Response of the green June beetle and its gut microbiome to RDX and phenanthrene

2020 ◽  
Author(s):  
Carina Jung ◽  
Matthew Carr ◽  
Eric Fleischman ◽  
Chandler Roesch

Green June beetles are a cosmopolitan pest in the United States. Adults are voracious consumers of tree and vine fruit, while their larvae can dam-age and inadvertently consume root systems, particularly those of grasses, as they move through the soil and forage for detritus. Larvae ingest and process large volumes of soil while in the process of feeding. Due to their intimate contact with the soil it was hypothesized that soil contaminants that are known animal toxins would perturb the larval and affect their overall health and survival. Studies of this kind are important contribu-tions to the development of new model organisms and our understanding of interactions between the environment, contaminants, gut microbiome, and animal development, health, and survival. It is important to continue to develop relevant model organisms for monitoring toxicity as regulations for working with vertebrates becomes more prohibitive. In this study green June beetle larvae were exposed to RDX and phenanthrene through-out their entire soil-bound development, starting within the first few days of hatching through to their emergence as adults. The overall findings included that even at high concentrations, RDX and phenanthrene (25 ppm) exerted no significant effect on body weight or survival. Also, there was lit-tle apparent effect of RDX and phenanthrene on the bacterial microbiome, and no statistical association with measurable health effects. Nevertheless, the green June beetle is an interesting model for soil toxicity experiments in the future as is it easy to collect, house, and handle.

Toxins ◽  
2021 ◽  
Vol 13 (5) ◽  
pp. 294
Author(s):  
Yan Zhu ◽  
Pascal Drouin ◽  
Dion Lepp ◽  
Xiu-Zhen Li ◽  
Honghui Zhu ◽  
...  

Zearalenone (ZEA) is a mycotoxin widely occurring in many agricultural commodities. In this study, a purified bacterial isolate, Bacillus sp. S62-W, obtained from one of 104 corn silage samples from various silos located in the United States, exhibited activity to transform the mycotoxin ZEA. A novel microbial transformation product, ZEA-14-phosphate, was detected, purified, and identified by HPLC, LC-MS, and NMR analyses. The isolate has been identified as belonging to the genus Bacillus according to phylogenetic analysis of the 16S rRNA gene and whole genome alignments. The isolate showed high efficacy in transforming ZEA to ZEA-14-phosphate (100% transformation within 24 h) and possessed advantages of acid tolerance (work at pH = 4.0), working under a broad range of temperatures (22–42 °C), and a capability of transforming ZEA at high concentrations (up to 200 µg/mL). In addition, 23 Bacillus strains of various species were tested for their ZEA phosphorylation activity. Thirteen of the Bacillus strains showed phosphorylation functionality at an efficacy of between 20.3% and 99.4% after 24 h incubation, suggesting the metabolism pathway is widely conserved in Bacillus spp. This study established a new transformation system for potential application of controlling ZEA although the metabolism and toxicity of ZEA-14-phosphate requires further investigation.


