scholarly journals A Web Server for Multi-objective Pairwise RNA Sequence Alignment with an Index for Selecting Accurate Alignments

2011 ◽  
Vol 4 ◽  
pp. 2-8 ◽  
Author(s):  
Akito Taneda
Keyword(s):  
Sequence Alignment ◽  
Web Server ◽  
Rna Sequence ◽  
Multi Objective

scholarly journals Multi-objective pairwise RNA sequence alignment

2010 ◽  
Vol 26 (19) ◽  
pp. 2383-2390 ◽  
Author(s):  
Akito Taneda
Keyword(s):  
Sequence Alignment ◽  
Rna Sequence ◽  
Multi Objective

Comparing multi-objective metaheuristics for solving a three-objective formulation of multiple sequence alignment

2017 ◽  
Vol 6 (3) ◽  
pp. 195-210 ◽  
Author(s):  
Cristian Zambrano-Vega ◽  
Antonio J. Nebro ◽  
José García-Nieto ◽  
José F. Aldana-Montes
Keyword(s):  
Sequence Alignment ◽  
Multiple Sequence Alignment ◽  
Multiple Sequence ◽  
Multi Objective

scholarly journals HAlign: Fast multiple similar DNA/RNA sequence alignment based on the centre star strategy

2015 ◽  
Vol 31 (15) ◽  
pp. 2475-2481 ◽  
Author(s):  
Quan Zou ◽  
Qinghua Hu ◽  
Maozu Guo ◽  
Guohua Wang
Keyword(s):  
Sequence Alignment ◽  
Rna Sequence

scholarly journals SARA-Coffee web server, a tool for the computation of RNA sequence and structure multiple alignments

2014 ◽  
Vol 42 (W1) ◽  
pp. W356-W360 ◽  
Author(s):  
Paolo Di Tommaso ◽  
Giovanni Bussotti ◽  
Carsten Kemena ◽  
Emidio Capriotti ◽  
Maria Chatzou ◽  
...  
Keyword(s):  
Web Server ◽  
Rna Sequence ◽  
Multiple Alignments

scholarly journals A heuristic approach for detecting RNA H-type pseudoknots

2005 ◽  
Vol 21 (17) ◽  
pp. 3501-3508 ◽  
Author(s):  
Chun-Hsiang Huang ◽  
Chin Lung Lu ◽  
Hsien-Tai Chiu
Keyword(s):  
Web Server ◽  
Heuristic Approach ◽  
Biological Processes ◽  
Rna Structures ◽  
Online Analysis ◽  
Rna Sequence ◽  
Associated Functions ◽  
Almost All ◽  
The Web

Abstract Motivation RNA H-type pseudoknots are ubiquitous pseudoknots that are found in almost all classes of RNA and thought to play very important roles in a variety of biological processes. Detection of these RNA H-type pseudoknots can improve our understanding of RNA structures and their associated functions. However, the currently existing programs for detecting such RNA H-type pseudoknots are still time consuming and sometimes even ineffective. Therefore, efficient and effective tools for detecting the RNA H-type pseudoknots are needed. Results In this paper, we have adopted a heuristic approach to develop a novel tool, called HPknotter, for efficiently and accurately detecting H-type pseudoknots in an RNA sequence. In addition, we have demonstrated the applicability and effectiveness of HPknotter by testing on some sequences with known H-type pseudoknots. Our approach can be easily extended and applied to other classes of more general pseudoknots. Availability The web server of our HPknotter is available for online analysis at http://bioalgorithm.life.nctu.edu.tw/HPKNOTTER/ Contact [email protected], [email protected]

scholarly journals SISTEM PENDUKUNG KEPUTUSAN PENILAIAN KINERJA PEGAWAI DENGAN MENGGUNAKAN METODE MULTI OBJECTIVE OPTIMIZATION ON THE BASIS OF RATIO ANALYSIS (MOORA) BERBASIS WEB PADA BADAN NARKOTIKA NASIONAL PROVINSI KALIMANTAN TIMUR

JURNAL IT ◽  
2020 ◽  
Vol 10 (2) ◽  
pp. 171-184
Author(s):  
Ita Arfyanti ◽  
Heny Pratiwi ◽  
Rahmadiansyah Zain Lamsi
Keyword(s):  
Unified Modeling Language ◽  
Web Server ◽  
Modeling Language ◽  
Ratio Analysis ◽  
Multi Objective Optimization ◽  
Unified Modeling ◽  
Multi Objective ◽  
Database Server

Tujuan dari penelitian ini adalah untuk dapat membantu dan memudahkan pihak pimpinan dalam menentukan keputusan bagi pegawai yang berprestasi dan mengurangi masalah yang dihadapi pada saat proses penilaian kinerja seperti masalah banyaknya kriteria yang digunakan pada Badan Narkotika Nasional Provinsi Kalimantan Timur. Sistem ini dibuat dengan menggunakan bahasa pemrograman PHP (Hypertext Preprocessor), Xampp sebagai local server, MySQL sebagai database server, dan Apache sebagai web server. Alat bantu pengembangan sistem menggunakan flowchart dan UML (Unified Modeling Language). Hasil dari penelitian ini adalah berupa hasil penilaian metode MOORA yang memperlihatkan urutan peringkat dari masing-masing pegawai dan bisa menjadi dasar pertimbangan untuk pihak pimpinan dalam mengambil keputusan dalam memilih pegawai yang terbaik untuk pemberian penghargaan seperti kenaikan pangkat, kenaikan gaji atau tunjangan prestasi kerja, dan promosi atau kompensasi

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