Long-Term Sperm Storage in the Desert Tortoise (Gopherus agassizii)

Copeia ◽  
1998 ◽  
Vol 1998 (3) ◽  
pp. 702 ◽  
Author(s):  
Kevin S. Palmer ◽  
David C. Rostal ◽  
Janice S. Grumbles ◽  
Margaret Mulvey
Keyword(s):  
Sperm Storage ◽  
Gopherus Agassizii ◽  
Desert Tortoise

The effect of research activities and winter precipitation on voiding behaviour of Agassiz’s desert tortoises (Gopherus agassizii)

2014 ◽  
Vol 41 (8) ◽  
pp. 641 ◽  
Author(s):  
Mickey Agha ◽  
Mason O. Murphy ◽  
Jeffrey E. Lovich ◽  
Joshua R. Ennen ◽  
Christian R. Oldham ◽  
...  
Keyword(s):  
Stress Responses ◽  
Handling Time ◽  
Winter Precipitation ◽  
Contact Period ◽  
Gopherus Agassizii ◽  
Desert Tortoise ◽  
Defensive Strategy ◽  
Survivorship Analysis ◽  
Research Activities

Context There is little information available on how research activities might cause stress responses in wildlife, especially responses of threatened species such as the desert tortoise (Gopherus agassizii). Aims The present study aims to detect behavioural effects of researcher handling and winter precipitation on a natural population of desert tortoises in the desert of Southwestern United States, over the period 1997 to 2014, through extensive assessments of capture events during multiple research studies, and capture–mark–recapture survivorship analysis. Methods Juvenile and adult desert tortoises were repeatedly handled with consistent methodology across 18 years during 10 study seasons. Using a generalised linear mixed-effects model, we assessed the effects of both research manipulation and abiotic conditions on probability of voiding. Additionally, we used a Cormack–Jolly–Seber model to assess the effects of winter precipitation and voiding on long-term apparent survivorship. Key results Of 1008 total capture events, voiding was recorded on 83 (8.2%) occasions in 42 different individuals. Our top models indicated that increases in handling time led to significantly higher probabilities of voiding for juveniles, females and males. Similarly, increases in precipitation resulted in significantly higher probabilities of voiding for juveniles and females, but not for males. Tortoise capture frequency was negatively correlated with voiding occurrence. Cormack–Jolly–Seber models demonstrated a weak effect of winter precipitation on survivorship, but a negligible effect for both voiding behaviour and sex. Conclusions Handling-induced voiding by desert tortoises may occur during common research activities and years of above average winter precipitation. Increased likelihood of voiding in individuals with relatively low numbers of recaptures suggested that tortoises may have perceived researchers initially as predators, and therefore voided as a defensive strategy. Voiding does not appear to impact long-term survivorship in desert tortoises at this site. Implications This study has demonstrated that common handling practices on desert tortoise may cause voiding behaviour. These results suggest that in order to minimise undesirable behavioural responses in studied desert tortoise populations, defined procedures or protocols must be followed by the investigators to reduce contact period to the extent feasible.

Seasonal Reproductive Cycle of the Desert Tortoise (Gopherus agassizii) in the Eastern Mojave Desert

1994 ◽  
Vol 8 ◽  
pp. 72 ◽  
Author(s):  
David C. Rostal ◽  
Valentine A. Lance ◽  
Janice S. Grumbles ◽  
Allison C. Alberts
Keyword(s):  
Reproductive Cycle ◽  
Mojave Desert ◽  
Gopherus Agassizii ◽  
Desert Tortoise

scholarly journals Improved draft of the Mojave Desert tortoise genome, Gopherus agassizii, version 1.1

2017 ◽  
Author(s):  
Timothy H Webster ◽  
Greer A. Dolby ◽  
Melissa Wilson Sayres ◽  
Kenro Kusumi
Keyword(s):  
Threatened Species ◽  
Mojave Desert ◽  
Gene Annotation ◽  
Draft Genome ◽  
Gopherus Agassizii ◽  
Desert Tortoise ◽  
Draft Genome Assembly ◽  
Initial Release ◽  
Exogenous Sequence ◽  
Mojave Desert Tortoise

Exogenous sequence contamination presents a challenge in first-draft genomes because it can lead to non-contiguous, chimeric assembled sequences. This can mislead downstream analyses reliant on synteny, such as linkage-based analyses. Recently, the Mojave Desert Tortoise (Gopherus agassizii) draft genome was published as a resource to advance conservation efforts for the threatened species and discover more about chelonian biology and evolution. Here, we illustrate steps taken to improve the desert tortoise draft genome by removing contaminating sequences—actions that are typically carried out after the initial release of a draft genome assembly. We used information from NCBI’s Vecscreen output to remove intra-scaffold contamination and trim heading and trailing Ns. We then reordered and renamed scaffolds, and transferred the gene annotation onto this assembly. Finally, we describe the tools developed for this pipeline, freely available on Github (https://github.com/thw17/G_agassizii_reference_update), which facilitate post-assembly processing of other draft genomes. The new gopAga1.1 genome has an N50 of 251 KB, L50 of 2592 scaffolds, and its annotation retains 17,201 of the original 20,172 genes that were unaffected by the scaffold processing.

scholarly journals Improved draft of the Mojave Desert tortoise genome, Gopherus agassizii, version 1.1

