1P-098 Replica exchange simulations applied for coarse-grained models of giant protein-nucleic acid complex(Nucleic acid:Interaction & Complex formation, The 47th Annual Meeting of the Biophysical Society of Japan)

Naoto Hori; Hiroo Kenzaki; Shoji Takada

doi:10.2142/biophys.49.s79_2

1P-098 Replica exchange simulations applied for coarse-grained models of giant protein-nucleic acid complex(Nucleic acid:Interaction & Complex formation, The 47th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.49.s79_2 ◽

2009 ◽

Vol 49 (supplement) ◽

pp. S79

Author(s):

Naoto Hori ◽

Hiroo Kenzaki ◽

Shoji Takada

Keyword(s):

Nucleic Acid ◽

Complex Formation ◽

Annual Meeting ◽

Coarse Grained ◽

Replica Exchange ◽

Acid Complex ◽

Biophysical Society ◽

Protein Nucleic Acid

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2P124 Structural sampling of polynucleosome by coarse-grained simulations(05B. Nucleic acid: Interaction & Complex formation,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s215_4 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S215

Author(s):

Hiroo Kenzaki ◽

Shoji Takada

Keyword(s):

Nucleic Acid ◽

Complex Formation ◽

Annual Meeting ◽

Coarse Grained ◽

Acid Interaction ◽

Biophysical Society ◽

Coarse Grained Simulations

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3P128 Metal Cations(2+) Cause the Folding Transition of DNA but Inhibit Spermidine(3+)-Induced Compaction(05B. Nucleic acid: Interaction & Complex formation,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s270_2 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S270

Author(s):

Chika Tongu ◽

Yuko Yoshikawa ◽

Anatoly A Zinchenko ◽

Chen Ning ◽

Takahiro Kenmotsu ◽

...

Keyword(s):

Nucleic Acid ◽

Complex Formation ◽

Annual Meeting ◽

Metal Cations ◽

Acid Interaction ◽

Biophysical Society

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3P121 Analysis of dynamic characteristics of Ars-insulator by coarse-grained models(05A. Nucleic acid: Structure & Property,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s269_1 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S269

Author(s):

Shuhei Isami ◽

Sayuri Tatemoto ◽

Hiraku Nishimori ◽

Naoaki Sakamoto ◽

Akinori Awazu

Keyword(s):

Nucleic Acid ◽

Annual Meeting ◽

Dynamic Characteristics ◽

Coarse Grained ◽

Structure Property ◽

Nucleic Acid Structure ◽

Biophysical Society ◽

Acid Structure

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2P120 Structural dynamics of tri-nucleosome studied by combination of coarse grained molecular simulation and SAXS(05A. Nucleic acid: Structure & Property,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s214_6 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S214

Author(s):

Yusuke Takagi ◽

Yuichi Kokabu ◽

Takashi Oda ◽

Hiroaki Tachiwana ◽

Hiroo Kenzaki ◽

...

Keyword(s):

Nucleic Acid ◽

Annual Meeting ◽

Molecular Simulation ◽

Structural Dynamics ◽

Coarse Grained ◽

Structure Property ◽

Nucleic Acid Structure ◽

Biophysical Society ◽

Acid Structure

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1C1436 Coarse-grained simulations of multi-nucleosome systems(Nucleic acid,The 49th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.51.s34_6 ◽

2011 ◽

Vol 51 (supplement) ◽

pp. S34-S35

Author(s):

Hiroo Kenzaki ◽

Shoji Takada

Keyword(s):

Nucleic Acid ◽

Annual Meeting ◽

Coarse Grained ◽

Biophysical Society ◽

Coarse Grained Simulations

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2P125 Action of tetrazolato-bridged dinuclear platinum(II) complexes with ester moiety on the higher order structure of DNA(05B. Nucleic acid: Interaction & Complex formation,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s215_5 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S215

Author(s):

Yuta Shimizu ◽

Akira Muramatsu ◽

Yuko Yoshikawa ◽

Takahiro Tsuchiya ◽

Hiroki Yoneyama ◽

...

Keyword(s):

Nucleic Acid ◽

Complex Formation ◽

Annual Meeting ◽

Higher Order ◽

Order Structure ◽

Acid Interaction ◽

Dinuclear Platinum ◽

Biophysical Society ◽

Ester Moiety

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2P127 Molecular mechanism for dimerization of the light-regulated bZip module, Photodimeizer(05B. Nucleic acid: Interaction & Complex formation,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s216_1 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S216

Author(s):

Yoichi Nakatani ◽

Osamu Hisatomi

Keyword(s):

Nucleic Acid ◽

Complex Formation ◽

Annual Meeting ◽

Molecular Mechanism ◽

Acid Interaction ◽

Biophysical Society

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2P122 Condensed DNA is unfolded into elongated conformation at ethanol concentration around 80%(05B. Nucleic acid: Interaction & Complex formation,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s215_2 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S215

Author(s):

Yuki Oda ◽

Yuko Yoshikawa ◽

Tadayuki Imanaka ◽

Kenichi Yoshikawa

Keyword(s):

Nucleic Acid ◽

Complex Formation ◽

Annual Meeting ◽

Ethanol Concentration ◽

Acid Interaction ◽

Biophysical Society ◽

Condensed Dna

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3P124 Construction of DNA computing platform using α-hemolysin and DNA/RNA with the enzyme reaction(05B. Nucleic acid: Interaction & Complex formation,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s269_4 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S269

Author(s):

Masayuki Ohara ◽

Masahiro Takinoue ◽

Ryuji Kawano

Keyword(s):

Nucleic Acid ◽

Complex Formation ◽

Annual Meeting ◽

Dna Computing ◽

Enzyme Reaction ◽

Acid Interaction ◽

Computing Platform ◽

Biophysical Society

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1C1624 Monitoring complex formation between quantum dot-based gene carriers and DNAs by using fluorescence cross-correlation spectroscopy(Nucleic acid,The 49th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.51.s36_2 ◽

2011 ◽

Vol 51 (supplement) ◽

pp. S36

Author(s):

Akira Sasaki ◽

Takashi Jin ◽

Masataka Kinjo

Keyword(s):

Nucleic Acid ◽

Complex Formation ◽

Quantum Dot ◽

Annual Meeting ◽

Cross Correlation ◽

Correlation Spectroscopy ◽

Gene Carriers ◽

Biophysical Society

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