2P008 Parameter dependency of an optimized force field for each amino acid(01A. Protein:Structure,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Yoshitake Sakae; Yuko Okamoto

doi:10.2142/biophys.54.s196_2

2P008 Parameter dependency of an optimized force field for each amino acid(01A. Protein:Structure,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s196_2 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S196

Author(s):

Yoshitake Sakae ◽

Yuko Okamoto

Keyword(s):

Amino Acid ◽

Force Field ◽

Annual Meeting ◽

Biophysical Society ◽

Parameter Dependency

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1PT132 Development of a force field of backbone dihedral angles for each amino acid using Protein Data Bank(The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s91_2 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S91

Author(s):

Yoshitake Sakae ◽

Yuko Okamoto

Keyword(s):

Amino Acid ◽

Force Field ◽

Annual Meeting ◽

Protein Data Bank ◽

Data Bank ◽

Dihedral Angles ◽

Biophysical Society

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2B1400 Improvement of the Single Amino Acid Potential Force Field and the Application to Structure Prediction of Short Peptides(Proteins:Structure & Function II:Theory, Aggregation,Oral Presentation,The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s40_1 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S40

Author(s):

Michio Iwaoka ◽

Kenichi Dedachi ◽

Taku Shimosato ◽

Toshiya Minezaki

Keyword(s):

Amino Acid ◽

Force Field ◽

Annual Meeting ◽

Structure Prediction ◽

Single Amino Acid ◽

Short Peptides ◽

Potential Force ◽

Potential Force Field ◽

Biophysical Society ◽

Acid Potential

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2PT011 Analysis of DNA-binding sites using novel amino acid index for molecular recognition (MR-index)(The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s121_3 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S121

Author(s):

Katsutoshi Hibino ◽

Yasunori Yokoyama ◽

Shigeki Mitaku

Keyword(s):

Amino Acid ◽

Dna Binding ◽

Molecular Recognition ◽

Annual Meeting ◽

Binding Sites ◽

Amino Acid Index ◽

Dna Binding Sites ◽

Biophysical Society ◽

Acid Index

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2PT108 Physical characteristics of amino acid fragments around point mutation with disease susceptibility in apolipoproteins(The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s122_5 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S122-S123

Author(s):

Ryouta Masai ◽

Yasunori Yokoyama ◽

Shigeki Mitaku

Keyword(s):

Amino Acid ◽

Annual Meeting ◽

Point Mutation ◽

Disease Susceptibility ◽

Physical Characteristics ◽

Biophysical Society

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3TA2-03 Amino acid residues responsible for Cl^--dependent shift of absorption maximum in red-sensitive cone pigments(The 47th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.49.s53_3 ◽

2009 ◽

Vol 49 (supplement) ◽

pp. S53

Author(s):

Takahiro Yamashita ◽

Shuhei Nakamura ◽

Kei Tsutsui ◽

Takefumi Morizumi ◽

Yoshinori Shichida

Keyword(s):

Amino Acid ◽

Annual Meeting ◽

Absorption Maximum ◽

Amino Acid Residues ◽

Biophysical Society ◽

Cone Pigments

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3G1124 Development of prediction method for β-sheet formation using amino acid pairing propensity(2)(3G Protein: Structure 3,The 49th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.51.s130_2 ◽

2011 ◽

Vol 51 (supplement) ◽

pp. S130

Author(s):

Hiromi Suzuki

Keyword(s):

Protein Structure ◽

Amino Acid ◽

Annual Meeting ◽

Prediction Method ◽

Biophysical Society ◽

Β Sheet

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2SCP-01 Toward a Computational Assessment of the Effect of Amino Acid Variation to Protein Structure and Function - Case Study on a Few Enzymes(Prediction and analysis of protein functions from structural bioinformatics,Symposium,The 52th Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s132_3 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S132

Author(s):

Yura Kei

Keyword(s):

Protein Structure ◽

Amino Acid ◽

Annual Meeting ◽

Structural Bioinformatics ◽

Structure And Function ◽

Amino Acid Variation ◽

Biophysical Society ◽

Protein Functions ◽

And Function

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1P-268 Interaction of aromatic amino acid residues with retinal in bacteriorhodopsin as disclosed by solid-state NMR(The 46th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.48.s63_5 ◽

2008 ◽

Vol 48 (supplement) ◽

pp. S63

Author(s):

Kana Tajima ◽

Izuru Kawamura ◽

Satoru Tuzi ◽

Akira Naito

Keyword(s):

Amino Acid ◽

Solid State ◽

Annual Meeting ◽

Solid State Nmr ◽

Aromatic Amino Acid ◽

Amino Acid Residues ◽

Biophysical Society

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2E1534 Analysis of amino acid contributions to protein solubility using short peptide tags fused to a simplified BPTI variant(Proteins:Property II,Oral Presentation,The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s46_6 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S46-S47

Author(s):

Yutaka Kuroda ◽

Alam M. Khan ◽

Mohammad M. Islam

Keyword(s):

Amino Acid ◽

Annual Meeting ◽

Oral Presentation ◽

Protein Solubility ◽

Short Peptide ◽

Biophysical Society ◽

Peptide Tags

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1P132 Evaluation of force field parameters for nucleic acid : A case of Z-DNA(Nucleic acid:Structure & Property,The 48th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.50.s42_5 ◽

2010 ◽

Vol 50 (supplement2) ◽

pp. S42

Author(s):

Atsushi Yoshino ◽

Tohru Terada ◽

Kentaro Shimizu

Keyword(s):

Nucleic Acid ◽

Force Field ◽

Annual Meeting ◽

Biophysical Society ◽

Force Field Parameters ◽

Z Dna

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