scholarly journals Molecular genetic identification of arbuscular mycorrhizal fungi

2018 ◽  
Vol 16 (2) ◽  
pp. 11-23 ◽  
Author(s):  
Andrey P. Yurkov ◽  
Alexey A. Kryukov ◽  
Anastasia O. Gorbunova ◽  
Andrey P. Kojemyakov ◽  
Galina V. Stepanova ◽  
...  
Keyword(s):  
Mycorrhizal Fungi ◽  
Molecular Genetic ◽  
Arbuscular Mycorrhizal ◽  
Am Fungi ◽  
Genetic Identification ◽  
Specific Marker ◽  
Selection Of Species ◽  
Species Specific ◽  
Molecular Genetic Identification ◽  
Selection Of

Arbuscular mycorrhiza (AM) is a widespread symbiosis formed by most land plants with fungi from Glomeromycotina subdivision. The main problem in study of AM fungi is the complication in identification, associated with high intra- and interspecific genetic polymorphism, as well as obligate status of AM fungi in relation to host plant. The methodology for AM fungi identification is constantly undergoing major changes. In the review the selection of optimal methods of molecular genetic identification for AM fungi is carried out. The sample preparation, selection of species-specific marker DNA fragments and primers design, amplification including nested PCR are considered. The prospects for cloning and next generation sequencing for AM fungi identification are analyzed and substantiated.

scholarly journals Isolation and Screening of Mycorrhizal Fungi from Citrus Nurseries and Orchards and Inoculation Studies

HortScience ◽  
1996 ◽  
Vol 31 (3) ◽  
pp. 366-369 ◽  
Author(s):  
Amelia Camprubí ◽  
Cinta Calvet
Keyword(s):  
Mycorrhizal Fungi ◽  
Arbuscular Mycorrhizal ◽  
Am Fungi ◽  
Poncirus Trifoliata ◽  
Plant Production ◽  
Growth Enhancement ◽  
Mycorrhizal Dependency ◽  
Cleopatra Mandarin ◽  
Swingle Citrumelo ◽  
Selection Of

The selection of the most effective arbuscular mycorrhizal (AM) fungi for growth enhancement of citrus cultivars used as rootstocks was the first step toward development of an AM inoculation system in citrus nurseries in Spain. AM fungi were isolated from citrus nurseries and orchards in the major citrus-growing areas of eastern Spain. The most common AM fungi found in citrus soils belonged to Glomus species, and G. mosseae (Nicol. & Gerd.) Gerdemann & Trappe and G. intraradices Schenck & Smith were the AM fungi most frequently associated with citrus roots. The most effective fungus for growth enhancement of citrus rootstocks was G. intraradices. Significant differences in mycorrhizal dependency among rootstocks were confirmed. Sour orange (Citrus aurantium L.) and Cleopatra mandarin (C. reshni L.) were more dependent than Troyer citrange [C. sinensis (L.) Obs. × Poncirus trifoliata (L.) Raf.] and Swingle citrumelo (C. paradisi Macf. × P. trifoliata). Moreover, several inoculation systems for plant production were evaluated for their effectiveness in promoting root colonization of the rootstock cultivars.

scholarly journals CONSTRUCTION OF SPECIES-SPECIFIC PRIMERS FOR MOLECULAR-GENETIC IDENTIFICATION OF PORCINE TESCHOVIRUSES AND ETEROVIRUSES A AND B

2010 ◽  
Vol 10 ◽  
pp. 156-165
Author(s):  
A.M. Golovko ◽  
S.V. Derevyanko ◽  
T.O. Bova ◽  
V.I. Soroka ◽  
V.V. Katsymon
Keyword(s):  
Diagnostic Test ◽  
Molecular Genetic ◽  
International Classification ◽  
Genetic Identification ◽  
Specific Primers ◽  
Test Systems ◽  
Porcine Enterovirus ◽  
Porcine Teschovirus ◽  
Species Specific ◽  
Molecular Genetic Identification

