Cloning and optimizing the expression of the DHDPS gene in the Medicago truncatula

2019 ◽  
Author(s):  
Hoang Thi Kim Hong ◽  
Pham Thi Hong Trang ◽  
Dang Thanh Long ◽  
Nguyen Thi Quynh Trang
Keyword(s):  
Escherichia Coli ◽  
Medicago Truncatula ◽  
Culture Conditions ◽  
Coding Region ◽  
E Coli ◽  
Escherichia Coli Bl21 ◽  
Ncbi Accession ◽  
Molecular Masses ◽  
Induction Times ◽  
Topo Vector

Medicago truncatula seeds were cultured and developed in Thua Thien Hue province, Vietnam, and they were used as materials for cloning a DHDPS gene with the encoding of the isozyme dihydrodipicolinate synthase (DHDPS) as well as optimizing the culture conditions for having the highest DHDPS gene expression in Escherichia coli BL21 StarTM (DE3) cells. The results revealed that the coding region of the DHDPS gene from M. truncatula was 100% similar with M. truncatula 4-hydroxy-tetrahydrodipicolinate synthase 2 (DHDPS2) submitted in NCBI (accession number: XM_013589555.2), coding for a long polypeptide of 307 amino acid with the molecular mass of about 33495 Da (Protein ID: XP_013445009.1). The DHDPS gene was successfully expressed in the Escherichia coli BL21 StarTM (DE3) cells with a pET200 / D-TOPO vector, and this produced the DHDPS2 protein with molecular masses of approximately 33.87 kDa (»33.5 kDa of DHDPS2 and 3.7 kDa of fusion fragment of pET 200/D-TOPO vector). The effects of the six different culture mediums of LB, SOB, SOC, YJ, HSG and TB, the induction times of 2h, 4h, 6h, 8h, 10h and 12h, and the inducer concentrations of 0.2 mM; 0.5 mM; 0.7 mM; 1.0 mM; 1.2 mM and 1.5 mM IPTG (Isopropyl â-D-1-thiogalactopyranoside) were also investigated for the purpose of optimising the expression of DHDPS2 in E. coli cells, and it was found that strong expression of recombinant DHDPS2 protein in E. coli. BL21 (DE3) cells occurred on the TB, HSG and YJ culture mediums after 8 hours with 0.2 mM inducible IPTG (BioRad).

scholarly journals Induced immune response of Escherichia coli BL21 expressing recombinant MSP1a and MSP1b proteins of Anaplasma marginale

2009 ◽  
Vol 52 (spe) ◽  
pp. 113-120 ◽  
Author(s):  
Katia Tamekuni ◽  
Marilda Carlos Vidotto ◽  
Samuel Rodrigues Felix ◽  
Michelle Igarashi ◽  
João Luis Garcia ◽  
...  
Keyword(s):  
Escherichia Coli ◽  
Immune Response ◽  
Western Blot ◽  
Molecular Mass ◽  
Outer Membrane ◽  
Humoral Response ◽  
Anaplasma Marginale ◽  
E Coli ◽  
Escherichia Coli Bl21 ◽  
Molecular Masses

This work aims to evaluate the potential of immunization with E. coli BL21 expressing the recombinant rMSP1a and rMSP1b proteins of Anaplasma marginale. E. coli BL21 was transformed with recombinant plasmids pET102/msp1α and pET101/msp1β, and rMSP1a and rMSP1b were expressed after induction by IPTG. BALB/c mice were vaccinated with formolized BL21/rMSP1a and BL21/rMSP1b, and the production in mice sera of whole IgG was determined by ELISA. The mice immunized with BL21/rMSP1a showed a better humoral response for whole IgG when compared to the mice immunized with BL21/rMSP1b; these mice exhibited a small response after the second vaccination. Sera of mice immunized with BL21/rMSP1a reacted via western blot with BL21 and rMSP1a, with molecular masses varying from 70 to 105 kDa. Sera of mice immunized with BL21/rMSP1b reacted with BL21 and rMSP1b with a molecular mass of 100 kDa. These results demonstrate that BL21 containing rMSP1a and rMSP1b in the outer membrane were able to produce an immune response in mice, reinforcing its use in vaccine models against bovine anaplasmosis.

