scholarly journals Population Genetic Structure of Asclepias Tuberosa In Northwest Iowa: A Comparison Within and Between Remnant Prairies and Commercially Available Seed

2015 ◽  
Vol 122 (1-4) ◽  
pp. 1-6
Author(s):  
Jeffrey T Ploegstra ◽  
Brittany de Ruyter ◽  
Tony Jelsma
Keyword(s):  
Genetic Diversity ◽  
Genetic Structure ◽  
Tallgrass Prairie ◽  
Microsatellite Analysis ◽  
Outbreeding Depression ◽  
Moderate Degree ◽  
Asclepias Syriaca ◽  
Minimal Impact ◽  
Low Degree ◽  
Degree Of Differentiation

Isolated in scattered remnants, less than 0.1% of Iowa's original tallgrass prairie remains. The small populations remaining are at risk for reduced genetic diversity, inbreeding depression, and outbreeding depression. In light of these concerns, we used microsatellite analysis to assess the genetic structure of butterfly milkweed (Asclepias tuberosa) populations on prairie remnants in northwest Iowa. We compared remnant populations with a restoration population at Dordt College in Sioux Center, Iowa, and with an Oklahoma seed source. Microsatellites identified for use in common milkweed (Asclepias syriaca) had sufficient polymorphism information content (PIC) across the butterfly milkweed (A. tuberosa) populations sampled (mean PIC = 0.624). The FIS values indicated a lack of inbreeding (mean FIS = −0.1455) even in the commercially expanded seed. The pairwise FST values showed a low degree of differentiation among the remnants (mean FST = 0.0453) but a moderate degree (mean FST = 0.105) of differentiation when comparing the remnants to the Dordt restoration or to seed from Oklahoma. Despite massive loss and fragmentation of the tallgrass prairie, our microsatellite analysis revealed no evidence of inbreeding in A. tuberosa. However, evidence of genetic differentiation suggests that effort should be made to preserve the diversity still present. Seed expansion efforts appear to have had minimal impact on overall genetic diversity, although the diversity in particular selectable traits may be reduced. The differences between the genetics of the propagated seed at the Dordt restoration and the Oklahoma seed when compared to native remnants support the usefulness of source-identified seed.

scholarly journals Microsatellite genotyping from faeces of Lontra longicaudis from southern Brazil

2009 ◽  
Vol 99 (1) ◽  
pp. 5-11 ◽  
Author(s):  
Laura I. Weber ◽  
Cintia G. Hildebrand ◽  
Anderson Ferreira ◽  
Gustavo Pedarassi ◽  
José A. Levy ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Conservation Status ◽  
Significant Degree ◽  
Southern Brazil ◽  
High Genetic Diversity ◽  
Low Degree ◽  
Faecal Samples ◽  
High Level ◽  
Degree Of Differentiation ◽  
Lontra Longicaudis

A genetic study of the neotropical river otter Lontra longicaudis (Olfers, 1818), which has an unknown conservation status, was carried out at the Taim Ecological Station and the margins of the Vargas stream, Rio Grande do Sul, southern Brazil. Faecal samples were collected, and DNA was extracted using a silica-guanidine method. Five microsatellite loci were amplified using PCR with heterologous primers previously described for Lutra lutra (Linnaeus, 1758). Sixteen faecal samples out of 29 from Taim and 11 out of 14 from Vargas stream margins contained enough DNA for genetic analysis. A total of 49 different alleles were found at both localities, from which 18 were exclusively found in individuals from Taim and 17 were exclusives from Vargas individuals. The most common allele was the same at both locations for three loci (Lut715, Lut733, and Lut818). A high level of genetic diversity was found at both sites (NeTaim=4.1, HoTaim=0.299, HeTaim=0.681; NeVargas=4.9, HoVargas=0.355, HeVargas=0.724), being higher at the Vargas stream site. A high and significant level of heterozygote deficiency was observed at most loci according to the χ2 test. The homogeneity χ2 test (P<0.001) showed that there were significant differences in the allele frequencies between the two locations. Genotyping for more than one locus was possible in 81.5% of samples, from which only 37% were possible to genotype for more than three loci. A low degree of relatedness was found among individuals from Taim (R=0.055±0.310), but an even lower value of relatedness was found at the Vargas site (R= -0.285±0.440). The significant degree of differentiation (I=0.890; F ST=0.059) found between Taim and Vargas individuals suggests that there is more than one population of otters in the southern extreme of Brazil, which probably are associated with the water body systems found in this region, the Mirim and the Caiuvá/Flores/Mangueira Lagoons. The high genetic diversity and low relatedness found at the Vargas stream, lead us to believe that the Vargas stream may be acting as a corridor between these water bodies for otter dispersion.

