3P-059 An efficient method for calculating free energy landscape of biomolecular systems using fine-grained and coarse-grained models(The 46th Annual Meeting of the Biophysical Society of Japan)

Ryuhei Harada; Akio Kitao

doi:10.2142/biophys.48.s136_4

3P-059 An efficient method for calculating free energy landscape of biomolecular systems using fine-grained and coarse-grained models(The 46th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.48.s136_4 ◽

2008 ◽

Vol 48 (supplement) ◽

pp. S136

Author(s):

Ryuhei Harada ◽

Akio Kitao

Keyword(s):

Free Energy ◽

Annual Meeting ◽

Efficient Method ◽

Energy Landscape ◽

Coarse Grained ◽

Free Energy Landscape ◽

Biomolecular Systems ◽

Fine Grained ◽

Biophysical Society

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2M1648 Free energy landscape analysis of the movement of myosin VI along actin filament using a coarse-grained model(Molecular motor 3,The 48th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.51.s99_2 ◽

2011 ◽

Vol 51 (supplement) ◽

pp. S99

Author(s):

Masahito Ikeo ◽

Masaki Sasai ◽

Takeshi Sasaki ◽

Tomoki Terada

Keyword(s):

Free Energy ◽

Annual Meeting ◽

Actin Filament ◽

Molecular Motor ◽

Energy Landscape ◽

Landscape Analysis ◽

Coarse Grained ◽

Free Energy Landscape ◽

Coarse Grained Model ◽

Biophysical Society

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1PT167 Multidimensional free energy landscape of folding of DHFR(The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s97_4 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S97

Author(s):

Tomoki Terada ◽

Masaki Sasai

Keyword(s):

Free Energy ◽

Annual Meeting ◽

Energy Landscape ◽

Free Energy Landscape ◽

Biophysical Society

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3P-144 Free energy landscape of the interaction between actin and myosin underlying the sliding movement of the myosin head(Molecular motor,The 47th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.49.s175_4 ◽

2009 ◽

Vol 49 (supplement) ◽

pp. S175

Author(s):

Akio Togashi ◽

Takeshi N. Sasaki ◽

Masaki Sasai ◽

Tomoki P. Terada

Keyword(s):

Free Energy ◽

Annual Meeting ◽

Myosin Head ◽

Molecular Motor ◽

Energy Landscape ◽

Free Energy Landscape ◽

Biophysical Society

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1PT141 Temperature-pressure-free energy landscape of ubiquitin(The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s92_5 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S92

Author(s):

Tsubasa Yamamoto ◽

Minoru Kato

Keyword(s):

Free Energy ◽

Annual Meeting ◽

Energy Landscape ◽

Free Energy Landscape ◽

Biophysical Society

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3H0936 Free-energy Landscape for Coupled Folding and Binding of an Intrinsically Disordered Protein by all-atom simulations(3H Protein: Property 4,The 49th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.51.s133_1 ◽

2011 ◽

Vol 51 (supplement) ◽

pp. S133

Author(s):

Junichi Higo ◽

Yoshifumi Nishimura ◽

Haruki Nakamura

Keyword(s):

Free Energy ◽

Annual Meeting ◽

Energy Landscape ◽

Intrinsically Disordered Protein ◽

Free Energy Landscape ◽

Intrinsically Disordered ◽

Disordered Protein ◽

Protein Property ◽

Biophysical Society

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2P-087 Interaction free energy landscape between nucleobase and a water(Nucleic acid:Interaction & Complex formation,The 47th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.49.s119_6 ◽

2009 ◽

Vol 49 (supplement) ◽

pp. S119

Author(s):

Tomoki Yoshida ◽

Misako Aida

Keyword(s):

Free Energy ◽

Complex Formation ◽

Annual Meeting ◽

Energy Landscape ◽

Free Energy Landscape ◽

Biophysical Society ◽

Interaction Free Energy

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3PT008 Free-energy landscape of tRNA translocation through ribosome analysed using MD simulations and cryo-EM density maps(The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s156_5 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S156

Author(s):

Hisashi Ishida ◽

Atsushi Matsumoto

Keyword(s):

Free Energy ◽

Annual Meeting ◽

Energy Landscape ◽

Md Simulations ◽

Free Energy Landscape ◽

Density Maps ◽

Biophysical Society ◽

Trna Translocation

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1P187 Free energy landscape of the interaction between actin and myosin underlying the sliding movement of the myosin head(Molecular motor,The 48th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.50.s52_3 ◽

2010 ◽

Vol 50 (supplement2) ◽

pp. S52

Author(s):

Akio Togashi ◽

Takeshi N. Sasaki ◽

Masaki Sasai ◽

Tomoki P. Terada

Keyword(s):

Free Energy ◽

Annual Meeting ◽

Myosin Head ◽

Molecular Motor ◽

Energy Landscape ◽

Free Energy Landscape ◽

Biophysical Society

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2PS010 Free energy landscape analysis of the actin-myosin VI interaction under the applied force(The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s111_4 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S111

Author(s):

Masahito Ikeo ◽

Masaki Sasai ◽

Tomoki P. Terada

Keyword(s):

Free Energy ◽

Annual Meeting ◽

Energy Landscape ◽

Applied Force ◽

Landscape Analysis ◽

Free Energy Landscape ◽

Myosin Vi ◽

Biophysical Society

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1P049 Free-energy landscape of the C-terminal negative regulatory domain of p53(01C. Protein : Property,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s149_1 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S149

Author(s):

Shinji Iida ◽

Haruki Nakamura ◽

Junichi Higo

Keyword(s):

Free Energy ◽

Annual Meeting ◽

Energy Landscape ◽

Free Energy Landscape ◽

Regulatory Domain ◽

Protein Property ◽

Biophysical Society

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