scholarly journals Chaperone-Mediated Folding and Maturation of the Penicillin Acylase Precursor in the Cytoplasm of Escherichia coli

2005 ◽  
Vol 71 (10) ◽  
pp. 6247-6253 ◽  
Author(s):  
Yali Xu ◽  
Chiao-Ling Weng ◽  
Niju Narayanan ◽  
Ming-Yi Hsieh ◽  
William A. Anderson ◽  
...  
Keyword(s):  
Escherichia Coli ◽  
Formation Rate ◽  
Penicillin Acylase ◽  
Culture Conditions ◽  
Trigger Factor ◽  
Wild Type ◽  
Coding Region ◽  
Major Step ◽  
E Coli ◽  
Processing Steps

ABSTRACT Expression of the leaderless pac gene (LL pac), which lacks the coding region for the signal peptide of penicillin acylase (PAC), in Escherichia coli was conducted. It was demonstrated that the PAC precursor, proPAC, can be produced and even processed to form mature PAC in the cytoplasm, indicating that the posttranslational processing steps for PAC maturation can occur in both the periplasm and the cytoplasm of E. coli. The outcome of proPAC folding and PAC maturation could be affected by several factors, such as inducer type, proPAC formation rate, and chaperone availability. Misfolding of proPAC in the cytoplasm could be partially resolved through the coexpression of cytoplasmic chaperones, such as trigger factor, GroEL/ES, or DnaK/J-GrpE. The three chaperones tested showed different extents of the effect on proPAC solublization and PAC maturation, and trigger factor had the most prominent one. However, the chaperone-mediated solublization of proPAC did not guarantee its maturation, which is usually limited by the first autoproteolytic step. It was observed that arabinose could act as an effective inducer for the induction of LL pac expression regulated by the lac-derived promoter system of trc. In addition, PAC maturation could be highly facilitated by arabinose supplementation and coexpression of trigger factor, suggesting that the coordination of chaperone systems with proper culture conditions could dramatically impact recombinant protein production. This study suggests that folding/misfolding of proPAC could be a major step limiting the overproduction of PAC in E. coli and that the problem could be resolved through the search for appropriate chaperones for coexpression. It also demonstrates the analogy in the issues of proPAC misfolding as well as the expression bottleneck occurring in the cytoplasm (i.e., LL pac expression) and those occurring in the periplasm (i.e., wild-type pac expression).

Impact of Preinoculation Culture Conditions on the Behavior of Escherichia coli O157:H7 Inoculated onto Romaine Lettuce (Lactuca sativa) Plants and Cut Leaf Surfaces

2009 ◽  
Vol 72 (7) ◽  
pp. 1553-1559 ◽  
Author(s):  
CHRISTOPHER G. THEOFEL ◽  
LINDA J. HARRIS
Keyword(s):  
Escherichia Coli ◽  
High Standard ◽  
Culture Conditions ◽  
Escherichia Coli O157 ◽  
Late Stationary Phase ◽  
Romaine Lettuce ◽  
Preparation Methods ◽  
E Coli ◽  
Leaf Surfaces ◽  
Inoculum Preparation

