scholarly journals High proportion of mixed virus infections in raspberry plantations in Serbia

2020 ◽  
Vol 35 (1) ◽  
pp. 27-37
Author(s):  
Svetlana Paunovic ◽  
Darko Jevremovic
Keyword(s):  
Rubus Idaeus ◽  
Mixed Infections ◽  
Black Raspberry ◽  
Virus Infections ◽  
Red Raspberry ◽  
Rt Pcr ◽  
Necrosis Virus ◽  
Specific Primers ◽  
Leaf Blotch ◽  
First Time

Samples of red raspberry (Rubus idaeus L.) from the most important growing areas in Serbia were analyzed for the presence of four most important raspberry viruses: raspberry leaf blotch virus (RLBV), raspberry leaf mottle virus (RLMV), black raspberry necrosis virus (BRNV) and Rubus yellow net virus (RYNV), and their incidence in individual and mixed infected samples. Seventy-four samples of eight raspberry cultivars, selected from 32 main cultivation sites were tested, of which 62 leaf samples showed symptoms that could be caused by viruses and 12 samples were asymptomatic. The presence of viruses was tested by appropriate RT-PCR and PCR methods, using virus-specific primers. All four viruses were detected with highly significant differences of incidence in a total of 61 infected symptomatic samples. Infection with one of the four tested viruses was detected in 59.0% of all infected samples. The most prevalent was RLBV, which was associated with raspberry leaf blotch disorder in coexistence with its vector raspberry leaf and bud mite P. gracillis, and it was detected in 70.5% of the infected samples. It was followed by RYNV with an incidence of 42.6%, BRNV with 36.1% and RLMV with 9.8% incidence, considering all infected samples. The obtained results for the first time in Serbia showed a high proportion (41.0%) of mixed infections involving between two and four viruses. The most common were infections with two viruses, 68.0% of all mixed-infected samples, and among them coinfections with RLBV and RYNV (44.0%). Viruses of the raspberry mosaic complex, BRNV, RYNV and RLMV, including coinfections of 2-3 listed viruses along with RLBV, were found in a high joined proportion of 14.7% of all infected samples, i.e. 36.0% of mixed infected samples.

scholarly journals Combining QTL Mapping and Gene Expression Analysis to Elucidate the Genetic Control of ‘Crumbly’ Fruit in Red Raspberry (Rubus idaeus L.)

Agronomy ◽  
2021 ◽  
Vol 11 (4) ◽  
pp. 794
Author(s):  
Luca M. Scolari ◽  
Robert D. Hancock ◽  
Pete E. Hedley ◽  
Jenny Morris ◽  
Kay Smith ◽  
...  
Keyword(s):  
Genetic Control ◽  
Developmental Disorder ◽  
Molecular Mechanisms ◽  
Developmental Stages ◽  
Microarray Experiment ◽  
Rubus Idaeus ◽  
Red Raspberry ◽  
Genotype By Sequencing ◽  
First Time ◽  
Selection Of

‘Crumbly’ fruit is a developmental disorder in raspberry that results in malformed and unsaleable fruits. For the first time, we define two distinct crumbly phenotypes as part of this work. A consistent crumbly fruit phenotype affecting the majority of fruits every season, which we refer to as crumbly fruit disorder (CFD) and a second phenotype where symptoms vary across seasons as malformed fruit disorder (MFD). Here, segregation of crumbly fruit of the MFD phenotype was examined in a full-sib family and three QTL (Quantitative Trait Loci) were identified on a high density GbS (Genotype by Sequencing) linkage map. This included a new QTL and more accurate location of two previously identified QTLs. A microarray experiment using normal and crumbly fruit at three different developmental stages identified several genes that were differentially expressed between the crumbly and non-crumbly phenotypes within the three QTL. Analysis of gene function highlighted the importance of processes that compromise ovule fertilization as triggers of crumbly fruit. These candidate genes provided insights regarding the molecular mechanisms involved in the genetic control of crumbly fruit in red raspberry. This study will contribute to new breeding strategies and diagnostics through the selection of molecular markers associated with the crumbly trait.

scholarly journals Effect of Raspberry bushy dwarf virus, Raspberry leaf mottle virus, and Raspberry latent virus on Plant Growth and Fruit Crumbliness in ‘Meeker’ Red Raspberry

Plant Disease ◽  
2014 ◽  
Vol 98 (2) ◽  
pp. 176-183 ◽  
Author(s):  
Diego F. Quito-Avila ◽  
Danielle Lightle ◽  
Robert R. Martin
Keyword(s):  
British Columbia ◽  
The United States ◽  
Fruit Weight ◽  
Rubus Idaeus ◽  
Latent Virus ◽  
Dwarf Virus ◽  
Mottle Virus ◽  
Mixed Infections ◽  
Red Raspberry ◽  
Raspberry Bushy Dwarf Virus

