Identification and association analysis of several hundred single nucleotide polymorphisms within candidate genes for back fat thickness in Italian Large White pigs using a selective genotyping approach1

2012 ◽  
Vol 90 (8) ◽  
pp. 2450-2464 ◽  
Author(s):  
L. Fontanesi ◽  
G. Galimberti ◽  
D. G. Calò ◽  
R. Fronza ◽  
P. L. Martelli ◽  
...  
Keyword(s):  
Single Nucleotide Polymorphisms ◽  
Candidate Genes ◽  
Association Analysis ◽  
Selective Genotyping ◽  
Nucleotide Polymorphisms ◽  
Large White ◽  
Single Nucleotide ◽  
Fat Thickness

scholarly journals Association analysis of single nucleotide polymorphisms in candidate genes with root traits in maize (Zea mays L.) seedlings

Plant Science ◽  
2014 ◽  
Vol 224 ◽  
pp. 9-19 ◽  
Author(s):  
Bharath Kumar ◽  
Adel H. Abdel-Ghani ◽  
Jordon Pace ◽  
Jenaro Reyes-Matamoros ◽  
Frank Hochholdinger ◽  
...  
Keyword(s):  
Zea Mays ◽  
Single Nucleotide Polymorphisms ◽  
Candidate Genes ◽  
Association Analysis ◽  
Zea Mays L ◽  
Root Traits ◽  
Nucleotide Polymorphisms ◽  
Single Nucleotide

scholarly journals Associations of fifty single nucleotide polymorphisms within candidate genes with meatness in pigs

2014 ◽  
Vol 59 (No. 5) ◽  
pp. 227-237 ◽  
Author(s):  
A. Borowska ◽  
T. Szwaczkowski ◽  
M. Koćwin-Podsiadła ◽  
S. Kamiński ◽  
A. Ruść ◽  
...  
Keyword(s):  
Single Nucleotide Polymorphisms ◽  
Candidate Genes ◽  
Linear Model ◽  
Generalized Linear Model ◽  
Continuous Variable ◽  
Chromosome 1 ◽  
Nucleotide Polymorphisms ◽  
Entropy Analysis ◽  
Large White ◽  
Single Nucleotide

The objective of the paper was to classify 50 SNPs (from 17 chromosomes) according to their contribution to the meatness of 293 boars of two breeds (Polish Landrace and Polish Large White) using entropy analysis and standard association analysis. The collected data were classified into two groups (according to the official EUROP procedure) and used for entropy analysis. Associations of single genotypes versus their groups (located at single chromosomes) with the trait studied were estimated by the use of the Generalized Linear Model (GLM). Thus meatness was included as a continuous variable. The most important contributions have been estimated by both approaches for the following SNPs: SULT1A1:g.76G>A (SSC3), PKLR:g.384C>T (SSC4), MYOD1:c.566G>C (SSC2), TNNT3:g.153T>C (SSC2), GAA:g.38T>C (SSC12), LDLRR1:c.459A>G (SSC8), MYF6:g.255T>C (SSC5), CAS:g.499A>C (SSC2), PPARGC:c.678T>A (SSC15). Moreover, interactions among some studied loci are suggested, especially for the loci at chromosome 1.  

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