scholarly journals Fast, cost-effective development of species-specific microsatellite markers by genomic sequencing

BioTechniques ◽  
2009 ◽  
Vol 46 (3) ◽  
pp. 185-192 ◽  
Author(s):  
Jawad Abdelkrim ◽  
Bruce C. Robertson ◽  
Jo-Ann L. Stanton ◽  
Neil J. Gemmell
Keyword(s):  
Microsatellite Markers ◽  
Cost Effective ◽  
Genomic Sequencing ◽  
Species Specific ◽  
Effective Development

Evaluation of maize microsatellite markers for genetic diversity analysis and fingerprinting in sugarcane

Genome ◽  
2003 ◽  
Vol 46 (3) ◽  
pp. 394-403 ◽  
Author(s):  
A Selvi ◽  
N V Nair ◽  
N Balasundaram ◽  
T Mohapatra
Keyword(s):  
Microsatellite Markers ◽  
Cost Effective ◽  
Diversity Analysis ◽  
Phenetic Analysis ◽  
Potential Cost ◽  
Banding Patterns ◽  
Genomic Libraries ◽  
Cost Effective Method ◽  
Low Diversity ◽  
Species Specific

The use of maize microsatellite markers as a potential cost-effective method for molecular analysis of sugarcane was evaluated. Of the 34 primer pairs obtained from maize genomic libraries, 14 showed repeatable amplifications in Saccharum species clones, commercial hybrids, and the related genera Erianthus, accounting for 41.17% cross transferability. Complex banding patterns were encountered in sugarcane with the number of amplified fragments ranging from 7 to 14 with an average of 10 per primer, indicating the high polyploidy and heterozygosity existing in sugarcane. Phenetic analysis of the SSR polymorphisms produced by nine primers could clearly differentiate the different species of Saccharum and Erianthus and revealed the relationships that existed between them. Genetic similarity co-efficient indicated low diversity existing among the S. officinarum clones (82%) and a relatively higher level of diversity in the S. spontaneum clones (69.7%). Higher level of divergence of Erianthus from Saccharum was also clearly estabilished. Five primers produced genus- and species-specific fragments for Erianthus, S. spontaneum, S. officinarum, and S. barberi. The polymorphic primers, when tested on a panel of 30 commercial sugarcane cultivars, revealed a broad range (32.4–83.3%) of pair-wise similarity values, indicating their ability to detect high levels of polymorphism. A combination of two primers could differentiate all the varieties, further emphasizing their potential in fingerprinting and varietal identification.Key words: maize microsatellites, Saccharum, Erianthus, diversity analysis, fingerprinting.

scholarly journals Conversion of sequence-characterized amplified region (SCAR) bands into high-throughput DNA markers based on RAPD technique for detection of the stem nematode Ditylenchus dipsaci in crucial plant hosts

2008 ◽  
Vol 53 (No. 3) ◽  
pp. 97-104 ◽  
Author(s):  
M. Zouhar ◽  
M. Marek ◽  
O. Douda ◽  
J. Mazáková ◽  
P. Ryšánek
Keyword(s):  
Cost Effective ◽  
Healthy Plant ◽  
Host Preferences ◽  
Sequence Characterized Amplified Region ◽  
Detection And Identification ◽  
Plant Hosts ◽  
Cost Effective Technique ◽  
Ditylenchus Dipsaci ◽  
Species Specific ◽  
Template Dna

<i>Ditylenchus dipsaci</i>, the stem nematode, is a migratory endoparasite of over 500 species of angiosperms. The main method of <i>D. dipsaci</i> control is crop rotation, but the presence of morphologically indistinguishable host races with different host preferences makes rotation generally ineffective. Therefore, a sensitive, rapid, reliable, as well as cost effective technique is needed for identification of <i>D. dipsaci</i> in biological samples. This study describes the development of species-specific pairs of PCR oligonucleotides for detection and identification of the <i>D. dipsaci</i> stem nematode in various plant hosts. Designed DIT-2 primer pair specifically amplified a fragment of 325 bp, while DIT-5 primer pair always produced a fragment of 245 bp in all <i>D. dipsaci</i> isolates. Two developed SCAR primer pairs were further tested using template DNA extracted from a collection of twelve healthy plant hosts; no amplification was however observed. The developed PCR protocol has proved to be quite sensitive and able to specifically detect <i>D. dipsaci</i> in artificially infested plant tissues.