2021 ◽  
Vol 53 (1) ◽  
pp. 3-19
Author(s):  
Robert Lücking

AbstractPeter D. Crittenden served as senior editor of The Lichenologist, the flagship journal in the field of lichenological research, for a period of two decades, between 2000 and 2019. A review of the development of the journal and the publication output during this period is provided. The number of papers published during this period (1197) matches that of all papers published under the three previous senior editors, Peter W. James, David L. Hawksworth and Dennis H. Brown, during a much longer period of 42 years from 1958 to 1999. Peter oversaw important editorial changes to the layout and content of the journal: an increased size with a modern cover design, leaving behind the classic mint-coloured cover of more than 40 years; the addition of ‘thematic issues’ and encouragement of large monographs; implementation of substantial changes to the Code, such as effective electronic publication and obligate registration of new fungal names; and more recently a new policy to reject so-called ‘single naked species descriptions’. Shortly before Peter took over as senior editor, The Lichenologist had received its first impact factor, and Peter managed to continuously increase this measure from around 0.9 to lately up to over 1.5, higher than most other competing journals. The 1197 papers between 2000 and 2019 were published by a total of 1138 different authors, more than half of whom appeared just once as author, whereas a small number participated in numerous (up to 93) papers. There was a continuous increase in the mean number of authors per paper per year, from below 2.5 to around 3.5, the highest numbers ranging between 11 and 30; still, c. 75% of all papers between 2000 and 2019 were single-authored or had up to three authors. Based on affiliations at the time of publication, two thirds of author contributions came from Europe (66%), 13% from North America, 9% from Asia and 7% from Latin America. Likewise, almost half of the study areas were located in Europe and around 10% each in North America, South America and Asia. The countries with the highest number of studies included, in descending order, the United States, Spain, the United Kingdom, Norway and Sweden. North America and Europe were over-represented in terms of author contributions, whereas Africa, Latin America, Australia and Oceania were over-represented in terms of study areas. The 1197 papers analyzed encompassed a broad diversity of topics, classified into 32 categories. Taxonomy of lichenized fungi was the most frequent component, representing the focal point in almost half of all studies, followed by phylogeny and evolution, ecology, and the taxonomy of lichenicolous fungi. Around two thirds of the currently accepted genera of lichenized fungi were treated, with a significant correlation between known species richness and the number of papers in which a genus was treated, underlining the taxonomic representativity of papers published in the journal during the past two decades. Examples of genera that were treated more frequently than expected included commonly studied model organisms, such as Lobaria, and those frequently featured in ecological or other non-taxonomic studies, such as Xanthoria. Species-rich tropical genera, particularly in the Graphidaceae, were generally under-represented. Mean number of authors per paper per volume and total number of country origins of authors per volume were the best predictors of impact factor, followed by diversity of study countries per volume, mean number of study countries per paper per volume, mean number of topics per paper per volume, and proportion of studies with phylogenetic components per volume. Individual papers that contributed to high impact factors included broad-scale revisionary treatments and worldwide keys to species-rich taxa, substantial phylogenetic reclassifications of known taxonomic groups, papers dealing with novel methodological approaches of broad interest, and broad-scale studies related to environmental change and lichen biomonitoring.


2011 ◽  
Vol 11 (16) ◽  
pp. 8809-8823 ◽  
Author(s):  
N. Hiranuma ◽  
S. D. Brooks ◽  
J. Gramann ◽  
B. W. Auvermann

Abstract. Housing roughly 10 million head of cattle in the United States alone, open air cattle feedlots represent a significant but poorly constrained source of atmospheric particles. Here we present a comprehensive characterization of physical and chemical properties of particles emitted from a large representative cattle feedlot in the Southwest United States. In the summer of 2008, measurements and samplings were conducted at the upwind and downwind edges of the facility. A series of far-field measurements and samplings was also conducted 3.5 km north of the facility. Two instruments, a GRIMM Sequential Mobility Particle Sizer (SMPS) and a GRIMM Portable Aerosol Spectrometer (PAS), were used to measure particle size distributions over the range of 0.01 to 25 μm diameter. Raman microspectroscopy was used to determine the chemical composition of particles on a single particle basis. Volume size distributions of dust were dominated by coarse mode particles. Twenty-four hour averaged concentrations of PM10 (particulate matter with a diameter of 10 μm or less) were as high as 1200 μg m−3 during the campaign. The primary constituents of the particulate matter were carbonaceous materials, such as humic acid, water soluble organics, and less soluble fatty acids, including stearic acid and tristearin. A significant fraction of the organic particles was present in internal mixtures with salts. Basic characteristics such as size distribution and composition of agricultural aerosols were found to be different than the properties of those found in urban and semi-urban aerosols. Failing to account for such differences may lead to errors in estimates of aerosol effects on local air quality, visibility, and public health.


Metabolites ◽  
2021 ◽  
Vol 12 (1) ◽  
pp. 10
Author(s):  
Yao Lu ◽  
Jasmine Chong ◽  
Shiqian Shen ◽  
Joey-Bahige Chammas ◽  
Lorraine Chalifour ◽  
...  

