1P586 Protein conformational change derived from simulated coherent neutron scattering data(27. Molecular dynamics simulation,Poster Session,Abstract,Meeting Program of EABS & BSJ 2006)

Yasumasa Joti; Akio Kitao

doi:10.2142/biophys.46.s293_2

1P586 Protein conformational change derived from simulated coherent neutron scattering data(27. Molecular dynamics simulation,Poster Session,Abstract,Meeting Program of EABS & BSJ 2006)

Seibutsu Butsuri ◽

10.2142/biophys.46.s293_2 ◽

2006 ◽

Vol 46 (supplement2) ◽

pp. S293

Author(s):

Yasumasa Joti ◽

Akio Kitao

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Neutron Scattering ◽

Conformational Change ◽

Poster Session ◽

Dynamics Simulation ◽

Scattering Data ◽

Meeting Program ◽

Protein Conformational Change

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1P589 Coupling between protein conformational change and ligand binding reaction studied by multiple-basin energy landscape model(27. Molecular dynamics simulation,Poster Session,Abstract,Meeting Program of EABS & BSJ 2006)

Seibutsu Butsuri ◽

10.2142/biophys.46.s294_1 ◽

2006 ◽

Vol 46 (supplement2) ◽

pp. S294

Author(s):

Kei-ichi Okazaki ◽

Shoji Takada

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Ligand Binding ◽

Poster Session ◽

Energy Landscape ◽

Dynamics Simulation ◽

Landscape Model ◽

Binding Reaction ◽

Meeting Program ◽

Protein Conformational Change

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1P588 Conformational change of proteins described by extended Go-like models(27. Molecular dynamics simulation,Poster Session,Abstract,Meeting Program of EABS & BSJ 2006)

Seibutsu Butsuri ◽

10.2142/biophys.46.s293_4 ◽

2006 ◽

Vol 46 (supplement2) ◽

pp. S293

Author(s):

Hiroo Kenzaki ◽

Masaki Sasai

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Conformational Change ◽

Poster Session ◽

Dynamics Simulation ◽

Meeting Program

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1P571 A Computational Study of Monoamine Oxidase A Dynamics(27. Molecular dynamics simulation,Poster Session,Abstract,Meeting Program of EABS & BSJ 2006)

Seibutsu Butsuri ◽

10.2142/biophys.46.s289_3 ◽

2006 ◽

Vol 46 (supplement2) ◽

pp. S289

Author(s):

Rossen Apostolov ◽

Yasushige Yonezawa ◽

Haruki Nakamura

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Monoamine Oxidase ◽

Poster Session ◽

Computational Study ◽

Monoamine Oxidase A ◽

Dynamics Simulation ◽

Meeting Program

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1P583 Efficient search of protein low-energy conformational space with a newly devised Wang-Landau molecular dynamics technique(27. Molecular dynamics simulation,Poster Session,Abstract,Meeting Program of EABS & BSJ 2006)

Seibutsu Butsuri ◽

10.2142/biophys.46.s292_3 ◽

2006 ◽

Vol 46 (supplement2) ◽

pp. S292

Author(s):

Takehiro Nagasima ◽

Akira R. Kinjo ◽

Takashi Mitsui ◽

Ken Nishikawa

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Poster Session ◽

Low Energy ◽

Conformational Space ◽

Dynamics Simulation ◽

Efficient Search ◽

Meeting Program

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1P280 Molecular dynamics simulation of F_0 rotary motor : rotational diffusion and proton pathway(9. Molecular motor (I),Poster Session,Abstract,Meeting Program of EABS & BSJ 2006)

Seibutsu Butsuri ◽

10.2142/biophys.46.s216_4 ◽

2006 ◽

Vol 46 (supplement2) ◽

pp. S216

Author(s):

Hisatsugu Yamasaki ◽

Mitsunori Takano

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Poster Session ◽

Molecular Motor ◽

Rotational Diffusion ◽

Dynamics Simulation ◽

Meeting Program ◽

Rotary Motor

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2P406 Molecular Dynamics Simulation on the Glassy States of Trehalose and Neotrehalose(46. Water and bio-molecule,Poster Session,Abstract,Meeting Program of EABS & BSJ 2006)

Seibutsu Butsuri ◽

10.2142/biophys.46.s397_2 ◽

2006 ◽

Vol 46 (supplement2) ◽

pp. S397

Author(s):

Naoko Kawasaki ◽

Takao Furuki ◽

Minoru Sakurai

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Poster Session ◽

Dynamics Simulation ◽

Meeting Program

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1P324 Structural state transitions of G-actin studied by molecular dynamics simulation(10. Cytoskeleton,Poster Session,Abstract,Meeting Program of EABS & BSJ 2006)

Seibutsu Butsuri ◽

10.2142/biophys.46.s227_4 ◽

2006 ◽

Vol 46 (supplement2) ◽

pp. S227

Author(s):

Taira Hayashida ◽

Mitsunori Takano

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Structural State ◽

Poster Session ◽

Dynamics Simulation ◽

State Transitions ◽

Meeting Program

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1P584 Amyloid β-peptides studied by the multicanonical-multioverlap algorithm(27. Molecular dynamics simulation,Poster Session,Abstract,Meeting Program of EABS & BSJ 2006)

Seibutsu Butsuri ◽

10.2142/biophys.46.s292_4 ◽

2006 ◽

Vol 46 (supplement2) ◽

pp. S292

Author(s):

Satoru G. Itoh ◽

Yuko Okamoto

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Poster Session ◽

Amyloid Β ◽

Dynamics Simulation ◽

Meeting Program

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1P585 Explicit Symplectic Molecular Dynamics Simulation for Rigid-Body Molecules in the Canonical Ensemble(27. Molecular dynamics simulation,Poster Session,Abstract,Meeting Program of EABS & BSJ 2006)

Seibutsu Butsuri ◽

10.2142/biophys.46.s293_1 ◽

2006 ◽

Vol 46 (supplement2) ◽

pp. S293

Author(s):

Hisashi Okumura ◽

Satoru G. Itoh ◽

Yuko Okamoto

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Rigid Body ◽

Poster Session ◽

Canonical Ensemble ◽

Dynamics Simulation ◽

Meeting Program

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Coarse-grained molecular dynamics simulation of protein conformational change coupled to ligand binding

Chemical Physics Letters ◽

10.1016/j.cplett.2020.137144 ◽

2020 ◽

Vol 742 ◽

pp. 137144 ◽

Cited By ~ 1

Author(s):

Tatsuki Negami ◽

Kentaro Shimizu ◽

Tohru Terada

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Ligand Binding ◽

Conformational Change ◽

Dynamics Simulation ◽

Coarse Grained ◽

Protein Conformational Change ◽

Coarse Grained Molecular Dynamics

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