Inoculum preparation methods can impact growth or survival of organisms inoculated into foods, thus complicating direct comparison of results among studies. The objective of this study was to evaluate preinoculation culture preparation for impact on Escherichia coli O157:H7 inoculated onto leaves of romaine lettuce plants and cut leaf surfaces. E. coli O157:H7 was grown quiescently or shaken at 15, 25, or 37°C to different growth phases in tryptic soy or M9 minimal salts broth or agar. Cells were harvested, washed, and suspended in 0.1% peptone, Milli Q water, or well water and refrigerated for 0 or 18 h. Prepared inoculum was spotted onto cut romaine lettuce (10 μl; 3 × 104 CFU/10 g) or onto romaine lettuce plants (20 μl; 3 × 106 CFU per leaf). Cut lettuce was sealed in 100-cm2 bags (made from a commercial polymer film) and incubated at 5 or 20°C. Lettuce plants were held at 23°C for 24 h. For all tested conditions, levels of E. coli O157:H7 increased at 20°Concut lettuce and decreased on cut lettuce stored at 5°C or on leaves of lettuce plants. At 20°C, preinoculation culture conditions had little impact on growth of E. coli O157:H7 on cut lettuce. However, survival at 5°C was significantly better (P < 0.05) for cultures grown at 15 or 37°C in minimal medium and to late stationary phase. Impact of preinoculation handling on survival on lettuce plants was less clear due to relatively high standard deviations observed among samples.

scholarly journals Regulation of P-Fimbrial Phase Variation Frequencies in Escherichia coli CFT073

2007 ◽  
Vol 75 (7) ◽  
pp. 3325-3334 ◽  
Author(s):  
Nicola Holden ◽  
Makrina Totsika ◽  
Lynn Dixon ◽  
Kirsteen Catherwood ◽  
David L. Gally
Keyword(s):  
Escherichia Coli ◽  
Phase Transition ◽  
Regulatory Region ◽  
Phase Variation ◽  
Culture Conditions ◽  
Host Tissue ◽  
Clinical Isolates ◽  
E Coli ◽  
K 12 ◽  
First Time

ABSTRACT Adherence of uropathogenic Escherichia coli to host tissue is required for infection and is mediated by fimbriae, such as pyelonephritis-associated pili (Pap). Expression of P fimbriae is regulated by phase variation, and to date, phase transition frequencies have been measured only for pap regulatory region constructs integrated into the E. coli K-12 chromosome. The aim of this work was to measure P phase transition frequencies in clinical isolates for the first time, including frequencies for the sequenced strain E. coli CFT073. P fimbriation and associated phase transition frequencies were measured for two E. coli clinical isolates and compared with levels for homologous pap constructs in E. coli K-12. Fimbriation and off-to-on transition frequencies were always higher in the clinical isolate. It was concluded that the regulatory inputs controlling papI expression are likely to be different in E. coli CFT073 and E. coli K-12 as (i) phase variation could be stimulated in E. coli K-12 by induction of papI and (ii) the level of expression of a papI::gfp + fusion was higher in E. coli CFT073 than in E. coli K-12. Furthermore, phase transition frequencies for the two E. coli CFT073 pap clusters were shown to be different depending on the culture conditions, indicating that there is a hierarchy of expression depending on signal inputs.

scholarly journals Isolation and characterization of recombinant Drosophila Copia aspartic proteinase

2006 ◽  
Vol 399 (3) ◽  
pp. 535-542 ◽  
Author(s):  
Senarath B. P. Athauda ◽  
Katsuji Yoshioka ◽  
Tadayoshi Shiba ◽  
Kenji Takahashi
Keyword(s):  
Active Site ◽  
Cleavage Site ◽  
Bovine Insulin ◽  
Precursor Protein ◽  
Coding Region ◽  
Aspartic Proteinases ◽  
E Coli ◽  
Isolation And Characterization ◽  
Nacl Concentration ◽  
Molecular Masses

