scholarly journals Yellow Rust (Puccinia striiformis): a Serious Threat to Wheat Production Worldwide

2018 ◽  
Vol 10 (3) ◽  
pp. 410-423 ◽  
Author(s):  
Siham KHANFRI ◽  
Mohammed BOULIF ◽  
Rachid LAHLALI
Keyword(s):  
Life Cycle ◽  
Stripe Rust ◽  
Puccinia Striiformis ◽  
Yellow Rust ◽  
Wheat Crop ◽  
Long Distance ◽  
Susceptible Host ◽  
Center Of Origin ◽  
Resistant Varieties ◽  
The World

Wheat (Triticum sp. L.), as one of the first domesticated food crops, is the basic staple food for a large segment of population around the world. The crop though is susceptible to many fungal pathogens. Stripe rust is an important airborne disease caused by Puccinia striiformis (Pst) and is widespread wherever wheat is cultivated throughout the world, in temperate-cool and wet environments. The causal fungus of stripe rust or yellow rust is an obligate parasite that requires another living host to complete its life cycle. Pst includes five types of spores in the life cycle on two distinct hosts. Stripe rust is distinguished from other rusts by the dusty yellow lesions that grow systemically in the form of streaks between veins and on leaf sheaths. The importance and occurrence of stripe rust disease varies in cultivated wheat, depending on environmental conditions (moisture, temperature, and wind), inoculum levels and susceptible host varieties. Transcaucasia was previously thought to be the center of origin for the pathogen. However, new findings further underlined Himalayan and near-Himalayan regions as center of diversity and a more tenable center of origin for P. striiformis. Long-distance dispersal of stripe rust pathogen in the air and occasionally by human activities enables Pst to spread to new geographical areas. This disease affects quality and yield of wheat crop. Early seeding, foliar fungicide application and cultivation of resistant varieties are the main strategies for its control. The emergence of new races of Pst with high epidemic potential which can adapt to warmer temperatures has expanded virulence profiles. Subsequently, races are more aggressive than those previously characterized. These findings emphasize the need for more breeding efforts of resistant varieties and reinforcement of other management practices to prevent and overcome stripe rust epidemic around the world.

scholarly journals Race Dynamics, Diversity, and Virulence Evolution in Puccinia striiformis f. sp. tritici, the Causal Agent of Wheat Stripe Rust in China from 2003 to 2007

Plant Disease ◽  
2009 ◽  
Vol 93 (11) ◽  
pp. 1093-1101 ◽  
Author(s):  
W. Q. Chen ◽  
L. R. Wu ◽  
T. G. Liu ◽  
S. C. Xu ◽  
S. L. Jin ◽  
...  
Keyword(s):  
Stripe Rust ◽  
Large Scale ◽  
Puccinia Striiformis ◽  
Yellow Rust ◽  
Rust Fungus ◽  
Long Distance ◽  
Center Of Origin ◽  
Virulence Evolution ◽  
Large Scale Cultivation ◽  
Pathogen Populations

Stripe (or yellow) rust caused by Puccinia striiformis f. sp. tritici is the most destructive foliar disease of wheat in China. The pathogen populations were analyzed for virulence evolution, complexity, phenotypic dynamics, and diversity on temporal and spatial bases. A total of 41 races were identified and characterized from 4,714 stripe rust isolates collected during 2003 through 2007 from wheat growing areas in 15 provinces in China. The races were based on avirulence/virulence patterns to 19 differential host genotypes. Chinese stripe rust population exhibited high diversity with a complex virulence structure. Comparisons using the relative Shannon's index indicated that some differences in the richness and evenness of races were present in pathogen populations within years and between regions despite a national tendency to reduced diversity over time. A noticeably increased frequency of race CYR33 (Chinese yellow rust 33) with virulence for YrSu was the major virulence change recorded in this study compared to the results on an annual basis. Isolates of Puccinia striiformis f. sp. tritici from different regions showed differences in the composition of races, distribution frequency, and diversity. The uneven distribution of major races and comparatively greater diversity in the Northwest and Southwest regions than that in the Huang-Huai-Hai region suggest that long-distance migrations of the pathogen occur from one or more over-summering areas eastward into over-wintering areas. This supports the hypothesis that southern Gansu and northwestern Sichuan comprises a “center of origin for virulence”. Mutation of virulence or avirulence for host resistance in the stripe rust fungus may be the basic cause of the occurrence of new virulent types. The subsequent dominance of certain races will vary with parasitic fitness and the opportunities to be selected through large-scale cultivation of varieties with matching resistance genes. Implications of the center of origin for virulence variation and diversity in the pathogen population and an alternative strategy for limiting virulence evolution are discussed.

