1P048 Flexible docking multicanonical molecular dynamics simulations between factor Xa and its inhibitors(1. Protein structure and dynamics (I),Poster Session,Abstract,Meeting Program of EABS & BSJ 2006)

Narutoshi Kamiya; Yasushige Yonezawa; Haruki Nakamura

doi:10.2142/biophys.46.s158_4

1P048 Flexible docking multicanonical molecular dynamics simulations between factor Xa and its inhibitors(1. Protein structure and dynamics (I),Poster Session,Abstract,Meeting Program of EABS & BSJ 2006)

Seibutsu Butsuri ◽

10.2142/biophys.46.s158_4 ◽

2006 ◽

Vol 46 (supplement2) ◽

pp. S158

Author(s):

Narutoshi Kamiya ◽

Yasushige Yonezawa ◽

Haruki Nakamura

Keyword(s):

Molecular Dynamics ◽

Protein Structure ◽

Molecular Dynamics Simulations ◽

Poster Session ◽

Factor Xa ◽

Flexible Docking ◽

Structure And Dynamics ◽

Meeting Program ◽

Dynamics Simulations ◽

Protein Structure And Dynamics

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1P043 Determination of hydrogen-atom positions for endoPG using Molecular Dynamics Simulations(1. Protein structure and dynamics (I),Poster Session,Abstract,Meeting Program of EABS & BSJ 2006)

Seibutsu Butsuri ◽

10.2142/biophys.46.s157_3 ◽

2006 ◽

Vol 46 (supplement2) ◽

pp. S157

Author(s):

Isao Okazaki ◽

Minoru Saito

Keyword(s):

Molecular Dynamics ◽

Protein Structure ◽

Hydrogen Atom ◽

Molecular Dynamics Simulations ◽

Poster Session ◽

Structure And Dynamics ◽

Meeting Program ◽

Dynamics Simulations ◽

Protein Structure And Dynamics

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Faculty Opinions recommendation of Molecular dynamics simulations of the native and partially folded states of ubiquitin: influence of methanol cosolvent, pH, and temperature on the protein structure and dynamics.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.1088149.542736 ◽

2007 ◽

Author(s):

Bernard Montgomery Pettitt

Keyword(s):

Molecular Dynamics ◽

Protein Structure ◽

Molecular Dynamics Simulations ◽

Structure And Dynamics ◽

Dynamics Simulations ◽

Partially Folded States ◽

Protein Structure And Dynamics

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Faculty Opinions recommendation of Molecular dynamics simulations of the native and partially folded states of ubiquitin: influence of methanol cosolvent, pH, and temperature on the protein structure and dynamics.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.1088149.541146 ◽

2007 ◽

Author(s):

Richard Henchman

Keyword(s):

Molecular Dynamics ◽

Protein Structure ◽

Molecular Dynamics Simulations ◽

Structure And Dynamics ◽

Dynamics Simulations ◽

Partially Folded States ◽

Protein Structure And Dynamics

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1P044 Ligand-dissociation increases protein flexibility in trp RNA-binding attenuation protein (TRAP) : Molecular dynamics simulation study(1. Protein structure and dynamics (I),Poster Session,Abstract,Meeting Program of EABS & BSJ 2006)

Seibutsu Butsuri ◽

10.2142/biophys.46.s157_4 ◽

2006 ◽

Vol 46 (supplement2) ◽

pp. S157

Author(s):

Hidemi Araki ◽

Sotaro Fuchigami ◽

Mitsunori Ikeguchi ◽

Jonathan G. Heddle ◽

Jeremy R. H. Tame ◽

...

Keyword(s):

Molecular Dynamics ◽

Protein Structure ◽

Molecular Dynamics Simulation ◽

Poster Session ◽

Rna Binding ◽

Dynamics Simulation ◽

Ligand Dissociation ◽

Structure And Dynamics ◽

Meeting Program ◽

Protein Structure And Dynamics

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Insights On Protein Structure And Dynamics From Multiple Biased Molecular Dynamics Simulations

Biophysical Journal ◽

10.1016/j.bpj.2008.12.3085 ◽

2009 ◽

Vol 96 (3) ◽

pp. 589a

Author(s):

Fabrizio Marinelli ◽

Stefano Piana ◽

Fabio Pietrucci ◽

Nevena Torodova ◽

Irene Yarovsky ◽

...