The wild type Copia Gag precursor protein of Drosophila melanogaster expressed in Escherichia coli was shown to be processed autocatalytically to generate two daughter proteins with molecular masses of 33 and 23 kDa on SDS/PAGE. The active-site motif of aspartic proteinases, Asp-Ser-Gly, was present in the 23 kDa protein corresponding to the C-terminal half of the precursor protein. The coding region of this daughter protein (152 residues) in the copia gag gene was expressed in E. coli to produce the recombinant enzyme protein as inclusion bodies, which was then purified and refolded to create the active enzyme. Using the peptide substrate His-Gly-Ile-Ala-Phe-Met-Val-Lys-Glu-Val-Asn (cleavage site: Phe–Met) designed on the basis of the sequence of the cleavage-site region of the precursor protein, the enzymatic properties of the proteinase were investigated. The optimum pH and temperature of the proteinase toward the synthetic peptide were 4.0 and 70 °C respectively. The proteolytic activity was increased with increasing NaCl concentration in the reaction mixture, the optimum concentration being 2 M. Pepstatin A strongly inhibited the enzyme, with a Ki value of 15 nM at pH 4.0. On the other hand, the active-site residue mutant, in which the putative catalytic aspartic acid residue was mutated to an alanine residue, had no activity. These results show that the Copia proteinase belongs to the family of aspartic proteinases including HIV proteinase. The B-chain of oxidized bovine insulin was hydrolysed at the Leu15−–Tyr16 bond fairly selectively. Thus the recombinant Copia proteinase partially resembles HIV proteinase, but is significantly different from it in certain aspects.

scholarly journals Role of Ribosome Release in Regulation oftna Operon Expression in Escherichia coli

1999 ◽  
Vol 181 (5) ◽  
pp. 1530-1536 ◽  
Author(s):  
Kouacou Vincent Konan ◽  
Charles Yanofsky
Keyword(s):  
Escherichia Coli ◽  
Mutant Allele ◽  
Stop Codon ◽  
Leader Peptide ◽  
Coding Region ◽  
Reporter Construct ◽  
E Coli ◽  
Operon Expression ◽  
Basal Level Expression

ABSTRACT Expression of the degradative tryptophanase (tna) operon of Escherichia coli is regulated by catabolite repression and tryptophan-induced transcription antitermination. In cultures growing in the absence of added tryptophan, transcription of the structural genes of the tna operon is limited by Rho-dependent transcription termination in the leader region of the operon. Tryptophan induction prevents this Rho-dependent termination, and requires in-frame translation of a 24-residue leader peptide coding region, tnaC, that contains a single, crucial, Trp codon. Studies with a lacZ reporter construct lacking the spacer region between tnaC and the first major structural gene,tnaA, suggested that tryptophan induction might involvecis action by the TnaC leader peptide on the ribosome translating the tnaC coding region. The leader peptide was hypothesized to inhibit ribosome release at thetnaC stop codon, thereby blocking Rho’s access to the transcript. Regulatory studies with deletion constructs of thetna operon of Proteus vulgaris supported this interpretation. In the present study the putative role of thetnaC stop codon in tna operon regulation inE. coli was examined further by replacing the naturaltnaC stop codon, UGA, with UAG or UAA in atnaC-stop codon-tnaA′-′lacZ reporter construct. Basal level expression was reduced to 20 and 50% when the UGA stop codon was replaced by UAG or UAA, respectively, consistent with the finding that in E. coli translation terminates more efficiently at UAG and UAA than at UGA. Tryptophan induction was observed in strains with any of the stop codons. However, when UAG or UAA replaced UGA, the induced level of expression was also reduced to 15 and 50% of that obtained with UGA as the tnaC stop codon, respectively. Introduction of a mutant allele encoding a temperature-sensitive release factor 1, prfA1, increased basal level expression 60-fold when the tnaC stop codon was UAG and 3-fold when this stop codon was UAA; basal level expression was reduced by 50% in the construct with the natural stop codon, UGA. In strains with any of the three stop codons and the prfA1mutation, the induced levels of tna operon expression were virtually identical. The effects of tnaC stop codon identity on expression were also examined in the absence of Rho action, using tnaC-stop codon-′lacZ constructs that lack the tnaC-tnaA spacer region. Expression was low in the absence of tnaC stop codon suppression. In most cases, tryptophan addition resulted in about 50% inhibition of expression when UGA was replaced by UAG or UAA and the appropriate suppressor was present. Introduction of the prfA1 mutant allele increased expression of the suppressed construct with the UAG stop codon; tryptophan addition also resulted in ca. 50% inhibition. These findings provide additional evidence implicating the behavior of the ribosome translating tnaC in the regulation of tna operon expression.