Raspberry crumbly fruit in red raspberry (Rubus idaeus), widespread in the Pacific Northwest of the United States and British Columbia, Canada, is most commonly caused by a virus infection. Raspberry bushy dwarf virus (RBDV) has long been attributed as the causal agent of the disease. Recently, the identification of two additional viruses, Raspberry leaf mottle virus (RLMV) and Raspberry latent virus (RpLV), in northern Washington and British Columbia, suggested the existence of a possible new virus complex responsible for the increased severity of the disease. Virus testing of crumbly fruited plants from five fields in northern Washington revealed the presence of RLMV and RpLV, in addition to RBDV. Plants with less severe crumbly fruit symptoms had a much lower incidence of RLMV or RpLV. Field trials using replicated plots of ‘Meeker’ plants containing single and mixed infections of RBDV, RLMV, or RpLV, along with a virus-free control, were developed to determine the role of RLMV and RpLV in crumbly fruit. Field evaluations during establishment and two fruiting years revealed that plants infected with the three viruses or the combinations RBDV+RLMV and RBDV+RpLV had the greatest reduction in cane growth, or fruit firmness and fruit weight, respectively. Quantitative reverse transcription–polymerase chain reaction (RT-PCR) showed that the titer of RBDV was increased ~400-fold when it occurred in mixed infections with RLMV compared to RBDV in single infections. In addition, a virus survey revealed that RLMV and RpLV are present at high incidence in northern Washington; whereas the incidence in southern Washington and Oregon, where crumbly fruit is not as serious a problem, was considerably lower.

scholarly journals Genetic Diversity in Black Raspberry Detected by RAPD Markers

HortScience ◽  
2003 ◽  
Vol 38 (2) ◽  
pp. 269-272 ◽  
Author(s):  
C.A. Weber
Keyword(s):  
Genetic Diversity ◽  
Rapd Markers ◽  
Fruit Production ◽  
Rubus Idaeus ◽  
Limiting Factor ◽  
Black Raspberry ◽  
Red Raspberry ◽  
Average Similarity ◽  
Improved Cultivars ◽  
Maximum Similarity

Lack of variation among black raspberry cultivars is thought to be a limiting factor in fruit production and in breeding improved cultivars. An assessment of the available diversity in black raspberry is needed to effectively develop improved cultivars. Such an assessment was done to estimate the genetic similarities for RAPD markers in 16 black raspberry genotypes and to determine the genetic diversity among these genotypes based on these markers. In addition, the ability to distinguish between the black raspberry genotypes, two red raspberry cultivars (Rubus idaeus L.), and a blackberry cultivar (Rubus hybrid) was determined. A similarity matrix from 379 RAPD markers was calculated, and a phylogenetic tree was constructed using the PHYLIP suite of phylogeny software, which revealed the relationship among the genotypes. An average of 81% similarity was calculated among 16 black raspberry genotypes with a maximum similarity of 98% and a minimum of 70%. The average similarity between black raspberry and red raspberry was 41% and was 26% between black raspberry and blackberry. Combined marker profiles from six RAPD primers could be used to distinguish between the 16 black raspberry genotypes. Red raspberry and blackberry could be distinguished from black raspberry by 27 and 29 of 30 RAPD primers tested, respectively. Genetic diversity was most prominent in genotypes from the extremes of the black raspberry indigenous range. Diversifying the germplasm pool for black raspberry cultivar improvement can be achieved through utilizing genotypes from the extremes of the black raspberry range and through interspecific hybridization.

scholarly journals Detection of Citrus Bent Leaf Viroid in Citrus Orchards of Sargodha, Pakistan

2021 ◽  
Vol 39 (2) ◽  
pp. 159-163
Author(s):  
Faheema Bakhtawar ◽  
◽  
Yasir Iftikhar ◽  
Muhammad Ahmed Zeshan ◽  
Muhammad Imran Hamid ◽  
...  
Keyword(s):  
Molecular Detection ◽  
Disease Incidence ◽  
Mean Value ◽  
Rt Pcr ◽  
Specific Primers ◽  
Citrus Orchards ◽  
The Mean ◽  
Citrus Varieties ◽  
Near Future ◽  
First Time

