3B1034 A Novel Method to simulate protein conformational change upon ligand binding(Proteins:Structure & Function III:Dynamics and Circadian Rhythm,Oral Presentation,The 50th Annual Meeting of the Biophysical Society of Japan)

Koichi Tamura; Shigehiko Hayashi

doi:10.2142/biophys.52.s59_1

3B1034 A Novel Method to simulate protein conformational change upon ligand binding(Proteins:Structure & Function III:Dynamics and Circadian Rhythm,Oral Presentation,The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s59_1 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S59

Author(s):

Koichi Tamura ◽

Shigehiko Hayashi

Keyword(s):

Circadian Rhythm ◽

Ligand Binding ◽

Annual Meeting ◽

Conformational Change ◽

Oral Presentation ◽

Protein Conformational Change ◽

Biophysical Society ◽

Novel Method

Download Full-text

3B0936 Mechanical control of light-induced protein conformational change of photoactive yellow protein(Proteins:Structure & Function III:Dynamics and Circadian Rhythm,Oral Presentation,The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s58_2 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S58

Author(s):

Yasushi Imamoto ◽

Take Matsuyama ◽

Yoshinori Shichida

Keyword(s):

Circadian Rhythm ◽

Annual Meeting ◽

Conformational Change ◽

Oral Presentation ◽

Photoactive Yellow Protein ◽

Mechanical Control ◽

Protein Conformational Change ◽

Biophysical Society

Download Full-text

3P-071 Relaxation modes in protein conformational change upon ligand binding(The 46th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.48.s138_3 ◽

2008 ◽

Vol 48 (supplement) ◽

pp. S138

Author(s):

Yusuke Naritomi ◽

Sotaro Fuchigami ◽

Mitsunori Ikeguchi ◽

Akinori Kidera

Keyword(s):

Ligand Binding ◽

Annual Meeting ◽

Conformational Change ◽

Protein Conformational Change ◽

Biophysical Society ◽

Relaxation Modes

Download Full-text

3B1010 Molecular dynamics simulations of dynein motor domain in explicit water(Proteins:Structure & Function III:Dynamics and Circadian Rhythm,Oral Presentation,The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s58_4 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S58

Author(s):

Narutoshi Kamiya ◽

Tadaaki Mashimo ◽

Yu Takano ◽

Takahide Kon ◽

Genji Kurisu ◽

...

Keyword(s):

Molecular Dynamics ◽

Circadian Rhythm ◽

Molecular Dynamics Simulations ◽

Annual Meeting ◽

Oral Presentation ◽

Motor Domain ◽

Dynein Motor ◽

Biophysical Society ◽

Dynamics Simulations ◽

Explicit Water

Download Full-text

3B0912 X-ray structural analysis of HypE and HypF, maturation factors for [NiFe]-hydrogenases(Proteins:Structure & Function III:Dynamics and Circadian Rhythm,Oral Presentation,The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s57_5 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S57-S58

Author(s):

Yasuhito Shomura ◽

Yoshiki Higuchi

Keyword(s):

Circadian Rhythm ◽

Structural Analysis ◽

Annual Meeting ◽

Oral Presentation ◽

X Ray ◽

Biophysical Society

Download Full-text

3B1058 Autodephosphorylation of cyanobacterial circadian clock protein KaiC occurs via formation of ATP as an intermediate(Proteins:Structure & Function III:Dynamics and Circadian Rhythm,Oral Presentation,The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s59_3 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S59

Author(s):

Taeko Ohkawa-Nishiwaki ◽

Takao Kondo

Keyword(s):

Circadian Rhythm ◽

Circadian Clock ◽

Annual Meeting ◽

Oral Presentation ◽

Biophysical Society ◽

Clock Protein

Download Full-text

3B0924 Dynamic structural and antigen binding analyses of antibody single-chain Fvs(Proteins:Structure & Function III:Dynamics and Circadian Rhythm,Oral Presentation,The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s58_1 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S58

Author(s):

Yusuke Tanaka ◽

Hiroshi Sekiguchi ◽

Yuji C. Sasaki ◽

Takachika Azuma ◽

Masayuki Oda

Keyword(s):

Circadian Rhythm ◽

Annual Meeting ◽

Oral Presentation ◽

Antigen Binding ◽

Single Chain ◽

Biophysical Society

Download Full-text

2P-287 Hierarchical description of protein conformational change with motion tree(The 46th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.48.s119_4 ◽

2008 ◽

Vol 48 (supplement) ◽

pp. S119

Author(s):

Ryotaro Koike ◽

Motonori Ota ◽

Akinori Kidera

Keyword(s):

Annual Meeting ◽

Conformational Change ◽

Protein Conformational Change ◽

Biophysical Society

Download Full-text

3B1022 A computational Investigation into the MHC-I Recognition Mechanism of MIR2 from Kaposi's Sarcoma-Associated Herpesvirus(Proteins:Structure & Function III:Dynamics and Circadian Rhythm,Oral Presentation,The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s58_5 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S58-S59

Author(s):

Pai-Chi Li ◽

Naoyuki Miyashita ◽

Satoshi Ishido ◽

Yuji Sugita

Keyword(s):

Circadian Rhythm ◽

Annual Meeting ◽

Oral Presentation ◽

Kaposi's Sarcoma ◽

Kaposi’S Sarcoma ◽

Computational Investigation ◽

Recognition Mechanism ◽

Mhc I ◽

Biophysical Society ◽

Kaposi’S Sarcoma Associated Herpesvirus

Download Full-text

3B1110 Intramolecular feedback regulation of cyanobacterial KaiC ATPase(Proteins:Structure & Function III:Dynamics and Circadian Rhythm,Oral Presentation,The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s59_4 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S59

Author(s):

Atsushi Mukaiyama ◽

Yasuhiro Onoue ◽

Masato Osako ◽

Takao Kondo ◽

Shuji Akiyama

Keyword(s):

Circadian Rhythm ◽

Annual Meeting ◽

Oral Presentation ◽

Feedback Regulation ◽

Biophysical Society

Download Full-text

3B1046 Interactions between cyanobacterial clock proteins KaiA and KaiC revealed by ESR analysis(Proteins:Structure & Function III:Dynamics and Circadian Rhythm,Oral Presentation,The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s59_2 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S59

Author(s):

Kentaro Ishii ◽

Toshiaki Arata ◽

Masahiro Ishiura

Keyword(s):

Circadian Rhythm ◽

Annual Meeting ◽

Oral Presentation ◽

Clock Proteins ◽

Biophysical Society

Download Full-text