Lycodon muelleri, which currently reside in the same specimen jar. We remove L. aruensis and L. lividum from the synonymy of S. modestus and recognize them as S. aruensis n. comb. and S. lividus n. comb., respectively. We remove S. keyensis and Zamenophis australis from the synonymy of S. cucullatus and recognize them as S. keyensis n. comb. and S. australis n. comb., respectively. We further remove S. reticulatus from the synonymy of S. cucullatus, S. dorsalis from the synonymy of S. diehli, and S. sutteri from the synonymy of S. florensis. We designate lectotypes for S. guentheri, S. heterurus, S. lividus, and S. reticulatus. Lastly, we introduce S. poechi, a valid species not mentioned in the scientific literature since its description in 1924. This brings the diversity in the genus Stegonotus to 22 species. We also caution that in a complex group of organisms like Stegonotus any rush to taxonomic judgment on the basis of molecular and incomplete morphological data sets may perpetuate errors and introduce incongruities. Only through the careful work of connecting type material with museum specimens and molecular data can the taxonomy and nomenclature of complex taxa be stabilized. 


2018 ◽  
Vol 19 (12) ◽  
pp. 3780 ◽  
Author(s):  
Dingxuan He ◽  
Andrew Gichira ◽  
Zhizhong Li ◽  
John Nzei ◽  
Youhao Guo ◽  
...  

The order Nymphaeales, consisting of three families with a record of eight genera, has gained significant interest from botanists, probably due to its position as a basal angiosperm. The phylogenetic relationships within the order have been well studied; however, a few controversial nodes still remain in the Nymphaeaceae. The position of the Nuphar genus and the monophyly of the Nymphaeaceae family remain uncertain. This study adds to the increasing number of the completely sequenced plastid genomes of the Nymphaeales and applies a large chloroplast gene data set in reconstructing the intergeneric relationships within the Nymphaeaceae. Five complete chloroplast genomes were newly generated, including a first for the monotypic Euryale genus. Using a set of 66 protein-coding genes from the chloroplast genomes of 17 taxa, the phylogenetic position of Nuphar was determined and a monophyletic Nymphaeaceae family was obtained with convincing statistical support from both partitioned and unpartitioned data schemes. Although genomic comparative analyses revealed a high degree of synteny among the chloroplast genomes of the ancient angiosperms, key minor variations were evident, particularly in the contraction/expansion of the inverted-repeat regions and in RNA-editing events. Genome structure, and gene content and arrangement were highly conserved among the chloroplast genomes. The intergeneric relationships defined in this study are congruent with those inferred using morphological data.


1998 ◽  
Vol 15 (4) ◽  
pp. 755-764 ◽  
Author(s):  
M.L. FIRSOV ◽  
D.G. GREEN

Photoreceptors in the isolated turtle retina of two species of turtle, Chelydra serpentina and Pseudemus scripta elegans, were penetrated with double-barrel electrodes. Physiological responses were recorded through one barrel and Neurobiotin tracer was injected from the other. Intracellular injection of Neurobiotin revealed patterns of tracer-coupled photoreceptors. Both the patterns of tracer coupling and the electrophysiology suggest a high degree of specificity of connections. Rods seem to be coupled only to rods and green and red cones seem to be coupled to cones of the same spectral type. Receptive-field profiles, measured with a thin, sharply focused slit of light, often had well-defined peaks and troughs in sensitivity. We have taken advantage of this observation and used the position of a peak in sensitivity to locate the position on the retina of a coupled cell. In one rod, it was possible to correlate physiological and morphological data and to show that the peaks in the physiological receptive field occurred at positions on the retina where there were dye-coupled cells. This provides direct evidence that gap junctions produce the physiological coupling between rods.


1970 ◽  
pp. 6-7
Author(s):  
Rose Ghurayyib

Within the period which followed the proclamation of the Philippines' independence, 1946, the country became one of the few states where a woman occupied the highest position in the Government. Corazon Aquino was elected president of the republic in 1984. If we also mention that the Philippine women include hundreds of physicians, business managers, university professors, and that they form two thirds of the law students in the country, we might conclude, from the above facts, that the Philippine woman has' achieved a high degree of freedom and modernism.


2012 ◽  
Vol 20 (1) ◽  
pp. 5-19 ◽  
Author(s):  
Mehdi Aran ◽  
Reza Fatahi ◽  
Zabihollah Zamani

ABSTRACT Plum seedlings are extensively used as rootstocks for stone fruits except P. cerasus. Genetic diversity in seedlings used for rootstocks might result in variation of scion performance and subsequently non-uniform orchards. This study aimed on investigating variation among several Iranian plum genotypes sampled from seedlings grown for grafting. Thirty-five 3- to 4-year-old seedlings were characterized using 28 quantitative and qualitative traits, as well as 22 RAPD markers. Results of the morphological study revealed remarkable variability in studied traits. Genotypes were separated into three different groups according to their height using cluster analysis performed by Ward’s clustering method based on morphological data. Twenty two RAPD primers from 120 screened produced 195 polymorphic reproducible bands (86.75% polymorphism). According to the similarity matrix, the lowest similarity was obtained between the genotype Tansgol (control) and S4-13 and the highest similarity between S11-25 and S11-26. According to the cluster analysis based on Jaccard's similarity coefficients and the UPGMA method at a similarity level of 0.56, the genotypes were divided into six sub-clusters. Significant association between eight morphological traits with RAPD markers was found by marker association analysis done using multiple linear regressions. The application of the methodology in screening elite genotypes is discussed.


