scholarly journals Massive nucleotide sequence data analysis reveals the nature of viruses

Uirusu ◽  
2020 ◽  
Vol 70 (1) ◽  
pp. 45-48
Author(s):  
So NAKAGAWA
Keyword(s):  
Data Analysis ◽  
Nucleotide Sequence ◽  
Sequence Data ◽  
Nucleotide Sequence Data

scholarly journals Bacterial genomes in epidemiology—present and future

2013 ◽  
Vol 368 (1614) ◽  
pp. 20120202 ◽  
Author(s):  
Nicholas J. Croucher ◽  
Simon R. Harris ◽  
Yonatan H. Grad ◽  
William P. Hanage
Keyword(s):  
Data Analysis ◽  
High Resolution ◽  
Nucleotide Sequence ◽  
Sequence Data ◽  
Genomic Data ◽  
Bacterial Genomes ◽  
Viral Pathogens ◽  
Nucleotide Sequence Data ◽  
Genomic Epidemiology ◽  
Sequencing Platforms

Sequence data are well established in the reconstruction of the phylogenetic and demographic scenarios that have given rise to outbreaks of viral pathogens. The application of similar methods to bacteria has been hindered in the main by the lack of high-resolution nucleotide sequence data from quality samples. Developing and already available genomic methods have greatly increased the amount of data that can be used to characterize an isolate and its relationship to others. However, differences in sequencing platforms and data analysis mean that these enhanced data come with a cost in terms of portability: results from one laboratory may not be directly comparable with those from another. Moreover, genomic data for many bacteria bear the mark of a history including extensive recombination, which has the potential to greatly confound phylogenetic and coalescent analyses. Here, we discuss the exacting requirements of genomic epidemiology, and means by which the distorting signal of recombination can be minimized to permit the leverage of growing datasets of genomic data from bacterial pathogens.

ON THE RATIONALE AND UTILITY OF WEIGHTING NUCLEOTIDE SEQUENCE DATA

Cladistics ◽  
1992 ◽  
Vol 8 (1) ◽  
pp. 73-83 ◽  
Author(s):  
Victor A. Albert ◽  
Brent D. Mishler
Keyword(s):  
Nucleotide Sequence ◽  
Sequence Data ◽  
Nucleotide Sequence Data

A new method for RAPD primers selection based on primer bias in nucleotide sequence data

2006 ◽  
Vol 126 (4) ◽  
pp. 415-423 ◽  
Author(s):  
J.J. Li ◽  
G.L. Pei ◽  
H.X. Pang ◽  
A. Bilderbeck ◽  
S.S. Chen ◽  
...  
Keyword(s):  
Nucleotide Sequence ◽  
Sequence Data ◽  
New Method ◽  
Nucleotide Sequence Data

The EMBL nucleotide sequence data library

1984 ◽  
Vol 12 (6) ◽  
pp. 1011-1014 ◽  
Author(s):  
G. G. KNEALE ◽  
OLGA KENNARD
Keyword(s):  
Nucleotide Sequence ◽  
Sequence Data ◽  
Nucleotide Sequence Data ◽  
Data Library
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