scholarly journals From reporters to endogenous genes: the impact of the first five codons on translation efficiency in Escherichia coli

2019 ◽  
Author(s):  
Mariana H. Moreira ◽  
Géssica C. Barros ◽  
Rodrigo D. Requião ◽  
Silvana Rossetto ◽  
Tatiana Domitrovic ◽  
...  
Keyword(s):  
Escherichia Coli ◽  
Protein Synthesis ◽  
Protein Expression ◽  
Nucleotide Composition ◽  
Control Mechanisms ◽  
Translation Efficiency ◽  
Coding Region ◽  
E Coli ◽  
Endogenous Proteins ◽  
The Impact

ABSTRACTTranslation initiation is a critical step in the regulation of protein synthesis, and it is subjected to different control mechanisms, such as 5’ UTR secondary structure and initiation codon context, that can influence the rates at which initiation and consequentially translation occur. For some genes, translation elongation also affects the rate of protein synthesis. With a GFP library containing nearly all possible combinations of nucleotides from the 3rd to the 5th codon positions in the protein coding region of the mRNA, it was previously demonstrated that some nucleotide combinations increased GFP expression up to four orders of magnitude. While it is clear that the codon region from positions 3 to 5 can influence protein expression levels of artificial constructs, its impact on endogenous proteins is still unknown. Through bioinformatics analysis, we identified the nucleotide combinations of the GFP library in Escherichia coli genes and examined the correlation between the expected levels of translation according to the GFP data with the experimental measures of protein expression. We observed that E. coli genes were enriched with the nucleotide compositions that enhanced protein expression in the GFP library, but surprisingly, it seemed to affect the translation efficiency only marginally. Nevertheless, our data indicate that different enterobacteria present similar nucleotide composition enrichment as E. coli, suggesting an evolutionary pressure towards the conservation of short translational enhancer sequences.

scholarly journals Codon optimization of Col H gene encoding Clostridium histolyticum collagenase to express in Escherichia coli

2014 ◽  
Author(s):  
Hamzeh Alipour ◽  
Abbasali Raz ◽  
Navid Dinparast Djadid ◽  
Abbas Rami ◽  
Seyed Mohammad Amin Mahdian
Keyword(s):  
Escherichia Coli ◽  
Codon Usage ◽  
Codon Optimization ◽  
Coding Region ◽  
Gene Encoding ◽  
E Coli ◽  
Clostridium Histolyticum ◽  
Optimal Codons ◽  
H Gene ◽  
Clostridium Histolyticum Collagenase

A given amino acid sequence can be encoded by a huge number of different nucleic acid sequences. These sequences, however, prove not to be equally useful. The choice of sequence can significantly impact the expression of an encoded protein. As regards the importance of protein-coding sequence and promising industrial and medicinal applications of Clostridium histolyticum collagenase, this study examined the codon optimization of the Col H gene so as to enhance collagenase expression in Escherichia coli (E. coli). The coding region of mature Col H gene was optimized according to the codon usage of E. coli using Gene Designer software (DNA 2.0). The results revealed that relative frequency of codon usage in Col H gene was adapted to the most preferred triplets in E. coli in such a way that codon usage bias in E. coli was enhanced after codon optimization. Similarly, the higher level of collagenase expression was more likely the result of substituting rare codons with optimal codons. As has been reported elsewhere, the findings from this study suggest that codon optimization provides a theoretical improvement in Col H gene expression in E. coli. In spite of that, experimental research is needed to confirm the improvement.

scholarly journals Immunogenic Properties of Recombinant Enzymes from Bothrops ammodytoides towards the Generation of Neutralizing Antibodies against Its Own Venom

