scholarly journals ​Isolation and Identification of Different Fungal Species from Major Kharif Vegetables of Sindh Province, Pakistan

2021 ◽  
Author(s):  
S. Pahnwar ◽  
M.I. Khaskheli ◽  
A.J. Khaskheli ◽  
K.H. Wagan ◽  
G.M. Thebho ◽  
...  
Keyword(s):  
Leaf Spot ◽  
Tomato Fruit ◽  
Fungal Species ◽  
Control Measures ◽  
Fruit Rot ◽  
Infection Frequency ◽  
Vegetable Crops ◽  
Isolation And Identification ◽  
Penicillium Sp ◽  
Chilli Fruit

Background: Altenaria species are posing major threat to vegetable crops nowadays, thus it is of utmost importance to identify its different species, so that potential control measures may be explored. Methods: The isolation and identification of different fungi was conducted from major Kharif vegetables, tomato, chilli and eggplant. Samples showing typical symptoms of fruit rot and leaf spot were collected from fields and then pathogens were isolated and identified at laboratory using standard procedures. Result: The total of 07 fungal species, Alternaria alternata, A. solani, Aspergillus flavus, A. niger, Fusarium oxysporum, Pencillium sp. and Rhizopus stolonifer isolated from tomato fruit rot. Similarly, 07 fungi viz; A. alternata, A. tenuissima, A. flavus, A. niger, Colletotrichum capisi, Penicillium sp. and R. stolonifer from chilli fruit rot and 06 fungi viz; A. alternata, A. flavus, A. niger, F. solani, Penicillium sp. and R. stolonifer from eggplant leaf spots were isolated. Significantly highest infection frequency was recorded for A. solani (48.83%) and A. tenuissima (44%) from tomato and chilli fruit rot, respectively. From eggplant leaf spot it was significantly highest for A. alternata (34.5%). Study concludes that 03 species, A. solani, A. tenuissima and A. alternata, dominantly damaged tomato, chilli fruits and eggplant leaves.

scholarly journals Stachybotriaceae on Cucurbits Demystified: Genetic Diversity and Pathogenicity of Ink Spot Pathogens

Plant Disease ◽  
2020 ◽  
Vol 104 (8) ◽  
pp. 2242-2251
Author(s):  
Gabriel Rennberger ◽  
Anthony P. Keinath
Keyword(s):  
South Carolina ◽  
Leaf Spot ◽  
Sequence Data ◽  
Spatial Scales ◽  
Fungal Species ◽  
Vegetable Crops ◽  
Tomato Plants ◽  
Predominant Species ◽  
The Family ◽  
The Common

Recently, the incidence of Myrothecium leaf spot, a foliar disease of watermelon, has increased in South Carolina. However, the identity of the fungal species responsible for outbreaks of this disease has not been determined. Sequence data from four partial gene regions were used to conduct Bayesian inference in order to identify 95 isolates of Stachybotriaceae. Isolates were collected in South Carolina between July 2015 and May 2018. In total, six species of Stachybotriaceae were identified on watermelon and two other cucurbits: Albifimbria verrucaria, Gregatothecium humicola, Paramyrothecium foliicola, P. humicola, Xenomyrothecium tongaense, and Xepicula leucotricha. Two species, G. humicola and P. foliicola, were the predominant species found. Within these two species, genetic differences within small spatial scales were detected. Five species (all except Xenomyrothecium tongaense) were tested in experiments to determine their pathogenicity and relative virulence on three hosts grown in rotation in South Carolina. Southern pea plants were less susceptible than watermelon and tomato plants, which were equally susceptible. This constitutes the first reliable report of pathogenicity of any of the five tested species of Stachybotriaceae on these three vegetable crops. Another important finding was that none of the isolates were identified as P. roridum, the species considered to be the only causal agent of Myrothecium leaf spot on cucurbits. We propose the common name “ink spot” for the foliar phase of diseases caused by genera within the family Stachybotriaceae. This name is descriptive and likely to be accepted by growers. To prevent further loss incurred by ink spot, watermelon and tomato crops should be monitored for this disease.

scholarly journals Diversity of Pathogenic Fungi and Disease on Vegetable Crops at Polyculture Systems

2021 ◽  
Vol 13 (2) ◽  
pp. 158-168
Author(s):  
Eddy Tri Sucianto ◽  
Muachiroh Abbas
Keyword(s):  
Random Sampling ◽  
Important Implication ◽  
Tomato Fruit ◽  
Pathogenic Fungi ◽  
Fungal Species ◽  
Vegetable Crops ◽  
Fungal Identification ◽  
Vegetable Farming ◽  
Alternaria Sp ◽  
Fusarium Sp