A study was conducted to monitor the Citrus bent leaf viroid (CBLVd) in citrus growing areas of district Sargodha, Pakistan during 2017-2018. Collected samples were tested by RT-PCR using specific primers. PCR positive samples were used to confirm the CBLVd incidence and severity on different citrus varieties grown at different regions of Sargodha. Maximum disease incidence was recorded in Kot Momin with the mean value of 24%, with severe symptoms of bark cracking, backward leaf bent and stunting. Minimum disease incidence was recorded in in Sillanwali region with the mean value of 3.33%. The symptoms in Sillanwali were only yellowing and slight leaf bent. Maximum severity was observed in Kot momin (0.60%). Molecular detection of CBLVd by RT-PCR confirmed the diagnosis of the viroid. This survey was carried out for the first time in Sargodha district to monitor the occurrence of citrus bent leaf viroid following the first report of its detection in Pakistan in 2009. Since many declining citrus trees were found negative to CBLVd testing, other causal agents can be involved, and extensive surveys are still required in the near future. Keywords: Citrus, RT-PCR, CBLVd, Disease incidence, viroid, Sargodha, Pakistan

scholarly journals First Report of Raspberry bushy dwarf virus on Red Raspberry and Grapevine in Slovenia

Plant Disease ◽  
2003 ◽  
Vol 87 (9) ◽  
pp. 1148-1148 ◽  
Author(s):  
I. Mavrič ◽  
M. Viršček Marn ◽  
D. Koron ◽  
I. Žežlina
Keyword(s):  
Polyclonal Antiserum ◽  
Rubus Idaeus ◽  
Dwarf Virus ◽  
Enzyme Linked Immunosorbent Assay ◽  
Natural Occurrence ◽  
Red Raspberry ◽  
Rt Pcr ◽  
First Report ◽  
Raspberry Bushy Dwarf Virus ◽  
Das Elisa

In 2002, severe vein yellowing and partial or complete yellowing of leaves was observed on some shoots of red raspberry (Rubus idaeus) cvs. Golden Bliss and Autumn Bliss. Sap of infected plants of cv. Golden Bliss was inoculated onto Chenopodium quinoa and Nicotiana benthamiana. Faint chlorotic spots were observed on inoculated leaves of C. quinoa approximately 14 days after inoculation but no systemic symptoms appeared. No symptoms were observed on N. benthamiana. Raspberry bushy dwarf virus (RBDV) was detected in the original raspberry plant using double-antibody sandwich enzyme-linked immunosorbent assay (DAS-ELISA) with polyclonal antiserum (Loewe Biochemica, Sauerlach, Germany). Systemic infections of inoculated C. quinoa and N. benthaminana were confirmed using DAS-ELISA. In 2001 and 2002, unusual virus symptoms were observed on grapevine grafts (Vitis vinifera) of cv. Laški Rizling. Symptoms appeared as curved line patterns and yellowing of the leaves. No nepoviruses were found in symptomatic plants, but RBDV was confirmed using DAS-ELISA. RBDV infection was later confirmed in grapevine cv. Štajerska Belina with similar symptoms. RBDV was transmitted mechanically from grapevine to C. quinoa where it was detected by immunocapture-reverse transcription-polymerase chain reaction (IC-RT-PCR). IC-RT-PCR was used to amplify a part of the coat protein gene of the virus from raspberry and grapevine, and the amplification products were sequenced (1). The obtained sequence shared at least 93% nucleotide sequence identity with other known RBDV sequences, which confirmed the serological results. To our knowledge, this is the first report of the natural occurrence of RBDV in grapevine and also of RBDV infection of red raspberry in Slovenia. Reference: (1) H. I. Kokko et al. Biotechniques 20:842, 1996.

scholarly journals 180 GENETIC TRANSFORMATION OF RED RASPBERRY (RUBUS IDAEUS L.) WITH A GENE TO CONTROL ETHYLENE BIOSYNTHESIS

HortScience ◽  
1994 ◽  
Vol 29 (5) ◽  
pp. 454f-454 ◽  
Author(s):  
Helena Mathews ◽  
C. Cohen ◽  
W. Wagoner ◽  
J. Kellogg ◽  
V. Dewey ◽  
...  
Keyword(s):  
Marker Gene ◽  
Ethylene Biosynthesis ◽  
Rubus Idaeus ◽  
Selection Marker ◽  
Red Raspberry ◽  
Leaf Petiole ◽  
Selection Medium ◽  
Recycling Pathway ◽  
Transformation Systems ◽  
First Time