2018 ◽  
Author(s):  
Timothy H Webster ◽  
Greer A Dolby ◽  
Melissa A Wilson Sayres ◽  
Kenro Kusumi
Keyword(s):  
Threatened Species ◽  
Mojave Desert ◽  
Gene Annotation ◽  
Draft Genome ◽  
Gopherus Agassizii ◽  
Desert Tortoise ◽  
Draft Genome Assembly ◽  
Initial Release ◽  
Exogenous Sequence ◽  
Mojave Desert Tortoise

Exogenous sequence contamination presents a challenge in first-draft genomes because it can lead to non-contiguous, chimeric assembled sequences. This can mislead downstream analyses reliant on synteny, such as linkage-based analyses. Recently, the Mojave Desert Tortoise (Gopherus agassizii) draft genome was published as a resource to advance conservation efforts for the threatened species and discover more about chelonian biology and evolution. Here, we illustrate steps taken to improve the desert tortoise draft genome by removing contaminating sequences—actions that are typically carried out after the initial release of a draft genome assembly. We used information from NCBI’s Vecscreen output to remove intra-scaffold contamination and trim heading and trailing Ns. We then reordered and renamed scaffolds, and transferred the gene annotation onto this assembly. Finally, we describe the tools developed for this pipeline, freely available on Github (https://github.com/thw17/G_agassizii_reference_update), which facilitate post-assembly processing of other draft genomes. The new gopAga1.1 genome has an N50 of 251 kb, L50 of 2592 scaffolds, and its annotation retains 17,201 of the original 20,172 genes that were unaffected by the scaffold processing.

Interaction of Epididymal Epithelia and their Secretions with Spermatozoa Supports Functional and Morphological Changes During Long-Term Storage in the Chinese Soft-Shelled Turtle (Pelodiscus sinensis)

2020 ◽  
Vol 26 (3) ◽  
pp. 542-550
Author(s):  
Imran Tarique ◽  
Mansoor Tariq ◽  
Xuebing Bai ◽  
Qu Wenjia ◽  
Ping Yang ◽  
...  
Keyword(s):  
Electron Density ◽  
Morphological Changes ◽  
Storage Period ◽  
Sperm Storage ◽  
Synthetic Activity ◽  
High Electron ◽  
Pelodiscus Sinensis ◽  
Clear Cells ◽  
Long Term Storage

AbstractPost-testicular maturation of spermatozoa is crucial for attaining the morphological and functional capabilities needed for successful fertilization. Epididymal epithelia offer a favorable environment for spermatozoa that are stored long term in the turtle epididymis; however, sperm–epithelial interactions during storage, which are enormously important for sperm functional and morphological maturation, are still largely unknown in turtles. The present study examined the epididymis during the sperm-storage period (November–April) in the Chinese soft-shelled turtle (Pelodiscus sinensis). Light and transmission electron microscopy were used to determine the cellular features of each epididymal segment (caput, corpus, and cauda) and their epithelial interactions with the spermatozoa. Spermatozoa were mainly located in the lumena of caput, corpus, and cauda epididymides. Numerous spermatozoa were bound to apical surfaces of the epithelia, and several were even embedded in the epithelial cytoplasm of the caput and corpus epididymides. No embedded spermatozoa were found in the cauda epididymis. In all epididymal segments, principal and clear cells showed the synthetic activity, evidenced by a well-developed endoplasmic reticulum network and high and low electron-dense secretory materials, respectively. Principal and clear cells in the caput and corpus segments showed embedded spermatozoa in electron-dense secretions and in the lipid droplets within the cytoplasm. No lysosomes were observed around the embedded spermatozoa. The lumena of the caput and corpus segments showed few apocrine and low electron density secretions. In the lumen of the cauda epididymidis, different secretions, such as holocrine with low and high electron density and their fragmentation, apocrine, and dictyosome, were found and are summarized. Altogether, sperm physical interactions with secretions either in the cytoplasm of epithelium or in the lumen may support the viability, morphological maintenance, and transfer of various proteins involved in long-term sperm storage in the turtle. This interaction could help us to understand the mechanisms of long-term sperm storage and provide more insights into the reproductive strategies of turtle sperm preservation.

scholarly journals Immune and sex-biased gene expression in the threatened Mojave desert tortoise, Gopherus agassizii

PLoS ONE ◽  
2020 ◽  
Vol 15 (8) ◽  
pp. e0238202
Author(s):  
Cindy Xu ◽  
Greer A. Dolby ◽  
K. Kristina Drake ◽  
Todd C. Esque ◽  
Kenro Kusumi
Keyword(s):  
Gene Expression ◽  
Mojave Desert ◽  
Gopherus Agassizii ◽  
Desert Tortoise ◽  
Mojave Desert Tortoise

scholarly journals Mojave desert tortoise (Gopherus agassizii) thermal ecology and reproductive success along a rainfall cline

2015 ◽  
Vol 10 (3) ◽  
pp. 282-294 ◽  
Author(s):  
Annette E. SIEG ◽  
Megan M. GAMBONE ◽  
Bryan P. WALLACE ◽  
Susana CLUSELLA-TRULLAS ◽  
James R. SPOTILA ◽  
...  
Keyword(s):  
Reproductive Success ◽  
Mojave Desert ◽  
Thermal Ecology ◽  
Gopherus Agassizii ◽  
Desert Tortoise ◽  
Mojave Desert Tortoise

Multiple paternity in a natural population of a salamander with long-term sperm storage

2005 ◽  
Vol 14 (6) ◽  
pp. 1803-1810 ◽  
Author(s):  
ERIKA M. ADAMS ◽  
ADAM G. JONES ◽  
STEVAN J. ARNOLD
Keyword(s):  
Natural Population ◽  
Multiple Paternity ◽  
Sperm Storage
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