Duplex DNA barcoding allows accurate species determination of morphologically similar limpets (Patella spp.) from non-destructive sampling

2016 ◽  
Vol 97 (7) ◽  
pp. 1479-1482 ◽  
Author(s):  
Thomas J. Ashton ◽  
Meriem Kayoueche-Reeve ◽  
Andrew J. Blight ◽  
Jon Moore ◽  
David M. Paterson
Keyword(s):  
Dna Barcoding ◽  
Species Abundance ◽  
Microscopic Analysis ◽  
Cost Effective ◽  
Field Studies ◽  
Similar Species ◽  
Species Determination ◽  
Destructive Sampling ◽  
Species Specific ◽  
Non Destructive

Accurate discrimination of two morphologically similar species of Patella limpets has been facilitated by using qPCR amplification of species-specific mitochondrial genomic regions. Cost-effective and non-destructive sampling is achieved using a mucus swab and simple sample lysis and dilution to create a PCR template. Results show 100% concurrence with dissection and microscopic analysis, and the technique has been employed successfully in field studies. The use of highly sensitive DNA barcoding techniques such as this hold great potential for improving previously challenging field assessments of species abundance.

Effects of Carrier Material and Design on Microalgae Attachment for Biofuel Manufacturing: A Literature Review

2010 ◽  
Author(s):  
Yan Cui ◽  
Wenqiao Wayne Yuan ◽  
Zhijian Pei
Keyword(s):  
Free Energy ◽  
Large Scale ◽  
Cell Attachment ◽  
Cost Effective ◽  
Surface Wettability ◽  
Biofuel Production ◽  
Algae Biofuels ◽  
Attachment Strength ◽  
Species Specific ◽  
Continuous Use

Continuous use of petroleum derived fuels is widely recognized as unsustainable due to depleting supplies and the accumulation of greenhouse gases in the environment. Renewable, carbon neutral transport fuels are needed for environmental and economic sustainabilities. Algae have been demonstrated to be one of the most promising sources for biofuel production. However, large-scale algae production and harvesting for energy manufacturing are too costly using existing methods. The approach of growing algae on solid carriers is innovative and can potentially lead to cost-effective manufacturing of algae biofuels. As cells approach to the solid surface, many factors come in to influence microbial attachment such as the surface wettability, free energy, polarity, roughness and topography. Surface wettability plays an important role in the initial cell attachment. For further contact, surface free energy and polarity are more directly related to cell-substratum attachment strength. Surface roughness and texture are species-specific parameters and have been applied widely in attachment studies.

Real-time modeling of retractable self-launching glider using spreadsheets

2017 ◽  
Vol 89 (6) ◽  
pp. 791-796
Author(s):  
Yasser A. Nogoud ◽  
Attie Jonker ◽  
Shuhaimi Mansor ◽  
A.A.A. Abuelnuor
Keyword(s):  
Control System ◽  
High Performance ◽  
Cost Effective ◽  
Visual Presentation ◽  
Content Type ◽  
Spreadsheet Model ◽  
Time Modeling ◽  
Model Complex ◽  
Effective Development ◽  
And Control

Purpose This paper aims to propose a spreadsheet method for modeling and simulation of a retraction system mechanism for the retractable self-launching system for a high-performance glider. Design/methodology/approach More precisely, the method is based on parametric link design using Excel spreadsheets. Findings This method can be used for kinematic and dynamic analysis, graphical plotting and allows simulation of control kinematics with the ability to make quick and easy parametric changes to a design. It also has the ability to calculate the loads imposed on each component in the control system as a function of input loads and position. Practical implications This paper shows that it is possible to model complex control systems quickly and easily using spreadsheet programs already owned by most small companies. The spreadsheet model is a parametric model, and it gives a simple visual presentation of the control system with interactive movement and control by the user. Originality/value This spreadsheet model in conjunction with a simple CAD program enables the rapid and cost-effective development of control system components.

scholarly journals Green Management System

Media Wisata ◽  
2021 ◽  
Vol 14 (1) ◽  
Author(s):  
Ali Hasan
Keyword(s):  
Natural Resources ◽  
Environmental Protection ◽  
Environmental Sustainability ◽  
Management System ◽  
Cost Effective ◽  
Green Management ◽  
Modern Business ◽  
To Come ◽  
Effective Development ◽  
Management Functions