We have developed efficient plant rageneration and transformation systems for red raspberry (Rubus idaeus L.). We have successfully introduced a gene for controlling biosynthesis of ethylene into raspberry for the first time. Leaf and petiole segments were co-cultivated with disarmed Agrobacterium strains EHA 101 or 105 containing plasmids pAG5420, pAG 1452 or pAG1552. The plasmids encoded gene sequences for S-adenosylmethionine hydrolase (SAM ase) driven by the fruit specific or wound and fruit specific tomato SE8 or E4 promoters. SAM ase catalyses the conversion of S-adenosylmethionine (SAM) to methylthioadenosine (MTA) and homoserine which can reenter the methionine recycling pathway. SAM is therefore not available for the synthesis of 1-am inocyclopropane carboxylic acid (ACC), the metabolic precursor for ethylene biosynthesis. Initial shoot regenerants were mostly chimeras containing transformed and non-transformed cells. Solid clones of pure transgenics were developed by repeated culture of leaf, petiole and nodal explants of primary regenerants on higher stringency selection medium. Transformants were screened on medium with kanamycin, geneticin or hygromycin depending on the selection marker gene NPTII or hpt. Genomic integration of transgenes were confirmed by Southern hybridization. Transgenic plants of cultivars Canby, Meeker and Chilliwack have been transplanted to the greenhouse for fruit set and further evaluation of transgenic traits.

scholarly journals Occurrence and molecular analysis of quarantine virus in lily cultivation areas in Brazil

2016 ◽  
Vol 51 (5) ◽  
pp. 615-622 ◽  
Author(s):  
Eliana Borges Rivas ◽  
Estevão Cardoso de Almeida Bôdi ◽  
Ricardo Harakava ◽  
Fabio Gregori ◽  
Marcos Cesar Gonçalves
Keyword(s):  
Mottle Virus ◽  
Mixed Infections ◽  
Coat Proteins ◽  
Rt Pcr ◽  
Tree Reconstruction ◽  
Specific Primers ◽  
Lily Symptomless Virus ◽  
Tulip Breaking Virus ◽  
Genes Encoding ◽  
Prevalent Virus

Abstract: The objective of this work was to describe the occurrence of quarantine Tulip breaking virus (TBV, synonym Lily mottle virus - LMoV) and Lily symptomless virus (LSV), and their respective molecular analyses, to provide data for supporting TBV removal from the Brazilian A1 quarantine pest list, since this virus has spread among the main commercial lily crops in Brazil. The occurrence of these viruses was detected in 12 cultivation areas through multiplex reverse transcription (RT-PCR), using specific primers to genes encoding the respective coat proteins (CP). Eight fragments of 800 nucleotides (nt) obtained from the LMoV-infected lilies and nine fragments of 600 nt from LSV-infected lilies were sequenced. Phylogenetic tree reconstruction showed a robust branch containing the LMoV Brazilian sequences, other LMoV isolates, TBV, and Tulip band breaking virus, suggesting that all are LMoV isolates, although they are clustered into two subgroups. Phylogenetic analysis also showed a robust branch supporting all Brazilian and other LSV sequences, except for an LSV Japanese isolate. Recombination analyses also showed an LMoV recombinant isolate, whereas no recombination events were found among LSV isolates. Lily mottle virus is the prevalent virus in lily crops in Brazil, in single and mixed infections with LSV or Cucumber mosaic virus (CMV).

STUDIES ON RUBUS VIRUS DISEASES IN BRITISH COLUMBIA: VIII. RASPBERRY LEAF CURL

1962 ◽  
Vol 40 (5) ◽  
pp. 651-657 ◽  
Author(s):  
Richard Stace-Smith
Keyword(s):  
British Columbia ◽  
Virus Disease ◽  
Rubus Idaeus ◽  
Access Time ◽  
Black Raspberry ◽  
Red Raspberry ◽  
Experimental Conditions ◽  
Indicator Plants ◽  
Leaf Curl Virus ◽  
Leaf Curl

A virus disease that occurs on red raspberry in the Okanagan Valley in British Columbia was identified as raspberry leaf curl. Under experimental conditions the virus was transmitted by the aphid Aphis idaci V. d.G. Test plants included red raspberry, Rubus idaeus L.; black raspberry, Rubus occidentalis L.; wineberry, Rubus phoenicolasius Maxim.; Rubus henryi Hemsl. & Kuntse; and the Alpine strawberry, Fragaria vesca L. The virus did not infect black raspberry and caused only transitory symptoms on Alpine strawberry. Root cuttings of red raspberry, leaf-bud cuttings of R. henryi, and seedlings of wineberry provided satisfactory indicator plants. Wineberry and R. henryi were more readily inoculated by aphids than red raspberry. Non-viruliferous aphids required a feed of at least 1 day on the virus source to acquire an infective charge. When viruliferous aphids were transferred to a series of healthy indicator plants, some plants became infected after a test access time of 20 minutes, although transmissions were increased if the time was increased to 1 hour. The virus was found to persist in viruliferous aphids for at least 11 days. Leaf curl virus was not eliminated from infected plants held at an air temperature of 37 °C for periods up to 4 weeks.

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