Vegetables polyculture system is potentially increasing pathogenic fungi diversity because various plant hosts are available. There is no data about patogenic fungi diversity at polyculture vegetable farming in Serang village, District of Karangreja, Purbalingga Regency. This study aimed to determine patogenic fungal diversity and disease percentage caused by the fungi at polyculture vegetable farming in Serang village, District of Karangreja, Purbalingga Regency. This research used purposive random sampling. Infected plants were collected at ten polyculture farming locations and fungal identification was performed at the laboratory. Fungi were identified morphologically based on the signs, symptoms, as well as macroscopic and microscopic characters. The fungi's pathogenity was determined by applying Koch's postulate test. The data were analyzed descriptively through literature comparison. The results showed that seven fungal species were found at polyculture farms in Serang Village. The obtained fungi were Colletotrichum sp., Fusarium sp., Alternaria sp., Septoria sp., Cercospora sp., Botryodiplodia sp., and Nigrospora sp. The lowest damage was 18.24% on tomato fruit infected by Fusarium sp. and the highest was on chili plants which was caused by Colletotrichum sp. The data is the first report for polycuture system. The obtained data has important implication for the management of vegetables farming in Serang Village.

scholarly journals Assessment of Airborne Fungi in Childrens Hospital Located in Kolkata India

2021 ◽  
Vol 6 (3) ◽  
pp. 228-234
Author(s):  
Debasmita Ghosh Dhar ◽  
Priyanka Dhar ◽  
Ashok Kumar Das ◽  
Naim Uddin
Keyword(s):  
Fungal Spores ◽  
Morphological Characteristics ◽  
Airborne Fungi ◽  
Fungal Species ◽  
Control Measures ◽  
Outdoor Environment ◽  
Hospital Environment ◽  
Potential Health ◽  
Penicillium Sp ◽  
Aspergillus Sp

Fungal spores contribute significant concentration in the bioaerosol of various environmental conditions which may have potential health threats. Our study was aimed at determining the presence of disseminating airborne fungi in a pediatric government hospital in Kolkata. The study was started from the post-monsoon to the middle winter (August to December 2008) in the indoor and outdoor environment of the hospital with temperature and humidity ranges of 11.2 °C-35.2 °C and 70 per cent-90 per cent, respectively. Air sampling was performed at 14 days intervals during the daytime following the gravitation settling method, and the fungal colonies were identified based on micro and macro morphological characteristics. The percentage contribution of individual fungal species from the outdoor section and indoor units (Newborn Baby Ward, Respiratory Care Unit, Step Down Ward, Thalassemia Care Unit) of the hospital environment was calculated. We observed profound aeromycofloral diversity where the outdoor environment was mostly colonised by sterile hyphae (16.43 %) along with the allergenic Aspergillus fumigatus (13.6 %) and Penicillium sp. (12.32 %). Conversely, an abundance of Cladosporium herbarum (24.7 %) and Penicillium sp. (17.85 %) followed by Aspergillus sp. (12.9 %) and sterile hyphae (14.51 %) were found in different indoor units. Our results showed the diversity of airborne mycoflora which promotes the trend to health difficulties and thus the hospital environment monitoring along with proper control measures is essential.

Incidence and molecular characterization of fungi and yeast isolated from cultured catfish and Nile tilapia

2020 ◽  
Vol 21 (3) ◽  
pp. 61-66
Author(s):  
Ola Hashem ◽  
Viola Zaki ◽  
Rawia Adawy
Keyword(s):  
Molecular Characterization ◽  
Oreochromis Niloticus ◽  
Nile Tilapia ◽  
Clarias Gariepinus ◽  
Fungal Species ◽  
High Rate ◽  
Fish Farms ◽  
Isolation And Identification ◽  
Penicillium Spp

Objective: To study the incidence and seasonal dynamics of different fungi affected freshwater fishes in Lake Manzala with molecular identification of the isolated fungi. Animals: 300 Nile tilapia (Oreochromis niloticus) and 300 catfish (Clarias gariepinus). Design: Descriptive study. Procedures: Random samples of Oreochromis niloticus (O. niloticus) and Clarias gariepinus (C. gariepinus) were collected from Manzala fish farms. Clinical and postmortem examination of fish was applied. Isolation and identification of different fungi were performed by conventional methods. Furthermore, the molecular characterization of isolated fungi was carried out. Results: C. gariepinus had a higher rate of infection with different fungal species than O. niloticus. Aspergillus spp. (Aspergillus niger and Aspergillus flavus) were the most fungal isolated from the examined fishes, followed by Penicillium spp. and Candida albicans. Aspergillus spp were detected in all seasons with a higher rate in summer and spring. A. flavus, A. niger, Penicillium spp. and C.albicans isolates were amplified from both C. gariepinus and O. niloticus at the specified molecular weight using PCR. Conclusion and clinical relevance: Fungal infection affected the fish showing different external and internal lesions, all species of Aspergillus were found in all seasons with a high rate in, hot seasons, summer and spring. The Prevalence of Penicillium and C. albicans were also reported. All fungal isolates were identified on the phenotypic and molecular bases.