The species-specific primers for identification of taxonomic positions of strains of Porcine Teschovirus, Porcine Enterovirus A and Porcine Enterovirus B kinds were developed. The reclassification of 10 strains of Porcine Enterovirus isolated in Ukraine was performed. In conformity to the international classification they were referred to the Тeschovirus genus of Porcine Teschovirus specie. Performed investigations had created a basis for elaboration of domestic moleculargenetic diagnostic test systems

Molecular genetic identification of isolates of the hepatitis A virus (HAV) from monkeys at Adler Primate Center

2018 ◽  
Vol 47 (2) ◽  
pp. 87-92 ◽  
Author(s):  
Dmitriy I. Dogadov ◽  
Lydia I. Korzaya ◽  
Anastasia A. Karlsen ◽  
Karen K. Kyuregyan
Keyword(s):  
Hepatitis A ◽  
Hepatitis A Virus ◽  
Molecular Genetic ◽  
Genetic Identification ◽  
Molecular Genetic Identification

scholarly journals Use of the Signature Fatty Acid 16:1ω5 as a Tool to Determine the Distribution of Arbuscular Mycorrhizal Fungi in Soil

2012 ◽  
Vol 2012 ◽  
pp. 1-8 ◽  
Author(s):  
Christopher Ngosong ◽  
Elke Gabriel ◽  
Liliane Ruess
Keyword(s):  
Fatty Acid ◽  
Mycorrhizal Fungi ◽  
Plant Root ◽  
Background Level ◽  
Arbuscular Mycorrhizal ◽  
Am Fungi ◽  
Biomass Estimation ◽  
Lipid Fatty Acid ◽  
Neutral Lipid Fatty Acid ◽  
Root Symbionts

Biomass estimation of arbuscular mycorrhiza (AM) fungi, widespread plant root symbionts, commonly employs lipid biomarkers, predominantly the fatty acid 16:1ω5. We briefly reviewed the application of this signature fatty acid, followed by a case study comparing biochemical markers with microscopic techniques in an arable soil following a change to AM non-host plants after 27 years of continuous host crops, that is, two successive cropping seasons with wheat followed by amaranth. After switching to the non-host amaranth, spore biomass estimated by the neutral lipid fatty acid (NLFA) 16:1ω5 decreased to almost nil, whereas microscopic spore counts decreased by about 50% only. In contrast, AM hyphal biomass assessed by the phospholipid (PLFA) 16:1ω5 was greater under amaranth than wheat. The application of PLFA 16:1ω5 as biomarker was hampered by background level derived from bacteria, and further enhanced by its incorporation from degrading spores used as microbial resource. Meanwhile, biochemical and morphological assessments showed negative correlation for spores and none for hyphal biomass. In conclusion, the NLFA 16:1ω5 appears to be a feasible indicator for AM fungi of the Glomales group in the complex field soils, whereas the use of PLFA 16:1ω5 for hyphae is unsuitable and should be restricted to controlled laboratory studies.

scholarly journals Soil Fungal Resources in Annual Cropping Systems and Their Potential for Management

2014 ◽  
Vol 2014 ◽  
pp. 1-15 ◽  
Author(s):  
Walid Ellouze ◽  
Ahmad Esmaeili Taheri ◽  
Luke D. Bainard ◽  
Chao Yang ◽  
Navid Bazghaleh ◽  
...  
Keyword(s):  
Mycorrhizal Fungi ◽  
Soil Fungi ◽  
Cropping Systems ◽  
Arbuscular Mycorrhizal ◽  
Soil Biodiversity ◽  
Agricultural Ecosystems ◽  
Agronomic Practices ◽  
Rhizosphere Fungi ◽  
Fungal Organisms ◽  
Selection Of