Crosstalk between the gut microbiome and the host plays an important role in animal development and health. Small compounds are key mediators in this host–gut microbiome dialogue. For instance, tryptophan metabolites, generated by biotransformation of tryptophan through complex host–microbiome co-metabolism can trigger immune, metabolic, and neuronal effects at local and distant sites. However, the origin of tryptophan metabolites and the underlying tryptophan metabolic pathway(s) are not well characterized in the current literature. A large number of the microbial contributors of tryptophan metabolism remain unknown, and there is a growing interest in predicting tryptophan metabolites for a given microbiome. Here, we introduce TrpNet, a comprehensive database and analytics platform dedicated to tryptophan metabolism within the context of host (human and mouse) and gut microbiome interactions. TrpNet contains data on tryptophan metabolism involving 130 reactions, 108 metabolites and 91 enzymes across 1246 human gut bacterial species and 88 mouse gut bacterial species. Users can browse, search, and highlight the tryptophan metabolic pathway, as well as predict tryptophan metabolites on the basis of a given taxonomy profile using a Bayesian logistic regression model. We validated our approach using two gut microbiome metabolomics studies and demonstrated that TrpNet was able to better predict alterations in in indole derivatives compared to other established methods.


2021 ◽  
Author(s):  
Tomer Stern ◽  
Sebastian J Streichan ◽  
Stanislav Y Shvartsman ◽  
Eric F Wieschaus

Gastrulation movements in all animal embryos start with regulated deformations of patterned epithelial sheets. Current studies of gastrulation use a wide range of model organisms and emphasize either large-scale tissue processes or dynamics of individual cells and cell groups. Here we take a step towards bridging these complementary strategies and deconstruct early stages of gastrulation in the entire Drosophila embryo, where transcriptional patterns in the blastoderm give rise to region-specific cell behaviors. Our approach relies on an integrated computational framework for cell segmentation and tracking and on efficient algorithms for event detection. Our results reveal how thousands of cell shape changes, divisions, and intercalations drive large-scale deformations of the patterned blastoderm, setting the stage for systems-level dissection of a pivotal step in animal development.


2020 ◽  
Author(s):  
Ben Orsburn

AbstractThe production of hemp and products derived from these plants that contain zero to trace amounts of the psychoactive cannabinoid tetrahydrocannabidiol (THC) is a rapidly growing new market in the United States. The most common products today contain relatively high concentrations of the compound cannabidiol (CBD). Recent studies have investigated commercial CBD products using targeted assays and have found varying degrees of misrepresentation and contamination of these products. To expand on previous studies, we demonstrate the application of non-targeted screening by high resolution accurate mass spectrometry to more comprehensively identify potential adulterants and contaminants. We find evidence to support previous conclusions that CBD products are commonly misrepresented in terms of cannabinoid concentrations present. Specifically, we observe a wide variation in relative THC concentrations across the product tested, with some products containing 10-fold more relative signal than others. In addition, we find that several products appear to be purposely adulterated with over the counter drugs such as caffeine and melatonin. We also observe multiple small molecule contaminants that are typically linked to improper production or packaging methods in food or pharmaceutical production. Finally, we present high resolution accurate mass spectrometry data and tandem MS/MS fragments supporting the presence of trace amounts of fluorofentanyl in a single mail order CBD product. We conclude that the CBD industry would benefit from more robust testing regulations and that the cannabis testing industry, in general, would benefit from the use of non-targeted screening technologies.


2020 ◽  
Author(s):  
Rebecca M. Lebeaux ◽  
Modupe O. Coker ◽  
Erika F. Dade ◽  
Thomas J. Palys ◽  
Hilary G. Morrison ◽  
...  

