2P-055 New computational method for protein-ligand binding affinities focused on water entropy(Protein:Property,The 47th Annual Meeting of the Biophysical Society of Japan)

Shuntaro Chiba; Junma Nomura; Yuichi Harano; Masahiro Kinoshita; Minoru Sakurai

doi:10.2142/biophys.49.s115_3

2P-055 New computational method for protein-ligand binding affinities focused on water entropy(Protein:Property,The 47th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.49.s115_3 ◽

2009 ◽

Vol 49 (supplement) ◽

pp. S115

Author(s):

Shuntaro Chiba ◽

Junma Nomura ◽

Yuichi Harano ◽

Masahiro Kinoshita ◽

Minoru Sakurai

Keyword(s):

Ligand Binding ◽

Annual Meeting ◽

Computational Method ◽

Binding Affinities ◽

Biophysical Society

Download Full-text

1E1636 PSCDB : a database for protein structural change upon ligand binding(Genome biology, Bioinformatics,The 49th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.51.s42_1 ◽

2011 ◽

Vol 51 (supplement) ◽

pp. S42

Author(s):

Takayuki Amemiya ◽

Ryotaro Koike ◽

Akinori Kidera ◽

Motonori Ota

Keyword(s):

Structural Change ◽

Ligand Binding ◽

Annual Meeting ◽

Genome Biology ◽

Biophysical Society

Download Full-text

2SG-02 Submillisecond dynamics of protein folding and ligand binding detected by the line conforcal microscopy(2SG New approaches for probing biomolecular fluctuations,The 49th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.51.s19_1 ◽

2011 ◽

Vol 51 (supplement) ◽

pp. S19

Author(s):

Hiroyuki Oikawa ◽

Kiyoto Kamagata ◽

Issei Iijima ◽

Takahiro Hohsaka ◽

Yoshihiro Sambongi ◽

...

Keyword(s):

Protein Folding ◽

Ligand Binding ◽

Annual Meeting ◽

New Approaches ◽

Biophysical Society

Download Full-text

3P-071 Relaxation modes in protein conformational change upon ligand binding(The 46th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.48.s138_3 ◽

2008 ◽

Vol 48 (supplement) ◽

pp. S138

Author(s):

Yusuke Naritomi ◽

Sotaro Fuchigami ◽

Mitsunori Ikeguchi ◽

Akinori Kidera

Keyword(s):

Ligand Binding ◽

Annual Meeting ◽

Conformational Change ◽

Protein Conformational Change ◽

Biophysical Society ◽

Relaxation Modes

Download Full-text

An Efficient Computational Method for Calculating Ligand Binding Affinities

PLoS ONE ◽

10.1371/journal.pone.0042846 ◽

2012 ◽

Vol 7 (8) ◽

pp. e42846 ◽

Cited By ~ 23

Author(s):

Atsushi Suenaga ◽

Noriaki Okimoto ◽

Yoshinori Hirano ◽

Kazuhiko Fukui

Keyword(s):

Ligand Binding ◽

Computational Method ◽

Binding Affinities

Download Full-text

1I1348 A New Way for Understanding Quaternary Structure Changes of Hemoglobin upon Ligand Binding on the Basis of UV-Resonance Raman Spectroscopy(Heme proteins 1,The 49th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.51.s52_2 ◽

2011 ◽

Vol 51 (supplement) ◽

pp. S52

Author(s):

Shigenori Nagatomo ◽

Masako Nagai ◽

Teizo Kitagawa

Keyword(s):

Raman Spectroscopy ◽

Ligand Binding ◽

Annual Meeting ◽

Heme Proteins ◽

Quaternary Structure ◽

Resonance Raman Spectroscopy ◽

Structure Changes ◽

Uv Resonance Raman ◽

Biophysical Society ◽

Uv Resonance Raman Spectroscopy

Download Full-text

2PT133 Coarse-grained MD simulations of ligand binding to proteins : Effect of the conformational changes of the proteins(The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s127_4 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S127

Author(s):

Tatsuki Negami ◽

Tohru Terada ◽

Kentaro Shimizu

Keyword(s):

Ligand Binding ◽

Annual Meeting ◽

Conformational Changes ◽

Md Simulations ◽

Coarse Grained ◽

Biophysical Society

Download Full-text

3P-048 φ-value analysis of induced folding : the role of the ligand binding in induced folding of disordered staphylococcal nuqlease mutant(Protein:Property,The 47th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.49.s159_1 ◽

2009 ◽

Vol 49 (supplement) ◽

pp. S159

Author(s):

Masayoshi Onitsuka ◽

Hironari Kamikubo ◽

Yoichi Yamazaki ◽

Mikio Kataoka

Keyword(s):

Ligand Binding ◽

Annual Meeting ◽

Value Analysis ◽

Induced Folding ◽

Biophysical Society

Download Full-text

1P252 Ligand-binding Kinetics of ErbB Receptors Analyzed by Single-molecule Measurement and Model Simulation(Biol & Artifi memb.:Signal transduction,The 48th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.50.s64_1 ◽

2010 ◽

Vol 50 (supplement2) ◽

pp. S64

Author(s):

Michio Hiroshima ◽

Takashi Nakakuki ◽

Yuko Saeki ◽

Mariko Okada ◽

Yasushi Sako

Keyword(s):

Signal Transduction ◽

Ligand Binding ◽

Annual Meeting ◽

Single Molecule ◽

Model Simulation ◽

Binding Kinetics ◽

Erbb Receptors ◽

Biophysical Society ◽

Kinetics Of

Download Full-text

2P054 Ligand binding process at atomistic resolution revealed by multiscale enhanced sampling(01C. Protein: Property,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s203_6 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S203

Author(s):

Kei Moritsugu ◽

Tohru Terada ◽

Akinori Kidera

Keyword(s):

Ligand Binding ◽

Annual Meeting ◽

Enhanced Sampling ◽

Binding Process ◽

Protein Property ◽

Biophysical Society

Download Full-text

2P344 POCASA : a novel program for prediction of protein-ligand binding site(The 48th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.50.s143_3 ◽

2010 ◽

Vol 50 (supplement2) ◽

pp. S143

Author(s):

Jian Yu ◽

Yong Zhou ◽

Isao Tanaka ◽

Min Yao

Keyword(s):

Ligand Binding ◽

Binding Site ◽

Annual Meeting ◽

Ligand Binding Site ◽

Biophysical Society

Download Full-text