Soil fungi are a critical component of agroecosystems and provide ecological services that impact the production of food and bioproducts. Effective management of fungal resources is essential to optimize the productivity and sustainability of agricultural ecosystems. In this review, we (i) highlight the functional groups of fungi that play key roles in agricultural ecosystems, (ii) examine the influence of agronomic practices on these fungi, and (iii) propose ways to improve the management and contribution of soil fungi to annual cropping systems. Many of these key soil fungal organisms (i.e., arbuscular mycorrhizal fungi and fungal root endophytes) interact directly with plants and are determinants of the efficiency of agroecosystems. In turn, plants largely control rhizosphere fungi through the production of carbon and energy rich compounds and of bioactive phytochemicals, making them a powerful tool for the management of soil fungal diversity in agriculture. The use of crop rotations and selection of optimal plant genotypes can be used to improve soil biodiversity and promote beneficial soil fungi. In addition, other agronomic practices (e.g., no-till, microbial inoculants, and biochemical amendments) can be used to enhance the effect of beneficial fungi and increase the health and productivity of cultivated soils.

scholarly journals Response of Arbuscular Mycorrhizal Fungi to Simulated Climate Changes by Reciprocal Translocation in Tibetan Plateau

2015 ◽  
Vol 43 (2) ◽  
pp. 488-493
Author(s):  
Zhaoyong SHI ◽  
Xubin YIN ◽  
Bede MICKAN ◽  
Fayuan WANG ◽  
Ying ZHANG ◽  
...  
Keyword(s):  
Tibetan Plateau ◽  
Arbuscular Mycorrhizal Fungi ◽  
Reciprocal Translocation ◽  
Mycorrhizal Fungi ◽  
Climate Changes ◽  
Arbuscular Mycorrhizal ◽  
Am Fungi ◽  
Spore Density ◽  
The Tibetan Plateau ◽  
Colonization Frequency

Arbuscular mycorrhiza (AM) fungi are considered as an important factor in predicting plants and ecosystem responses to climate changes on a global scale. The Tibetan Plateau is the highest region on Earth with abundant natural resources and one of the most sensitive region to climate changes. To evaluate the complex response of arbuscular mycorrhizal fungi colonization and spore density to climate changes, a reciprocal translocation experiment was employed in Tibetan Plateau. The reciprocal translocation of quadrats to AM colonization and spore density were dynamic. Mycorrhizal colonization frequency presented contrary changed trend with elevations of quadrat translocation. Colonization frequency reduced or increased in majority quadrats translocated from low to high or from high to low elevation. Responses of colonization intensity to translocation of quadrats were more sensitive than colonization frequency. Arbuscular colonization showed inconsistent trend in increased or decreased quadrat. Vesicle colonization decreased with changed of quadrat from low to high elevations. However, no significant trend was observed. Although spore density was dynamic with signs of decreasing or increasing in translocated quadrats, the majority enhanced and declined respectively in descent and ascent quadrat treatments. It is crucial to understand the interactions between AM fungi and prairie grasses to accurately predict effects of climate change on these diverse and sensitive ecosystems. This study provided an opportunity for understanding the effect of climate changes on AM fungi.

scholarly journals Selecting of Polymorphic Loci of Genome for Identification of Populations of Pinus sylvestris L. on East-Europe Plain

2019 ◽  
Vol 5 (5) ◽  
pp. 25-30
Author(s):  
Ya. Prishnivskaya ◽  
E. Nassonova ◽  
Yu. Vasileva ◽  
S. Boronnikova
Keyword(s):  
Pinus Sylvestris ◽  
Molecular Genetic ◽  
Genetic Identification ◽  
East European Plain ◽  
Data Bases ◽  
East Europe ◽  
Polymorphic Loci ◽  
East European ◽  
Molecular Genetic Identification

10 pairs of primers from 8 related Pinus sylvestris L. populations collected on East-European plain to 10 genes and 4 primer’s pairs to 4 loci of uncoding clDNA regions. 2 loci of uncoding clDNA regions (psbA-trnH, trnL-trnF) were selected from tested 14 primer’s pairs. These two loci are most polymorphic and has homologous consistencies in data bases. Therefore, these loci is recommended for molecular–genetic identification of related Pinus sylvestris L. populations on East–European plain.

