scholarly journals Codon Usage Bias and RNA Secondary Structures Analysis for Virus Resistant Genes in Arabidopsis thaliana and Oryza sativa

2014 ◽  
Vol 3 (2) ◽  
pp. 81-91 ◽  
Author(s):  
Muhammad Younas Khan Barozai
Keyword(s):  
Arabidopsis Thaliana ◽  
Oryza Sativa ◽  
Codon Usage ◽  
Codon Usage Bias ◽  
Secondary Structures ◽  
Rna Secondary Structures ◽  
Resistant Genes

Synonymous codon usage bias in Oryza sativa

Plant Science ◽  
2004 ◽  
Vol 167 (1) ◽  
pp. 101-105 ◽  
Author(s):  
Qingpo Liu ◽  
Ying Feng ◽  
Xin’ai Zhao ◽  
Hui Dong ◽  
Qingzhong Xue
Keyword(s):  
Oryza Sativa ◽  
Codon Usage ◽  
Codon Usage Bias ◽  
Synonymous Codon ◽  
Synonymous Codon Usage ◽  
Synonymous Codon Usage Bias

scholarly journals Patterns of Codon Usage Bias in WRKY Genes of Brassica rapa and Arabidopsis thaliana

2019 ◽  
Vol 11 (4) ◽  
pp. 76
Author(s):  
Snigdha Srivastava ◽  
Sheetal Chanyal ◽  
Ashutosh Dubey ◽  
A. K. Tewari ◽  
Gohar Taj
Keyword(s):  
Arabidopsis Thaliana ◽  
Transcription Factor ◽  
Codon Usage ◽  
Brassica Rapa ◽  
Stress Responses ◽  
Codon Usage Bias ◽  
Wrky Transcription Factor ◽  
Codon Usage Pattern ◽  
Transcription Factor Family ◽  
Synonymous Codons

Codon usage bias (CUB) is defined as the selective and nonrandom use of synonymous codons by the organism for encoding the amino acids. One of the important plant transcription factor family is the ‘WRKY’ whose role has been investigated in the regulation of abiotic and biotic stress responses in plants. In this paper, the codon usage pattern of the WRKY transcription factor of the two important plant species Arabidopsis thaliana and Brassica rapa has been investigated. Various codon usage indices like ENc, CAI, correspondence analysis, RSCU analysis, neutrality plot and hierarchial clustering has been done. The GC codon status was high in Arabidopsis. The RSCU analysis of codons revealed that codons coding for arginine was maximum in both the plant species.Our results propose that natural selection was the main dominating factor guiding the evolution of different WRKY genes in both Arabidopsis thaliana and Brassica rapa.

scholarly journals Stress induced MAPK genes show distinct pattern of codon usage in Arabidopsis thaliana, Glycine max and Oryza sativa

2014 ◽  
Vol 10 (7) ◽  
pp. 436-442 ◽  
Author(s):  
H Surachandra Singha ◽  
◽  
Supriyo Chakraborty ◽  
Himangshu Deka ◽  
◽  
...  
Keyword(s):  
Arabidopsis Thaliana ◽  
Oryza Sativa ◽  
Glycine Max ◽  
Codon Usage ◽  
Distinct Pattern

scholarly journals Patterns of genome-wide codon usage bias in tobacco, tomato and potato

2021 ◽  
Vol 35 (1) ◽  
pp. 657-664
Author(s):  
Ali Mostafa Anwar ◽  
Maha Aljabri ◽  
Mohamed El-Soda
Keyword(s):  
Codon Usage ◽  
Codon Usage Bias ◽  
Genome Wide
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