1P-092 Detection of a radical species originated from the one-electron oxidation of nucleic-acid bases and the DFT calculation for identification(Nucleic acid:Structure & Property, The 47th Annual Meeting of the Biophysical Society of Japan)

Kouto Migita; Catharina T. Migita; Ryo Miyamoto

doi:10.2142/biophys.49.s78_2

1P-092 Detection of a radical species originated from the one-electron oxidation of nucleic-acid bases and the DFT calculation for identification(Nucleic acid:Structure & Property, The 47th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.49.s78_2 ◽

2009 ◽

Vol 49 (supplement) ◽

pp. S78

Author(s):

Kouto Migita ◽

Catharina T. Migita ◽

Ryo Miyamoto

Keyword(s):

Nucleic Acid ◽

Annual Meeting ◽

Dft Calculation ◽

Nucleic Acid Bases ◽

Radical Species ◽

Biophysical Society ◽

The One

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3B1334 A computational study of the solvated structure of the complex of valyl-tRNA synthetase and the mis-aminoacylated tRNA^(3B Nucleic acid binding proteins,The 49th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.51.s111_1 ◽

2011 ◽

Vol 51 (supplement) ◽

pp. S111

Author(s):

Masaru Tateno ◽

Jiyoung Kang ◽

Munyoung Yang

Keyword(s):

Nucleic Acid ◽

Annual Meeting ◽

Binding Proteins ◽

Computational Study ◽

Trna Synthetase ◽

Nucleic Acid Binding ◽

Biophysical Society ◽

Nucleic Acid Binding Proteins

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3P-092 Analyses of a bHLH transcription factor using site-directed mutants(Nucleic acid binding proteins,The 47th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.49.s166_5 ◽

2009 ◽

Vol 49 (supplement) ◽

pp. S166

Author(s):

Keigo Furuya ◽

Koji Hasegawa ◽

Osamu Hisatomi

Keyword(s):

Transcription Factor ◽

Nucleic Acid ◽

Annual Meeting ◽

Binding Proteins ◽

Bhlh Transcription Factor ◽

Nucleic Acid Binding ◽

Biophysical Society ◽

Nucleic Acid Binding Proteins

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3P128 Metal Cations(2+) Cause the Folding Transition of DNA but Inhibit Spermidine(3+)-Induced Compaction(05B. Nucleic acid: Interaction & Complex formation,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s270_2 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S270

Author(s):

Chika Tongu ◽

Yuko Yoshikawa ◽

Anatoly A Zinchenko ◽

Chen Ning ◽

Takahiro Kenmotsu ◽

...

Keyword(s):

Nucleic Acid ◽

Complex Formation ◽

Annual Meeting ◽

Metal Cations ◽

Acid Interaction ◽

Biophysical Society

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1P119 How transcription factor can bypass obstacles? : Molecular simulation approaches(04. Nucleic acid binding proteins,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s160_5 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S160

Author(s):

Mami Saito ◽

Tsuyoshi Terakawa ◽

Shoji Takada

Keyword(s):

Transcription Factor ◽

Nucleic Acid ◽

Annual Meeting ◽

Molecular Simulation ◽

Binding Proteins ◽

Nucleic Acid Binding ◽

Biophysical Society ◽

Nucleic Acid Binding Proteins

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3P-094 Molecular dynamics simulation of cluster damaged DNA and hOGG1(Nucleic acid binding proteins,The 47th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.49.s167_1 ◽

2009 ◽

Vol 49 (supplement) ◽

pp. S167

Author(s):

Mariko Higuchi ◽

Miroslav Pinak

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Nucleic Acid ◽

Annual Meeting ◽

Binding Proteins ◽

Dynamics Simulation ◽

Nucleic Acid Binding ◽

Biophysical Society ◽

Nucleic Acid Binding Proteins ◽

Damaged Dna

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2P121 DFT calculations on attacking mechanism of radicals to DNA base pair(05A. Nucleic acid: Structure & Property,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s215_1 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S215

Author(s):

Naoko Okutsu ◽

Hideaki Tamai ◽

Eisuke Shimizu ◽

Noriyuki Kurita

Keyword(s):

Nucleic Acid ◽

Dft Calculations ◽

Annual Meeting ◽

Base Pair ◽

Structure Property ◽

Nucleic Acid Structure ◽

Dna Base ◽

Biophysical Society ◽

Dna Base Pair ◽

Acid Structure

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3B1358 Mechanistic analysis of HAC1 mRNA processing with the site-specific endonuclease Ire1p(3B Nucleic acid binding proteins,The 49th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.51.s111_3 ◽

2011 ◽

Vol 51 (supplement) ◽

pp. S111

Author(s):

Ikumi Kawahara ◽

Kaichiro Haruta ◽

Chojiro Kojima ◽

Yoshiyuki Tanaka

Keyword(s):

Nucleic Acid ◽

Annual Meeting ◽

Binding Proteins ◽

Mrna Processing ◽

Nucleic Acid Binding ◽

Site Specific ◽

Mechanistic Analysis ◽

Biophysical Society ◽

Nucleic Acid Binding Proteins

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1P116 Molecular dynamics of transcription factor FMBP-1 proved by paramagnetic relaxation enhancement(04. Nucleic acid binding proteins,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s160_2 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S160

Author(s):

Kosuke Yuhara ◽

Masakatsu Kamiya ◽

Yasuhiro Kumaki ◽

Shigeharu Takiya ◽

Takashi Kikukawa ◽

...

Keyword(s):

Molecular Dynamics ◽

Transcription Factor ◽

Nucleic Acid ◽

Annual Meeting ◽

Binding Proteins ◽

Paramagnetic Relaxation ◽

Paramagnetic Relaxation Enhancement ◽

Nucleic Acid Binding ◽

Biophysical Society ◽

Nucleic Acid Binding Proteins

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1P132 Evaluation of force field parameters for nucleic acid : A case of Z-DNA(Nucleic acid:Structure & Property,The 48th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.50.s42_5 ◽

2010 ◽

Vol 50 (supplement2) ◽

pp. S42

Author(s):

Atsushi Yoshino ◽

Tohru Terada ◽

Kentaro Shimizu

Keyword(s):

Nucleic Acid ◽

Force Field ◽

Annual Meeting ◽

Biophysical Society ◽

Force Field Parameters ◽

Z Dna

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1P121 1D1240 Free energy profile of nucleosomal DNA sliding(Nucleic acid binding proteins,Oral Presentations,The 48th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.50.s40_5 ◽

2010 ◽

Vol 50 (supplement2) ◽

pp. S40

Author(s):

Naoko Kanaeda ◽

Hisashi Ishida ◽

Hidetoshi Kono

Keyword(s):

Free Energy ◽

Nucleic Acid ◽

Annual Meeting ◽

Energy Profile ◽

Nucleic Acid Binding ◽

Free Energy Profile ◽

Nucleosomal Dna ◽

Biophysical Society ◽

Nucleic Acid Binding Proteins ◽

Oral Presentations

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