Cell-type-specific proteome and interactome: using HIV-1 Tat as a test case

2009 ◽  
Vol 6 (5) ◽  
pp. 515-526 ◽  
Author(s):  
Rachel Van Duyne ◽  
Kylene Kehn-Hall ◽  
Lawrence Carpio ◽  
Fatah Kashanchi
Keyword(s):  
Author(s):  
Jiehua Zhou ◽  
Haitang Li ◽  
Shirley Li ◽  
John Zaia ◽  
John Rossi

Retrovirology ◽  
2012 ◽  
Vol 9 (1) ◽  
pp. 97 ◽  
Author(s):  
Tzanko S Stantchev ◽  
Mark Paciga ◽  
Carla R Lankford ◽  
Franziska Schwartzkopff ◽  
Christopher C Broder ◽  
...  

2001 ◽  
Vol 75 (17) ◽  
pp. 8063-8073 ◽  
Author(s):  
Oliver T. Keppler ◽  
Wesley Yonemoto ◽  
Frank J. Welte ◽  
Kathryn S. Patton ◽  
Demetris Iacovides ◽  
...  

ABSTRACT Progress in developing a small animal model of human immunodeficiency virus type 1 (HIV-1) disease would greatly facilitate studies of transmission, pathogenesis, host immune responses, and antiviral strategies. In this study, we have explored the potential of rats as a susceptible host. In a single replication cycle, rat cell lines Rat2 and Nb2 produced infectious virus at levels 10- to 60-fold lower than those produced by human cells. Rat-derived cells supported substantial levels of early HIV-1 gene expression, which was further enhanced by overexpression of human cyclin T1. Rat cells displayed quantitative, qualitative, and cell-type-specific limitations in the late phase of the HIV-1 replication cycle including relative expression levels of HIV-1 Gag proteins, intracellular Gag processing, and viral egress. Nb2 cells were rendered permissive to HIV-1 R5 viruses by coexpression of human CD4 and CCR5, indicating that the major restriction on HIV-1 replication was at the level of cellular entry. We also found that primary rat lymphocytes, macrophages, and microglia expressed considerable levels of early HIV-1 gene products following infection with pseudotyped HIV-1. Importantly, primary rat macrophages and microglia, but not lymphocytes, also expressed substantial levels of HIV-1 p24 CA and produced infectious virions. Collectively, these results identify the rat as a promising candidate for a transgenic small animal model of HIV-1 infection and highlight pertinent cell-type-specific restrictions that are features of this species.


Methods ◽  
2011 ◽  
Vol 54 (2) ◽  
pp. 284-294 ◽  
Author(s):  
Jiehua Zhou ◽  
Yi Shu ◽  
Peixuan Guo ◽  
David D. Smith ◽  
John J. Rossi

2005 ◽  
Vol 79 (3) ◽  
pp. 1930-1933 ◽  
Author(s):  
Xavier Carnec ◽  
Lan Quan ◽  
William C. Olson ◽  
Uriel Hazan ◽  
Tatjana Dragic

ABSTRACT CXCR4 is one of two physiologically relevant human immunodeficiency type 1 (HIV-1) entry coreceptors. Studies of CXCR4 mutants have not clearly identified the determinants of coreceptor function and specificity. We therefore used a panel of monoclonal antibodies to further elucidate CXCR4 expression, structure, and function. Our findings show the existence of conformational subpopulations of CXCR4 that are in equilibrium on the cell surface but are not cell type specific as previously reported. HIV-1 X4 isolates can interact with multiple CXCR4 conformations in order to gain entry into target cells.


1993 ◽  
Vol 9 (7) ◽  
pp. 669-675 ◽  
Author(s):  
HANNEKE SCHUITEMAKER ◽  
MARTIJN GROENINK ◽  
LINDE MEYAARD ◽  
NEELTJE A. KOOTSTRA ◽  
RON A. M. FOUCHIER ◽  
...  

AIDS ◽  
2015 ◽  
Vol 29 (9) ◽  
pp. 1003-1014 ◽  
Author(s):  
Renée M. van der Sluis ◽  
Toni M.M. van Capel ◽  
Dave Speijer ◽  
Rogier W. Sanders ◽  
Ben Berkhout ◽  
...  

2019 ◽  
Vol 35 (3) ◽  
pp. 225-226
Author(s):  
M. Gorbacheva ◽  
A. Valyaeva ◽  
D. Potashnikova ◽  
E. Arifulin ◽  
Y. Vassetzky ◽  
...  

2019 ◽  
Author(s):  
Jiyeon Choi ◽  
Tongwu Zhang ◽  
Andrew Vu ◽  
Julien Ablain ◽  
Matthew M Makowski ◽  
...  

AbstractGenome-wide association studies (GWAS) have identified ∼20 melanoma susceptibility loci. To identify susceptibility genes and variants simultaneously from multiple GWAS loci, we integrated massively-parallel reporter assays (MPRA) with cell type-specific epigenomic data as well as melanocyte-specific expression quantitative trait loci (eQTL) profiling. Starting from 16 melanoma loci, we selected 832 variants overlapping active regions of chromatin in cells of melanocytic lineage and identified 39 candidate functional variants displaying allelic transcriptional activity by MPRA. For four of these loci, we further identified four colocalizing melanocytecis-eQTL genes (CTSS,CASP8,MX2, andMAFF) matching the allelic activity of MPRA functional variants. Among these, we further characterized the locus encompassing the HIV-1 restriction gene,MX2, on chromosome band Chr21q22.3 and validated a functional variant, rs398206, among multiple high LD variants. rs398206 mediates allelic transcriptional activity via binding of the transcription factor, YY1. This allelic transcriptional regulation is consistent with a significantcis-eQTL ofMX2in primary human melanocytes, where the melanoma risk-associated A allele of rs398206 is correlated with higherMX2levels. Melanocyte-specific transgenic expression of humanMX2in a zebrafish model demonstrated accelerated melanoma formation in aBRAFV600Ebackground. Thus, using an efficient scalable approach to streamline GWAS follow-up functional studies, we identified multiple candidate melanoma susceptibility genes and variants, and uncovered a pleiotropic function ofMX2in melanoma susceptibility.


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