3P-117 Fair current, vortex, and drying/wetting water flow around lysozyme investigated by molecular dynamics simulation(The 46th Annual Meeting of the Biophysical Society of Japan)

Koji Umezawa; Ryota Morikawa; Haruki Nakamura; Junichi Higo

doi:10.2142/biophys.48.s145_5

3P-117 Fair current, vortex, and drying/wetting water flow around lysozyme investigated by molecular dynamics simulation(The 46th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.48.s145_5 ◽

2008 ◽

Vol 48 (supplement) ◽

pp. S145

Author(s):

Koji Umezawa ◽

Ryota Morikawa ◽

Haruki Nakamura ◽

Junichi Higo

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Annual Meeting ◽

Water Flow ◽

Dynamics Simulation ◽

Biophysical Society

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3P243 Analysis of the photoresponse mechanism of the LOV-HTH system using accelerated molecular dynamics simulation(Photobiology: Vision & Photoreception,Poster,The 52th Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s289_3 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S289

Author(s):

Kokubu Tetsuo ◽

Furuta Tadaomi ◽

Sakurai Minoru

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Annual Meeting ◽

Dynamics Simulation ◽

Accelerated Molecular Dynamics ◽

Biophysical Society

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1P204 Structure and orientation of hydrating water molecules at phospholipid/water interface revealed by molecular dynamics simulation(13A. Biological & Artificial membrane: Structure & Property,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s174_6 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S174

Author(s):

Suyong Re ◽

Wataru Nishima ◽

Tahei Tahara ◽

Yuji Sugita

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Annual Meeting ◽

Membrane Structure ◽

Dynamics Simulation ◽

Water Molecules ◽

Water Interface ◽

Structure Property ◽

Artificial Membrane ◽

Biophysical Society

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3M1112 Molecular dynamics simulation for the docking process of myosin against an actin filament(Molecular motor4,The 49th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.51.s151_5 ◽

2011 ◽

Vol 51 (supplement) ◽

pp. S151-S152

Author(s):

Tadashi Masuda

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Annual Meeting ◽

Actin Filament ◽

Dynamics Simulation ◽

Biophysical Society

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2PT134 Molecular dynamics simulation study of Lys48-linked diubiquitin in compact conformation(The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s127_5 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S127

Author(s):

Sotaro Fuchigami ◽

Mitsunori Ikeguchi ◽

Akinori Kidera

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Annual Meeting ◽

Simulation Study ◽

Dynamics Simulation ◽

Biophysical Society ◽

Compact Conformation

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1SK-01 A class library for developing multi-copy, multi-scale molecular dynamics simulation programs(1SK High Performance Computational Approaches to Biological Functions,The 49th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.51.s8_6 ◽

2011 ◽

Vol 51 (supplement) ◽

pp. S8-S9

Author(s):

Tohru Terada ◽

Yasuhiro Matsunaga ◽

Kei Moritsugu ◽

Akinori Kidera

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Annual Meeting ◽

High Performance ◽

Dynamics Simulation ◽

Biological Functions ◽

Computational Approaches ◽

Multi Scale ◽

Class Library ◽

Biophysical Society

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3P-041 Multicanonical molecular dynamics simulation of an all-β protein with secondary structure restraints(Protein:Property,The 47th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.49.s157_6 ◽

2009 ◽

Vol 49 (supplement) ◽

pp. S157-S158

Author(s):

Asahiko Nishimura ◽

Tohru Terada ◽

Kentaro Shimizu

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Secondary Structure ◽

Annual Meeting ◽

Dynamics Simulation ◽

Β Protein ◽

Biophysical Society

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2P152 Molecular dynamics simulation for the neck domain swinging motion of a myosin subfragmnet-1(11. Molecular motor,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s220_2 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S220

Author(s):

Tadashi Masuda

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Annual Meeting ◽

Molecular Motor ◽

Dynamics Simulation ◽

Biophysical Society ◽

Neck Domain

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3P-094 Molecular dynamics simulation of cluster damaged DNA and hOGG1(Nucleic acid binding proteins,The 47th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.49.s167_1 ◽

2009 ◽

Vol 49 (supplement) ◽

pp. S167

Author(s):

Mariko Higuchi ◽

Miroslav Pinak

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Nucleic Acid ◽

Annual Meeting ◽

Binding Proteins ◽

Dynamics Simulation ◽

Nucleic Acid Binding ◽

Biophysical Society ◽

Nucleic Acid Binding Proteins ◽

Damaged Dna

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1PS034 Molecular Dynamics Simulation on Structural Characteristics of Yeast F1-ATPase before and after 16-degree Rotation of Gamma Subunit(The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s80_1 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S80

Author(s):

Yuko Ito ◽

Takashi Yoshidome ◽

Nobuyuki Matsubayashi ◽

Masahiro Kinoshita ◽

Mitsunori Ikeguchi

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Annual Meeting ◽

Structural Characteristics ◽

Dynamics Simulation ◽

Gamma Subunit ◽

F1 Atpase ◽

Biophysical Society ◽

Before And After

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1P-020 Mechanism of Interfacial Activation of a Family I.3 Lipase with Two Lid Structures Revealed by X-ray Crystallography and Molecular Dynamics Simulation(Protein:Structure & Function, The 47th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.49.s66_5 ◽

2009 ◽

Vol 49 (supplement) ◽

pp. S66

Author(s):

Clement Angkawidjaja ◽

Hiroyoshi Matsumura ◽

Yuichi Koga ◽

Kazufumi Takano ◽

Shigenori Kanaya

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Annual Meeting ◽

Dynamics Simulation ◽

X Ray ◽

Interfacial Activation ◽

X Ray Crystallography ◽

Biophysical Society

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