scholarly journals Improved strategies to efficiently isolate thermophilic, thermotolerant, and heat-resistant fungi from compost and soil

2021 ◽  
Vol 20 (3) ◽  
pp. 325-339
Author(s):  
Frederick Witfeld ◽  
Dominik Begerow ◽  
Marco Alexandre Guerreiro
Keyword(s):  
Elevated Temperatures ◽  
Fungal Species ◽  
Dna Barcodes ◽  
Heat Shock Treatment ◽  
Isolation And Identification ◽  
Heat Resistant ◽  
Heat Stable ◽  
Promising Source ◽  
Culture Dependent ◽  
Selection Of

AbstractThermophilic, thermotolerant and heat-resistant fungi developed different physiological traits, enabling them to sustain or even flourish under elevated temperatures, which are life-hostile for most other eukaryotes. With the growing demand of heat-stable molecules in biotechnology and industry, the awareness of heat-adapted fungi as a promising source of respective enzymes and biomolecules is still increasing. The aim of this study was to test two different strategies for the efficient isolation and identification of distinctly heat-adapted fungi from easily accessible substrates and locations. Eight compost piles and ten soil sites were sampled in combination with different culture-dependent approaches to describe suitable strategies for the isolation and selection of thermophilous fungi. Additionally, an approach with a heat-shock treatment, but without elevated temperature incubation led to the isolation of heat-resistant mesophilic species. The cultures were identified based on morphology, DNA barcodes, and microsatellite fingerprinting. In total, 191 obtained isolates were assigned to 31 fungal species, from which half are truly thermophilic or thermotolerant, while the other half are heat-resistant fungi. A numerous amount of heat-adapted fungi was isolated from both compost and soil samples, indicating the suitability of the used approaches and that the richness and availability of those organisms in such environments are substantially high.

scholarly journals Molecular Phylogenetic Diversity and Biological Characterization of Diaporthe Species Associated with Leaf Spots of Camellia sinensis in Taiwan

Plants ◽  
2021 ◽  
Vol 10 (7) ◽  
pp. 1434
Author(s):  
Hiran A. Ariyawansa ◽  
Ichen Tsai ◽  
Jian-Yuan Wang ◽  
Patchareeya Withee ◽  
Medsaii Tanjira ◽  
...  
Keyword(s):  
Camellia Sinensis ◽  
Leaf Spot ◽  
Phylogenetic Trees ◽  
Fungal Infections ◽  
Elongation Factor ◽  
Fungal Species ◽  
Tea Leaves ◽  
Phenotypic Characters ◽  
Leaf Spots ◽  
Molecular Phylogenetic

Camellia sinensis is one of the major crops grown in Taiwan and has been widely cultivated around the island. Tea leaves are prone to various fungal infections, and leaf spot is considered one of the major diseases in Taiwan tea fields. As part of a survey on fungal species causing leaf spots on tea leaves in Taiwan, 19 fungal strains morphologically similar to the genus Diaporthe were collected. ITS (internal transcribed spacer), tef1-α (translation elongation factor 1-α), tub2 (beta-tubulin), and cal (calmodulin) gene regions were used to construct phylogenetic trees and determine the evolutionary relationships among the collected strains. In total, six Diaporthe species, including one new species, Diaporthe hsinchuensis, were identified as linked with leaf spot of C. sinensis in Taiwan based on both phenotypic characters and phylogeny. These species were further characterized in terms of their pathogenicity, temperature, and pH requirements under laboratory conditions. Diaporthe tulliensis, D. passiflorae, and D. perseae were isolated from C. sinensis for the first time. Furthermore, pathogenicity tests revealed that, with wound inoculation, only D. hongkongensis was pathogenic on tea leaves. This investigation delivers the first assessment of Diaporthe taxa related to leaf spots on tea in Taiwan.