scholarly journals Synergistic community responses of plants and arbuscular mycorrhizal fungi to extreme droughts in a cold-temperate grassland

2020 ◽  
Author(s):  
Wei Fu ◽  
Baodong Chen ◽  
Matthias Rillig ◽  
Wang Ma ◽  
Chong Xu ◽  
...  
Keyword(s):  
Fungal Community ◽  
Mycorrhizal Fungi ◽  
Community Dynamics ◽  
Environmental Changes ◽  
Environmental Filtering ◽  
Climate Extremes ◽  
Arbuscular Mycorrhizal ◽  
Am Fungi ◽  
Temperate Grassland ◽  
Community Responses

Mutualistic associations between plants and arbuscular mycorrhizal (AM) fungi may have profound influences on their response to climate changes. Existing theories evaluate the effects of interdependency and environmental filtering on plant-AM fungal community dynamics separately; however, abrupt environmental changes such as climate extremes can provoke duo-impacts on the metacommunity simultaneously. Here, we experimentally tested the relevance of plant and AM fungal community responses to extreme drought (chronic or intense) in a cold temperate grassland. Irrespective of drought intensities, plant species richness and productivity responses were significantly and positively correlated with AM fungal richness and also served as best predictors of AM fungal community shifts. Notably, the robustness of this community synergism increased with drought intensity, likely reflecting increased community interdependence. Network analysis showed a key role of Glomerales in AM fungal interaction with plants, suggesting specific plant-AM fungal pairing. Thus, community interdependence may underpin climate change impact on plant-AM fungal diversity patterns in grasslands.

scholarly journals The Synergy of Arbuscular Mycorrhizal Fungi and Exogenous Abscisic Acid Benefits Robinia pseudoacacia L. Growth through Altering the Distribution of Zn and Endogenous Abscisic Acid

2021 ◽  
Vol 7 (8) ◽  
pp. 671
Author(s):  
Xiao Lou ◽  
Xiangyu Zhang ◽  
Yu Zhang ◽  
Ming Tang
Keyword(s):  
Abscisic Acid ◽  
Mycorrhizal Fungi ◽  
Black Locust ◽  
Robinia Pseudoacacia ◽  
Arbuscular Mycorrhizal ◽  
Am Fungi ◽  
Am Symbiosis ◽  
Antioxidant Defense Systems ◽  
Robinia Pseudoacacia L ◽  
Zn Stress

The simultaneous effects of arbuscular mycorrhizal (AM) fungi and abscisic acid (ABA) on the tolerance of plants to heavy metal (HM) remain unclear. A pot experiment was carried out to clarify the effects of simultaneous applications of AM fungi and ABA on plant growth, Zn accumulation, endogenous ABA contents, proline metabolism, and the oxidative injury of black locust (Robinia pseudoacacia L.) exposed to excess Zn stress. The results suggested that exogenously applied ABA positively enhanced AM colonization, and that the growth of plants only with AM fungi was improved by ABA application. Under Zn stress, AM inoculation and ABA application increased the ABA content in the root/leaf (increased by 48–172% and 92%, respectively) and Zn content in the root/shoot (increased by 63–152% and 61%, respectively) in AM plants, but no similar trends were observed in NM plants. Additionally, exogenous ABA addition increased the proline contents of NM roots concomitantly with the activities of the related synthases, whereas it reduced the proline contents and the activity of Δ1-pyrroline-5-carboxylate synthetase in AM roots. Under Zn stress, AM inoculation and ABA application decreased H2O2 contents and the production rate of O2, to varying degrees. Furthermore, in the roots exposed to Zn stress, AM inoculation augmented the activities of SOD, CAT, POD and APX, and exogenously applied ABA increased the activities of SOD and POD. Overall, AM inoculation combined with ABA application might be beneficial to the survival of black locust under Zn stress by improving AM symbiosis, inhibiting the transport of Zn from the roots to the shoots, increasing the distribution of ABA in roots, and stimulating antioxidant defense systems.

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