Phytotaxa ◽  
2013 ◽  
Vol 145 (1) ◽  
pp. 1 ◽  
Author(s):  
Federico O. Robbiati ◽  
Alícia Lamarque ◽  
Ana M. Anton ◽  
Renée H. Fortunato

Multivariate and univariate analyses based on morphological characters and seed soluble protein electrophoretic profiles were carried out in order to understand the taxonomic status within the complex S. fabrisii-S. trichosepala. Twenty morphological characters from herbarium specimens were recorded and analyzed by ANOVA, principal component and cluster analysis. The seed protein electrophoretic analysis including cluster analysis was based on three populations: one of S. fabrisii and two of S. trichosepala. The results showed that both taxa differed only by three morphological features; in parallel, the CPA and CA demonstrate that no clearly separated group can be recognized. The seed protein electrophoretic profiles show a high degree of similarity. Based on these results, and due to the variability observed, the inclusion of S. fabrisii in the synonymy of S. trichosepala is proposed.


2018 ◽  
Vol 10 (2) ◽  
pp. 245-251
Author(s):  
Weni Lestari ◽  
Jumari Jumari ◽  
Rejeki Siti Ferniah

Nepenthes spp. is a typical plant of Southeast Asia especially Indonesia which has a special leaf modification called a pitcher. The largest number of Nepenthes spp. species in Indonesia is on the island of Sumatra. The purpose of this reseach was to identify and analyze cluster Nepenthes spp. from South Sumatra based on morphological characteristics. The specimens were collected from the forest of Tekorejo Village, Air Itam Village and cultivation location in Palembang city of South Sumatra. Identification of morphological characters performed on the characteristics of root, stem, leaves, and pitcher. The morphological data is used for cluster analysis using NTSYS software version 2.02. The identification results showed 9 variants of Nepenthes spp. which belong to the species N. mirabilis, N. gracilis, and N. sumatrana. Dendogram analysis results form two main clusters with a similarity value of 22%. The first cluster consists of N. mirabilis and N. sumatrana. The second cluster consists of N. gracilis. Based on the results of this study can be concluded that the species Nepenthes spp. South Sumatra is N. mirabilis, N. gracilis, and N. sumatrana. The results of this study will be dedicated to updating information about the existence of Nepenthes spp. from South Sumatra and his cluster.


Author(s):  
Nafisah M. Abdulrachman ◽  
Aisha M. Ali ◽  
Hanifa M. Maurac ◽  
Annabella G. Villarino

Plants are utilized as traditional medicines since time immemorial. However, the dilemma of losing this knowledge is real because of poor documentation evidenced by the relatively few studies conducted coupled with rapid urbanization especially in the Philippines. It is imperative for ethnomedicinal knowledge especially of the M’ranao tribe in Baloi, Lanao del Norte to be conserved , hence this study. Ethnomedicinal data were collected from semi-structured interviews of 30 informants and analyzed qualitatively and quantitatively. Moreover, transect walk was performed to locate the frequently used medicinal plants. This study documented seventy eight (78) species of medicinal plants belonging to 36 families used for the treatment of various ailments belonging to 14 out of 16 human disease categories. The most important medicinal plant with a Use Value (UV) of 0.43 is Mingeyak (Salvia plebeian). There were fifty five (55) floral species found to have 100% Fidelity Level (FL) value. An Informant Concensus Factor (ICF) of 1.00 for disease Category 2, Category 3, and Category 16 indicates that there was a high degree of agreement among informants on how to treat cancer, anemia, and intestinal toxicity respectively. Leaves (63%) were the most frequently used plant part and decoction (41%) was the most common way of preparation. Internal application (77%) was the most recurrent way of plant administration to the ailing body. Herbs (47%) as medicine were the most frequently used plant habit. Qualitative investigation resulted to the identification of M’ranao traditional beliefs and practices in utilizing medicinal plants which include the time of collection, the number of plant organ collected (e.g. pito-pito) and the ways of conserving herbal plants for continuing sustainability. This study further revealed that the M’ranao tribe of Baloi has a rich floral resources use as medicines which could be further investigated for pharmacological properties to improve health care for various illnesses.


eLife ◽  
2020 ◽  
Vol 9 ◽  
Author(s):  
Benedict King ◽  
Martin Rücklin

Phylogenetic analysis of morphological data proceeds from a fixed set of primary homology statements, the character-by-taxon matrix. However, there are cases where multiple conflicting homology statements can be justified from comparative anatomy. The upper jaw bones of placoderms have traditionally been considered homologous to the palatal vomer-dermopalatine series of osteichthyans. The discovery of ‘maxillate’ placoderms led to the alternative hypothesis that ‘core’ placoderm jaw bones are premaxillae and maxillae lacking external (facial) laminae. We introduce a BEAST2 package for simultaneous inference of homology and phylogeny, and find strong evidence for the latter hypothesis. Phenetic analysis of reconstructed ancestors suggests that maxillate placoderms are the most plesiomorphic known gnathostomes, and the shared cranial architecture of arthrodire placoderms, maxillate placoderms and osteichthyans is inherited. We suggest that the gnathostome ancestor possessed maxillae and premaxillae with facial and palatal laminae, and that these bones underwent divergent evolutionary trajectories in placoderms and osteichthyans.


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