The effect of organic compost of Caryocar brasiliense waste against Meloidogyne javanica in two vegetable crops

Nematology ◽  
2021 ◽  
pp. 1-8
Author(s):  
Fabíola de J. Silva ◽  
Regina C.F. Ribeiro ◽  
Adelica A. Xavier ◽  
Vanessa A. Gomes ◽  
Paulo V.M. Pacheco ◽  
...  
Keyword(s):  
Integrated Control ◽  
Meloidogyne Javanica ◽  
Control Measures ◽  
Vegetable Crops ◽  
Root Knot Nematode ◽  
Second Stage ◽  
Tomato Roots ◽  
Crop Development ◽  
Caryocar Brasiliense ◽  
Organic Compost

Summary Root-knot nematodes (Meloidogyne spp.) are responsible for various significant crop losses, which require taking integrated control measures. The present study aimed to identify a possible sustainable approach to the management of Meloidogyne javanica in vegetable crops using an organic compound based on pequi (Caryocar brasiliense) fruit residues. A pot experiment was conducted using cultivars of tomato and lettuce susceptible to M. javanica, with three amendments including inorganic fertiliser, cattle manure and five doses of organic compost with pequi residues. All treatments were inoculated with second-stage juveniles of M. javanica to simulate the root-knot nematode disease in field conditions. Increasing doses of organic compost with pequi residues from 5 kg m−3 to 30 kg m−3 promoted a significant decrease in the nematode population in both cultures evaluated. Organic compost (30 kg m−3) reduced the numbers of galls and eggs of M. javanica by 41.6 and 46.5% in tomato roots, and by 80.3 and 59.2% in lettuce roots, respectively, compared with non-treated control. Organic compost also increased crop development considerably. In general, there was a 43.0% increase in plant development compared to non-treated control. Hence, organic compost of pequi residues could be an alternative to toxic chemical nematicides and recommended as eco-friendly management of M. javanica in vegetable crops.

scholarly journals Isolation and Identification of Sodium Fluoroacetate Degrading Bacteria from Caprine Rumen in Brazil

2012 ◽  
Vol 2012 ◽  
pp. 1-6 ◽  
Author(s):  
Expedito K. A. Camboim ◽  
Arthur P. Almeida ◽  
Michelle Z. Tadra-Sfeir ◽  
Felício G. Junior ◽  
Paulo P. Andrade ◽  
...  
Keyword(s):  
Rumen Fluid ◽  
16S Rrna Gene Sequencing ◽  
Positive Control ◽  
Control Measures ◽  
Rrna Gene ◽  
Isolation And Identification ◽  
Poisonous Plants ◽  
Degrading Bacteria ◽  
Rrna Gene Sequencing ◽  
Orbital Shaker

The objective of this paper was to report the isolation of two fluoroacetate degrading bacteria from the rumen of goats. The animals were adult goats, males, crossbred, with rumen fistula, fed with hay, and native pasture. The rumen fluid was obtained through the rumen fistula and immediately was inoculated 100 μL in mineral medium added with 20 mmol L−1sodium fluoroacetate (SF), incubated at 39°C in an orbital shaker.Pseudomonas fluorescens(strain DSM 8341) was used as positive control for fluoroacetate dehalogenase activity. Two isolates were identified by 16S rRNA gene sequencing asPigmentiphaga kullae(ECPB08) andAncylobacter dichloromethanicus(ECPB09). These bacteria degraded sodium fluoroacetate, releasing 20 mmol L−1of fluoride ion after 32 hours of incubation in Brunner medium containing 20 mmol L−1of SF. There are no previous reports of fluoroacetate dehalogenase activity forP. kullaeandA. dichloromethanicus. Control measures to prevent plant intoxication, including use of fences, herbicides, or other methods of eliminating poisonous plants, have been unsuccessful to avoid poisoning by fluoroacetate containing plants in Brazil. In this way,P. kullaeandA. dichloromethanicusmay be used to colonize the rumen of susceptible animals to avoid intoxication by fluoroacetate containing plants.

scholarly journals Isolation and identification of phylloplane and endophytic fungi from Sapindus mukorossi

2020 ◽  
Vol 26 (2) ◽  
Author(s):  
B.D. Varpe
Keyword(s):  
Endophytic Fungi ◽  
Terrestrial Ecosystem ◽  
Fungal Species ◽  
Penicillium Expansum ◽  
Isolation And Identification ◽  
Epicoccum Nigrum ◽  
Candida Sp ◽  
Fusarium Sp ◽  
The Rich ◽  
High Level

Phylloplane biodiversity and endophytic fungi is considered one of the rich origins of novel biological activity compounds and high-level structural variation on the leaf surface. Plant leaves surface is a diverse terrestrial ecosystem, including filamentous fungi. This study aims to study the isolation and enumeration of Sapindus mukorossi phylloplane and endophytic fungal diversity. The Sapindus mukorossi isolated 14 fungal species from 9 genera of phylloplane and endophytic fungi. Cladosporium herbarum, Penicillium expansum, Fusarium oxysporum, Fusarium sp., Alternaria alternate, Collectotrichum orbiculare, Torulla herbarium, Epicoccum nigrum and Candida sp. as a phylloplane fungi. Aspergillus niger, A. flavus, Epicoccum nigrum. Penicillum digitatum, Penicillum sp. were identified as endophytic fungi.

Sign in / Sign up

Export Citation Format

Share Document