Green Management System (GMS) is an effort to protect the environment. With the depletion of natural resources, the protection of the environment is not only limited to a small part of its corporate social responsibility, but it must be a model in business organizations. Model GMS-oriented environment, will systematically affect the company in reducing waste, reducing the use of natural resources, reduce pollution and continuously monitoring the purpose of creating business results that were positive for all stakeholders. Modern business travel will continue to come under pressure from the environment and the realization of the company's sustainability strategy, the managers began to review the possibility of implementation of GMS in the management system of the organization; directs the management of the organization, developing technologies to reduce adverse environmental impact and develop the production of green (green production) more rational and cost-effective. Development and implementation of green policies in environmental management become an important part of the transformation of business management functions in optimizing the use of GMS to improve corporate performance and benefits for environmental sustainability. Direct implications for the development and implementation of environmental protection in the modern business organization in accordance with modern green standards and the principles of environmental sustainability and a company associated with the creation of the organization, program and structure, education and training of human resources will enable the transfer and dissemination of knowledge for environmental protection

scholarly journals Genome-wide markers reveal differentiation between and within the cryptic sister species, sunset and vermilion rockfish

2021 ◽  
Author(s):  
Gary C. Longo ◽  
John Harms ◽  
John R. Hyde ◽  
Matthew T. Craig ◽  
Ana Ramón-Laca ◽  
...  
Keyword(s):  
Management Strategies ◽  
Cost Effective ◽  
Sister Species ◽  
Nucleotide Polymorphisms ◽  
Relative Contribution ◽  
Genetic Groups ◽  
Cost Effective Method ◽  
Species Population ◽  
Single Complex ◽  
Species Specific

AbstractThe vermilion rockfish complex, which consists of the cryptic sister species vermilion and sunset rockfish, is one of the most valuable recreational fisheries on the U.S. West Coast. These species are currently managed as a single complex, and because of uncertainty surrounding the relative contribution of each species within existing data sources, the stock status of each species is not fully known. A reliable and cost-effective method is needed to disentangle these species that will allow for the development of abundance indices, life history profiles, and catch histories that may potentially support species-specific stock assessments. Using restriction-site associated DNA sequence (RADseq) markers we generated 10,003 polymorphic loci to characterize the vermilion rockfish complex. PCA and Bayesian clustering approaches based on these loci clearly distinguished between sunset and vermilion rockfishes and identified hybrid individuals. These loci included 203 highly differentiated (FST ≥ 0.99) single nucleotide polymorphisms, which we consider candidates in the planned development of a diagnostic assay capable of distinguishing between these cryptic species. In addition to clearly delineating to species, subsets of the interspecific markers allowed for insight into intraspecific differentiation in both species. Population genetic analyses for sunset rockfish identified two weakly divergent genetic groups with similar levels of genetic diversity. Vermilion rockfish, however, were characterized by three distinct genetic groups with much stronger signals of differentiation and significantly different genetic diversities. Collectively, these data will contribute to well-informed, species-specific management strategies to protect this valuable species complex.

Effect of Mixing Quality on NOx Emissions in Reheat Combustion of GT24 and GT26 Engines

2011 ◽  
Author(s):  
K. Michael Du¨sing ◽  
Andrea Ciani ◽  
Adnan Eroglu
Keyword(s):  
High Pressure ◽  
Development Process ◽  
Flow Characteristic ◽  
Water Channel ◽  
Cost Effective ◽  
Nox Emissions ◽  
Combustion System ◽  
Low Pressure Turbine ◽  
Effective Development ◽  
System 1

Alstoms GT24 and GT26 engines feature a unique sequential combustion system [1, 2]. This system consists of a premixed combustor (called EV), which is followed by a high pressure turbine, a reheat combustor (called SEV) and a low pressure turbine (Figure 1). Recently improvements in NOx performance of the SEV have been demonstrated. Starting with relatively simple methods numerous design variants have been tested and down selected. Further down-selection has been done with methods of increased complexity. Overall a fast and cost effective development process has been assured. During the development process the variation coefficient and unmixedness measured and calculated for mixing only systems (CFD and water channel) has proven to be a reliable indicators for low NOx emissions for the real combustion system on atmospheric and high pressure test rigs. To demonstrate this a comparison of both quantities against NOx emissions is shown. The paper focuses on the NOx results achieved during this development and its relation to mixing quantities. Using this relation, together with a detailed understanding of the flow characteristic in the SEV burner, reductions in NOx emissions for GT24 and GT26 SEV burner and lance hardware can be reached using relatively simple methods.

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