Genetic characterization of cystic pulmonary echinococcosis in Sudan as determined by mitochondrial DNA sequences

2021 ◽  
Vol 04 (03) ◽  
Author(s):  
Sara S Abdalla ◽  
Mohamed E Ahmed ◽  
Alsmawal Awad Elimam ◽  
Mawahib H Eldigail ◽  
Imadeldin E Aradaib ◽  
...  
2011 ◽  
Vol 115 (4-5) ◽  
pp. 432-442 ◽  
Author(s):  
Marco Antonio Mammella ◽  
Santa Olga Cacciola ◽  
Frank Martin ◽  
Leonardo Schena

2018 ◽  
Vol 89 (12) ◽  
pp. 1641-1647
Author(s):  
Thu N. A. Le ◽  
Hai V. Vu ◽  
Yu Okuda ◽  
Huong T. Duong ◽  
Trung B. Nguyen ◽  
...  

2018 ◽  
Vol 18 (3) ◽  
pp. 341-348 ◽  
Author(s):  
Ilmira Mukhametzharova ◽  
Yessenbay Islamov ◽  
Saukymbek Shauyenov ◽  
Dulat Ibrayev ◽  
Sabina Atavliyeva ◽  
...  

2003 ◽  
Vol 78 (2) ◽  
pp. 241-247 ◽  
Author(s):  
T. Kimura ◽  
H. Iketani ◽  
K. Kotobuki ◽  
N. Matsuta ◽  
Y. Ban ◽  
...  

2019 ◽  
Vol 20 (2) ◽  
pp. 57
Author(s):  
Christine Bawaeda Sitandung Kombong ◽  
Tuty Arisuryanti

Stripped snakehead (Channa striata Bloch,1793) has potency to be developed in Indonesia due to high nutritional value including omega 3 which is useful for children growth. However, study on composition of mitochondrial DNA nucleotide as a part of study on genetic characterization of stripped snakehead fish in Indonesia is poorlyunderstood. Genetic characterization of stripped snakehead is important to obtain data information that can be applied for breeding and conservation program. Therefore, the objective of this study was to determine the 16S and COI mitochondrial DNA nucleotide of stripped snakehead collected from Lake Sentani, Jayapura, Papua. Method used in this research is PCR method using primer 16Sar and 16Sbr for 16S mitochondrial gene, and FishF2 and FishR2 for COI mitochondrial gene. The results showed that composition of 16S mtDNA nucleotide from 616 bp was T=21.92%, C=25.49%, A=30.19%, dan G=22.40%, whereas composition of A+T=52.11% and G+C=47.89%. In addition, composition of COI mtDNA nucleotide from 705 bp was T=29.93%, C=28.65%, A=24.26%, and G=17.16% while composition of A+T=54.48% and G+C=45.52%. Data of 16S and COI mitochondrial DNA nucleotide composition of the stripped snakehead collected from Lake Sentani gained in this study are to be expected to complete genetic information of the fish species which is useful to improve breeding program of this fish species in the future.


2020 ◽  
Vol 96 (7) ◽  
Author(s):  
Emilie Lefèvre ◽  
Courtney M Gardner ◽  
Claudia K Gunsch

ABSTRACT Due to the sequence homology between the bacterial 16S rRNA gene and plant chloroplast and mitochondrial DNA, the taxonomic characterization of plant microbiome using amplicon-based high throughput sequencing often results in the overwhelming presence of plant-affiliated reads, preventing the thorough description of plant-associated microbial communities. In this work we developed a PCR blocking primer assay targeting the taxonomically informative V5-V6 region of the 16S rRNA gene in order to reduce plant DNA co-amplification, and increase diversity coverage of associated prokaryotic communities. Evaluation of our assay on the characterization of the prokaryotic endophytic communities of Zea mays, Pinus taeda and Spartina alternifora leaves led to significantly reducing the proportion of plant reads, yielded 20 times more prokaryotic reads and tripled the number of detected OTUs compared to a commonly used V5-V6 PCR protocol. To expand the application of our PCR-clamping assay across a wider taxonomic spectrum of plant hosts, we additionally provide an alignment of chloroplast and mitochondrial DNA sequences encompassing more than 200 terrestrial plant families as a supporting tool for customizing our blocking primers.


2013 ◽  
Vol 26 (1) ◽  
pp. 68-74 ◽  
Author(s):  
Jyoti Sati ◽  
Rohit Kumar ◽  
Prabhati Kumari Sahoo ◽  
Rabindar S. Patiyal ◽  
Shahnawaz Ali ◽  
...  

2015 ◽  
Vol 17 (2) ◽  
pp. 134-139 ◽  
Author(s):  
Muhammad Hassan Siddiqi ◽  
Tanveer Akhtar ◽  
Allah Rakha ◽  
Ghazanfar Abbas ◽  
Akram Ali ◽  
...  

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