sierra-local: A lightweight standalone application for drug resistance prediction

Jasper Ho; Garway Ng; Mathias Renaud; Art Poon

doi:10.21105/joss.01186

sierra-local: A lightweight standalone application for drug resistance prediction

The Journal of Open Source Software ◽

10.21105/joss.01186 ◽

2019 ◽

Vol 4 (33) ◽

pp. 1186

Author(s):

Jasper Ho ◽

Garway Ng ◽

Mathias Renaud ◽

Art Poon

Keyword(s):

Drug Resistance ◽

Drug Resistance Prediction ◽

Resistance Prediction

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Antimicrobial Drug Resistance: "Prediction Is Very Difficult, Especially about the Future"1

Emerging Infectious Diseases ◽

10.3201/eid1110.051014 ◽

2005 ◽

Vol 11 (10) ◽

pp. 1503-1506 ◽

Cited By ~ 41

Author(s):

Patrice Courvalin

Keyword(s):

Drug Resistance ◽

Antimicrobial Drug ◽

Antimicrobial Drug Resistance ◽

The Future ◽

Drug Resistance Prediction ◽

Resistance Prediction

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Role of Bioinformatics in Drug Resistance Prediction for HIV/AIDS

Current trends in Bioinformatics: An Insight ◽

10.1007/978-981-10-7483-7_16 ◽

2018 ◽

pp. 277-286

Author(s):

Jayakanthan Mannu ◽

Premendu P. Mathur

Keyword(s):

Drug Resistance ◽

Drug Resistance Prediction ◽

Resistance Prediction ◽

Hiv Aids

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HIV Drug Resistance Prediction with Categorical Kernel Functions

Bioinformatics and Biomedical Engineering - Lecture Notes in Computer Science ◽

10.1007/978-3-030-17935-9_22 ◽

2019 ◽

pp. 233-244

Author(s):

Elies Ramon ◽

Miguel Pérez-Enciso ◽

Lluís Belanche-Muñoz

Keyword(s):

Drug Resistance ◽

Kernel Functions ◽

Hiv Drug Resistance ◽

Drug Resistance Prediction ◽

Resistance Prediction

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Molecular Drug Resistance Prediction for Acetohydroxyacid Synthase Mutants Against Chlorsulfuron Using MB-QSAR

Chinese Journal of Chemistry ◽

10.1002/cjoc.201300417 ◽

2013 ◽

Vol 31 (9) ◽

pp. 1171-1180 ◽

Cited By ~ 5

Author(s):

Yinwu He ◽

Congwei Niu ◽

Xin Wen ◽

Zhen Xi

Keyword(s):

Drug Resistance ◽

Acetohydroxyacid Synthase ◽

Drug Resistance Prediction ◽

Resistance Prediction

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Exploiting HIV-1 protease and reverse transcriptase cross-resistance information for improved drug resistance prediction by means of multi-label classification

BioData Mining ◽

10.1186/s13040-016-0089-1 ◽

2016 ◽

Vol 9 (1) ◽

Cited By ~ 17

Author(s):

Mona Riemenschneider ◽

Robin Senge ◽

Ursula Neumann ◽

Eyke Hüllermeier ◽

Dominik Heider

Keyword(s):

Drug Resistance ◽

Reverse Transcriptase ◽

Cross Resistance ◽

Drug Resistance Prediction ◽

Resistance Prediction ◽

Hiv 1

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Combining Classifiers for HIV-1 Drug Resistance Prediction

Protein and Peptide Letters ◽

10.2174/092986608784567537 ◽

2008 ◽

Vol 15 (5) ◽

pp. 435-442 ◽

Cited By ~ 3

Author(s):

Anantaporn Srisawat ◽

Boonserm Kijsirikul

Keyword(s):

Drug Resistance ◽

Combining Classifiers ◽

Drug Resistance Prediction ◽

Resistance Prediction ◽

Hiv 1

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Co-expression of pregnane X receptor and ATP-binding cassette sub-family B member 1 in peripheral blood: A prospective indicator for drug resistance prediction in non-small cell lung cancer

Oncology Letters ◽

10.3892/ol.2016.4369 ◽

2016 ◽

Vol 11 (5) ◽

pp. 3033-3039 ◽

Cited By ~ 8

Author(s):

QINGNUAN KONG ◽

ZENGLEI HAN ◽

XIAOLI ZUO ◽

HONGJUN WEI ◽

WEIQING HUANG

Keyword(s):

Lung Cancer ◽

Drug Resistance ◽

Small Cell Lung Cancer ◽

Cell Lung Cancer ◽

Peripheral Blood ◽

Pregnane X Receptor ◽

Small Cell ◽

Small Cell Lung ◽

Drug Resistance Prediction ◽

Resistance Prediction

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Comment on “Application of PK/PD Modeling in Veterinary Field: Dose Optimization and Drug Resistance Prediction”

BioMed Research International ◽

10.1155/2017/7698452 ◽

2017 ◽

Vol 2017 ◽

pp. 1-2 ◽

Cited By ~ 1

Author(s):

Anna Benini ◽

Guido Francesco Fumagalli

Keyword(s):

Drug Resistance ◽

Dose Optimization ◽

Drug Resistance Prediction ◽

Resistance Prediction

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Algorithm evolution for drug resistance prediction: comparison of systems for HIV-1 genotyping

Antiviral Therapy ◽

10.3851/imp2947 ◽

2015 ◽

Vol 20 (6) ◽

pp. 661-665 ◽

Cited By ~ 6

Author(s):

Sarah Wagner ◽

◽

Mario Kurz ◽

Thomas Klimkait

Keyword(s):

Drug Resistance ◽

Drug Resistance Prediction ◽

Resistance Prediction ◽

Hiv 1

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Prevalence of Hepatitis B Virus Infection Among Voluntary Blood Donors from the Northeastern Region of Iran: Genotyping, Viral Load Characterization and Drug Resistance Prediction

Clinical Laboratory ◽

10.7754/clin.lab.2020.200510 ◽

2021 ◽

Vol 67 (01/2021) ◽

Author(s):

Sadegh Abbasian ◽

Zohreh Sharifi ◽

Mahtab Maghsudlu

Keyword(s):

Drug Resistance ◽

Viral Load ◽

Hepatitis B Virus ◽

Virus Infection ◽

Hepatitis B ◽

Blood Donors ◽

Hepatitis B Virus Infection ◽

B Virus ◽

Drug Resistance Prediction ◽

Resistance Prediction

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