Keyword(s):

Molecular Dynamics ◽

Protein Structure ◽

Molecular Dynamics Simulations ◽

Structure And Dynamics ◽

Dynamics Simulations ◽

Protein Structure And Dynamics

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Molecular dynamics simulations of the native and partially folded states of ubiquitin: Influence of methanol cosolvent, pH, and temperature on the protein structure and dynamics

Protein Science ◽

10.1110/ps.062323407 ◽

2007 ◽

Vol 16 (6) ◽

pp. 1101-1118 ◽

Cited By ~ 35

Author(s):

David B. Kony ◽

Philippe H. Hünenberger ◽

Wilfred F. van Gunsteren

Keyword(s):

Molecular Dynamics ◽

Protein Structure ◽

Molecular Dynamics Simulations ◽

Structure And Dynamics ◽

Dynamics Simulations ◽

Partially Folded States ◽

Protein Structure And Dynamics

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1P047 Analysis of the dynamics of RuvA-RuvB-Holliday junction DNA complex studied by molecular dynamics simulation(1. Protein structure and dynamics (I),Poster Session,Abstract,Meeting Program of EABS & BSJ 2006)

Seibutsu Butsuri ◽

10.2142/biophys.46.s158_3 ◽

2006 ◽

Vol 46 (supplement2) ◽

pp. S158

Author(s):

Hisashi Ishida ◽

Nobuhiro Go

Keyword(s):

Molecular Dynamics ◽

Protein Structure ◽

Molecular Dynamics Simulation ◽

Poster Session ◽

Dynamics Simulation ◽

Holliday Junction ◽

Structure And Dynamics ◽

Meeting Program ◽

Dna Complex ◽

Protein Structure And Dynamics

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1P004 Structure and Dynamics of two Calcium Binding Proteins from Entamoeba histolytica by NMR(1. Protein structure and dynamics (I),Poster Session,Abstract,Meeting Program of EABS & BSJ 2006)

Seibutsu Butsuri ◽

10.2142/biophys.46.s147_4 ◽

2006 ◽

Vol 46 (supplement2) ◽

pp. S147

Author(s):

Sourajit M. Mustafi ◽

Ritu B. Mutalik ◽

Sulakshna MUkherji ◽

Kandala V.R. Chary

Keyword(s):

Protein Structure ◽

Entamoeba Histolytica ◽

Calcium Binding ◽

Binding Proteins ◽

Poster Session ◽

Calcium Binding Proteins ◽

Structure And Dynamics ◽

Meeting Program ◽

Protein Structure And Dynamics

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2P041 X-ray crystal structural analysis of vault from rat liver(29. Protein structure and dynamics (II),Poster Session,Abstract,Meeting Program of EABS & BSJ 2006)

Seibutsu Butsuri ◽

10.2142/biophys.46.s306_1 ◽

2006 ◽

Vol 46 (supplement2) ◽

pp. S306

Author(s):

Hideaki TANAKA ◽

Koji KATO ◽

Eiki Yamashita ◽

Chizuko FUJITA ◽

Tomoyuki SUMIZAWA ◽

...

Keyword(s):

Protein Structure ◽

Structural Analysis ◽

Rat Liver ◽

Poster Session ◽

X Ray ◽

Structure And Dynamics ◽

Meeting Program ◽

Crystal Structural ◽

Protein Structure And Dynamics

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1P041 Structural alignment with Delaunay codes characterizing local structures and structural motifs identified by the alignment(1. Protein structure and dynamics (I),Poster Session,Abstract,Meeting Program of EABS & BSJ 2006)

Seibutsu Butsuri ◽

10.2142/biophys.46.s157_1 ◽

2006 ◽

Vol 46 (supplement2) ◽

pp. S157

Author(s):

Shohei Tamura ◽

Yaemi Teramoto ◽

Jiro Katto ◽

Hiroshi Wako

Keyword(s):

Protein Structure ◽

Poster Session ◽

Structural Alignment ◽

Structural Motifs ◽

Local Structures ◽

Structure And Dynamics ◽

Meeting Program ◽

Protein Structure And Dynamics

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