scholarly journals Study on the Genetic Structure Based on Geographic Populations of the Endangered Tree Species: Liriodendron chinense

Forests ◽  
2021 ◽  
Vol 12 (7) ◽  
pp. 917
Author(s):  
Peng-Yan Zhou ◽  
Li-Xing Hui ◽  
Shu-Jing Huang ◽  
Zhou-Xian Ni ◽  
Fa-Xin Yu ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Genetic Structure ◽  
Natural Populations ◽  
Systematic Research ◽  
Endangered Tree ◽  
Endangered Tree Species ◽  
Expected Heterozygosity ◽  
Liriodendron Chinense ◽  
Geographic Populations ◽  
Degree Of Differentiation

Liriodendron chinense (Hemsley) Sargent is a Class II protected plant in China as natural populations are on the verge of extinction. There is still a lack of systematic research on the genetic resources of its geographic populations. In this study, we used 20 pairs of SSR markers with high polymorphism to analyze a total of 808 L. chinense samples from 22 regions, and 63 Liriodendron tulipifera Linn samples from 2 regions were used as a comparison group. The results revealed a total of 78 alleles in L. chinense, and the average expected heterozygosity (He) was 0.558, showing a low level of genetic diversity. The degree of differentiation of L. chinense was high, with the differentiation coefficient (Fst) as high as 0.302, which is related to the low gene flow (Nm = 0.578). Based on the genetic structure, principal coordinate analysis (PCoA) and phylogenetic analysis of 24 Liriodendron spp. populations, L. chinense and L. tulipifera had obvious differentiation, while the differentiation between L. chinense geographic populations was very large and irregular. Inbreeding appears within the geographic populations, and the level of genetic diversity is very low. In order to protect the genetic diversity of L. chinense, in addition to protecting the existing population as much as possible, artificial cultivation should introduce materials from multiple populations.

scholarly journals GENETIC STRUCTURE AND DIFFERENTIATION OF SIBERIAN FIR POPULATIONS LOCATED AT VARIED ELEVATIONS IN WESTERN SAYAN

2005 ◽  
Vol 3 (2) ◽  
pp. 22-27
Author(s):  
Albina Y Larionova ◽  
Aleksandr K Ekart
Keyword(s):  
Genetic Diversity ◽  
Genetic Structure ◽  
Elevation Gradient ◽  
High Mountain ◽  
Allozyme Diversity ◽  
Siberian Fir ◽  
Abies Sibirica ◽  
Western Sayan ◽  
Degree Of Differentiation ◽  
Diversity Structure

On the basis of analysis for 19 genes coding allozyme diversity of 11 enzymes (IDH, NDH, MDH, SKDH, FE, GDH, PGM, SOD, GOT, LAP, PGI) the data about genetic diversity, structure and degree of differentiation of Siberian fir populations (Abies sibirica Ledeb) located at varied elevations in Western Sayan (400 m, 1000 m and 1500 m) were obtained. It was established that the most significant differences at genetic structure are observed between distant from each other along an elevation gradient low mountain and high mountain populations.

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