Bayesian Nonparametric Bootstrap Confidence Intervals

1985 ◽  
Author(s):  
Nils L. Hjort
Keyword(s):  
Confidence Intervals ◽  
Bayesian Nonparametric ◽  
Nonparametric Bootstrap ◽  
Bootstrap Confidence Intervals

Two-Condition Within-Participant Statistical Mediation Analysis: A Path-Analytic Framework

2019 ◽  
Author(s):  
Amanda Kay Montoya ◽  
Andrew F. Hayes
Keyword(s):  
Confidence Intervals ◽  
Indirect Effect ◽  
Mediation Analysis ◽  
Analytic Approach ◽  
Analytic Framework ◽  
Hypothesis Tests ◽  
Bootstrap Confidence Intervals ◽  
Complex Models ◽  
Path Analytic ◽  
Statistical Mediation Analysis

Researchers interested in testing mediation often use designs where participants are measured on a dependent variable Y and a mediator M in both of two different circumstances. The dominant approach to assessing mediation in such a design, proposed by Judd, Kenny, and McClelland (2001), relies on a series of hypothesis tests about components of the mediation model and is not based on an estimate of or formal inference about the indirect effect. In this paper we recast Judd et al.’s approach in the path-analytic framework that is now commonly used in between-participant mediation analysis. By so doing, it is apparent how to estimate the indirect effect of a within-participant manipulation on some outcome through a mediator as the product of paths of influence. This path analytic approach eliminates the need for discrete hypothesis tests about components of the model to support a claim of mediation, as Judd et al’s method requires, because it relies only on an inference about the product of paths— the indirect effect. We generalize methods of inference for the indirect effect widely used in between-participant designs to this within-participant version of mediation analysis, including bootstrap confidence intervals and Monte Carlo confidence intervals. Using this path analytic approach, we extend the method to models with multiple mediators operating in parallel and serially and discuss the comparison of indirect effects in these more complex models. We offer macros and code for SPSS, SAS, and Mplus that conduct these analyses.

Empirical Nonparametric Bootstrap Strategies in Quantitative Trait Loci Mapping: Conditioning on the Genetic Model

Genetics ◽  
1998 ◽  
Vol 148 (1) ◽  
pp. 525-535
Author(s):  
Claude M Lebreton ◽  
Peter M Visscher
Keyword(s):  
Quantitative Trait Loci ◽  
Confidence Interval ◽  
Confidence Intervals ◽  
Quantitative Trait ◽  
Genetic Factors ◽  
Genetic Model ◽  
Original Data ◽  
Nonparametric Bootstrap ◽  
Test Protocol ◽  
Trait Loci

AbstractSeveral nonparametric bootstrap methods are tested to obtain better confidence intervals for the quantitative trait loci (QTL) positions, i.e., with minimal width and unbiased coverage probability. Two selective resampling schemes are proposed as a means of conditioning the bootstrap on the number of genetic factors in our model inferred from the original data. The selection is based on criteria related to the estimated number of genetic factors, and only the retained bootstrapped samples will contribute a value to the empirically estimated distribution of the QTL position estimate. These schemes are compared with a nonselective scheme across a range of simple configurations of one QTL on a one-chromosome genome. In particular, the effect of the chromosome length and the relative position of the QTL are examined for a given experimental power, which determines the confidence interval size. With the test protocol used, it appears that the selective resampling schemes are either unbiased or least biased when the QTL is situated near the middle of the chromosome. When the QTL is closer to one end, the likelihood curve of its position along the chromosome becomes truncated, and the nonselective scheme then performs better inasmuch as the percentage of estimated confidence intervals that actually contain the real QTL's position is closer to expectation. The nonselective method, however, produces larger confidence intervals. Hence, we advocate use of the selective methods, regardless of the QTL position along the chromosome (to reduce confidence interval sizes), but we leave the problem open as to how the method should be altered to take into account the bias of the original estimate of the QTL's position.

scholarly journals Nonparametric bootstrap inference for the targeted highly adaptive least absolute shrinkage and selection operator (LASSO) estimator

2020 ◽  
Vol 0 (0) ◽  
Author(s):  
Weixin Cai ◽  
Mark van der Laan
Keyword(s):  
Confidence Intervals ◽  
Nonparametric Estimation ◽  
Cross Validation ◽  
Data Distribution ◽  
Average Treatment Effect ◽  
Finite Sample ◽  
Nonparametric Bootstrap ◽  
A Value ◽  
Variation Norm ◽  
Selection Operator

AbstractThe Highly-Adaptive least absolute shrinkage and selection operator (LASSO) Targeted Minimum Loss Estimator (HAL-TMLE) is an efficient plug-in estimator of a pathwise differentiable parameter in a statistical model that at minimal (and possibly only) assumes that the sectional variation norm of the true nuisance functions (i.e., relevant part of data distribution) are finite. It relies on an initial estimator (HAL-MLE) of the nuisance functions by minimizing the empirical risk over the parameter space under the constraint that the sectional variation norm of the candidate functions are bounded by a constant, where this constant can be selected with cross-validation. In this article we establish that the nonparametric bootstrap for the HAL-TMLE, fixing the value of the sectional variation norm at a value larger or equal than the cross-validation selector, provides a consistent method for estimating the normal limit distribution of the HAL-TMLE. In order to optimize the finite sample coverage of the nonparametric bootstrap confidence intervals, we propose a selection method for this sectional variation norm that is based on running the nonparametric bootstrap for all values of the sectional variation norm larger than the one selected by cross-validation, and subsequently determining a value at which the width of the resulting confidence intervals reaches a plateau. We demonstrate our method for 1) nonparametric estimation of the average treatment effect when observing a covariate vector, binary treatment, and outcome, and for 2) nonparametric estimation of the integral of the square of the multivariate density of the data distribution. In addition, we also present simulation results for these two examples demonstrating the excellent finite sample coverage of bootstrap-based confidence intervals.

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