Toxins ◽  
2019 ◽  
Vol 11 (12) ◽  
pp. 702
Author(s):  
Herlinda Clement ◽  
Ligia Luz Corrales-García ◽  
Damaris Bolaños ◽  
Gerardo Corzo ◽  
Elba Villegas
Keyword(s):  
Serine Protease ◽  
Serine Proteases ◽  
Neutralizing Antibodies ◽  
Venom Gland ◽  
Amino Acid Residues ◽  
Recombinant Enzymes ◽  
E Coli ◽  
Molecular Masses ◽  
Topo Vector ◽  
Immunogenic Properties

Bothropic venoms contain enzymes such as metalloproteases, serine-proteases, and phospholipases, which acting by themselves, or in synergism, are the cause of the envenomation symptoms and death. Here, two mRNA transcripts, one that codes for a metalloprotease and another for a serine-protease, were isolated from a Bothrops ammodytoides venom gland. The metalloprotease and serine-protease transcripts were cloned on a pCR®2.1-TOPO vector and consequently expressed in a recombinant way in E. coli (strains Origami and M15, respectively), using pQE30 vectors. The recombinant proteins were named rBamSP_1 and rBamMP_1, and they were formed by an N-terminal fusion protein of 16 amino acid residues, followed by the sequence of the mature proteins. After bacterial expression, each recombinant enzyme was recovered from inclusion bodies and treated with chaotropic agents. The experimental molecular masses for rBamSP_1 and rBamMP_1 agreed with their expected theoretical ones, and their secondary structure spectra obtained by circular dichroism were comparable to that of similar proteins. Additionally, equivalent mixtures of rBamSP_1, rBamMP_1 together with a previous reported recombinant phospholipase, rBamPLA2_1, were used to immunize rabbits to produce serum antibodies, which in turn recognized serine-proteases, metalloproteases and PLA2s from B. ammodytoides and other regional viper venoms. Finally, rabbit antibodies neutralized the 3LD50 of B. ammodytoides venom.

A Mutation That Improves Soluble Recombinant Hemoglobin Accumulation in Escherichia coli in Heme Excess

1999 ◽  
Vol 65 (2) ◽  
pp. 640-647 ◽  
Author(s):  
Michael J. Weickert ◽  
Maria Pagratis ◽  
Christopher B. Glascock ◽  
Richard Blackmore
Keyword(s):  
Escherichia Coli ◽  
Binding Pocket ◽  
Culture Conditions ◽  
Molar Ratio ◽  
Cell Protein ◽  
Wild Type ◽  
E Coli ◽  
Soluble Cell ◽  
Hemoglobin Variants ◽  
High Level

ABSTRACT High-level expression of soluble recombinant human hemoglobin (rHb) in Escherichia coli was obtained with several hemoglobin variants. Under identical conditions, two rHbs containing the Presbyterian mutation (Asn-108→Lys) in β-globin accumulated to approximately twofold less soluble globin than rHbs containing the corresponding wild-type β-globin subunit accumulated. The β-globin Providence(asp) mutation (Lys-82→Asp) significantly improved soluble rHb accumulation compared to the wild-type β-globin subunit and restored soluble accumulation of rHbs containing the Presbyterian mutation to wild-type levels. The Providenceasp substitution introduced a negatively charged residue into the normally cationic 2,3-bisphosphoglycerate binding pocket, potentially reducing the electrostatic repulsion in the absence of the polyanion. The average soluble globin accumulation when there was coexpression of di-α-globin and β-Lys-82→Asp-globin (rHb9.1) and heme was present in at least a threefold molar excess was 36% ± 3% of the soluble cell protein in E. coli. The average total accumulation (soluble globin plus insoluble globin) was 56% ± 7% of the soluble cell protein. Fermentations yielded 6.0 ± 0.3 g of soluble rHb9.1 per liter 16 h after induction and 6.4 ± 0.2 g/liter 24 h after induction. The average total globin yield was 9.4 g/liter 16 h after induction. High-level accumulation of soluble rHb in E. coli depends on culture conditions, the protein sequence, and the molar ratio of the heme cofactor added.

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