Abstract Background: Antibiotic resistance is an increasing threat to human health. The human gut microbiome harbors a collection of bacterial antimicrobial resistance genes (ARGs) known as the resistome. The factors associated with establishment of the resistome in early life are not well understood and clarifying these factors would inform strategies to decrease antibiotic resistance. We investigated the early-life exposures and taxonomic signatures associated with resistome development over the first year of life in a large, prospective cohort in the United States. Shotgun metagenomic sequencing was used to profile both microbial composition and ARGs in stool samples collected at 6 weeks and 1 year of age from infants enrolled in the New Hampshire Birth Cohort Study. Negative binomial regression and statistical modeling was used to examine infant factors such as sex, delivery mode, feeding method, gestational age, antibiotic exposure, and infant gut microbiome composition in relation to the diversity and relative abundance of ARGs.Results: Metagenomic sequencing was performed on paired samples from 195 full term (at least 37 weeks’ gestation) and 15 late preterm (33-36 weeks’ gestation) infants. 6-week samples compared to 1-year samples had 4.37 times (95% CI: 3.54-5.39) the rate of harboring ARGs. The majority of ARGs that were at a greater relative abundance at 6 weeks (chi-squared p < 0.01) worked through the mechanism of antibiotic efflux (i.e., by pumping antibiotics out of the cell). The overall relative abundance of the resistome was strongly correlated with Proteobacteria (Spearman correlation = 78.9%) and specifically E. coli (62.2%) relative abundance in the gut microbiome. Among infant characteristics, delivery mode was most strongly associated with the diversity and relative abundance of ARGs. Infants born via cesarean delivery had a higher risk of harboring unique ARGs [relative risk = 1.12 (95% CI: 0.97 – 1.29)] as well as a having an increased risk for overall ARG relative abundance [relative risk = 1.43 (95% CI: 1.12 – 1.84)] at 1 year compared to infants born vaginally. Additionally, 6 specific ARGs were at a greater relative abundance in infants delivered by cesarean section compared to vaginally delivered infants across both time points. Conclusions: Our findings suggest that the developing infant gut resistome may be alterable by early-life exposures. Establishing the extent to which infant characteristics and early-life exposures impact the resistome can ultimately lead to interventions that decrease the transmission of ARGs and thus the possibility of antibiotic resistant life threatening infections.


2007 ◽  
Vol 5 (2) ◽  
pp. 267-282 ◽  
Author(s):  
Jeremy Olstadt ◽  
James Jay Schauer ◽  
Jon Standridge ◽  
Sharon Kluender

Since 2002, the United States Environmental Protection Agency (USEPA) has approved ten enzyme-based total coliform and E. coli detection tests for examination of drinking water. These tests include: Colilert®, Colilert-18®, Colisure®, m-Coli Blue 24®, Readycult® Coliforms 100, Chromocult®, Coliscan®, E*Colite®, Colitag™ and MI Agar. The utility of the enzyme based test systems is based on both the ability of the test to detect the target organisms at low levels and the ability of the test system to suppress the growth of non-target organisms that might result in false positive results. Differences in the ability of some of these methods to detect total coliform and E. coli, as well as suppress Aeromonas spp., a common cause of “false positive” results, have been observed. As a result, this study was undertaken to elucidate the strengths and weaknesses of each method. Water samples were collected from three geographically and chemically diverse groundwaters in Wisconsin. One-hundred milliliter aliquots were individually spiked with both low concentrations (one to ten organisms) and high concentrations (fifty to one-hundred) of each of five different total coliform organisms (Serratia, Citrobacter, Enterobacter, E. coli, & Klebsiella). These spiked samples were used to test the capability of ten enzyme-based test systems to both detect and enumerate the spiked organisms. In addition, 100 ml samples were independently spiked with two different strains of Aeromonas spp. at six different levels, to assess the ability of each enzyme-based test to suppress Aeromonas spp. Analysis of the data indicated that wide variability exists among USEPA approved tests to detect and quantify total coliforms, as well as suppress Aeromonas spp.


Author(s):  
Giorgio Casaburi ◽  
Rebbeca Duar ◽  
Heather K. Brown ◽  
Ryan Mitchell ◽  
Sufyan Kazi ◽  
...  

Biomedicines ◽  
2020 ◽  
Vol 8 (1) ◽  
pp. 8 ◽  
Author(s):  
Angelos K. Sikalidis ◽  
Adeline Maykish

Type 2 diabetes mellitus (T2DM) is a disease that affects over 9% of the United States population and is closely linked to obesity. While obesity was once thought to stem from a sedentary lifestyle and diets high in fat, recent evidence supports the idea that there is more complexity pertinent to the issue. The human gut microbiome has recently been the focus in terms of influencing disease onset. Evidence has shown that the microbiome may be more closely related to T2DM than what was originally thought. High fat diets typically result in poor microbiome heath, which then shifts the gut into a state of dysbiosis. Dysbiosis can then lead to metabolic deregulation, including increased insulin resistance and inflammation, two key factors in the development of T2DM. The purpose of this review is to discuss how microbiome relates to T2DM onset, especially considering obesity, insulin resistance, and inflammation.


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