Distribution of Puccinia striiformis f. sp. tritici races and virulence in wheat growing regions of Kenya from 1970 TO 2014

Plant Disease ◽  
2021 ◽  
Author(s):  
Mercy Wamalwa ◽  
Ruth Wanyera ◽  
Julian Rodriguez-Algaba ◽  
Lesley Boyd ◽  
James Owuoche ◽  
...  
Keyword(s):  
Stripe Rust ◽  
Fungal Pathogen ◽  
Puccinia Striiformis ◽  
Yellow Rust ◽  
Stripe Rust Resistance ◽  
Scar Markers ◽  
Seedling Resistance ◽  
Sequence Characterized Amplified Region ◽  
Triticum Spp ◽  
Virulence Diversity

Stripe rust, caused by the fungal pathogen Puccinia striiformis f. sp. tritici (Pst), is a major threat to wheat (Triticum spp.) production worldwide. The objective of this study was to determine the virulence of Pst races prevalent in the main wheat growing regions of Kenya, which includes Mt. Kenya, Eastern Kenya, and the Rift Valley (Central, Southern, and Northern Rift). Fifty Pst isolates collected from 1970 to 1992 and from 2009 to 2014 were virulence phenotyped using stripe rust differential sets, and 45 isolates were genotyped with sequence characterized amplified region (SCAR) markers to differentiate among the isolates and identify aggressive strains PstS1 and PstS2. Virulence corresponding to stripe rust resistance genes Yr1, Yr2, Yr3, Yr6, Yr7, Yr8, Yr9, Yr17, Yr25, Yr27 and the seedling resistance in genotype Avocet S were detected. Ten races were detected in the Pst samples obtained from 1970 to 1992, and three additional races were detected from 2009 to 2014, with a single race being detected in both periods. The SCAR markers detected both Pst1 and Pst2 strains in the collection. Increasing Pst virulence was found in the Kenyan Pst population, and that diverse Pst race groups dominated different wheat growing regions. Moreover, recent Pst races in east Africa indicated possible migration of some race groups into Kenya from other regions. This study is important in understanding Pst evolution and virulence diversity and useful in breeding wheat cultivars with effective resistance to stripe rust. Keywords: pathogenicity, Puccinia f. sp. tritici stripe (yellow) rust, Triticum aestivum

Effect of post-inoculation temperature and light intensity on expression of resistance to stripe rust in some Australian wheat cultivars

1994 ◽  
Vol 45 (7) ◽  
pp. 1379 ◽  
Author(s):  
GJ Ash ◽  
RG Rees
Keyword(s):  
Stripe Rust ◽  
Puccinia Striiformis ◽  
Infection Type ◽  
High Light ◽  
Post Inoculation ◽  
Wheat Cultivars ◽  
Susceptible Host ◽  
Light Intensities ◽  
Australian Wheat ◽  
Infection Types

Temperature sensitive resistance to stripe rust in selected Australian wheat cultivars was found to be most strongly expressed at a constant post-inoculation temperature of l9�C and at high light intensities. At 25�C the infection type on the susceptible host was reduced, indicating incompatability, while at the lower temperature of 13�C all cultivars were susceptible to the rust. At low light intensities there was a movement towards low infection types in cultivars possessing this resistance even at low temperatures. This made it essential to use high light intensities to differentiate this resistance to stripe rust. The host-pathogen interaction leading to the low infection types became irreversible after 6 to 7 days' exposure to the higher temperatures. As well as affecting disease progress towards the end of the growing season in the warmer areas of the wheat belt, this resistance could have a marked effect on the ability of Puccinia striiformis fsp. tritici to oversummer in the Australian wheat growing areas.

scholarly journals Evidence for Increased Aggressiveness in a Recent Widespread Strain of Puccinia striiformis f. sp. tritici Causing Stripe Rust of Wheat

2009 ◽  
Vol 99 (1) ◽  
pp. 89-94 ◽  
Author(s):  
Eugene A. Milus ◽  
Kristian Kristensen ◽  
Mogens S. Hovmøller
Keyword(s):  
Stripe Rust ◽  
Temperature Regime ◽  
Puccinia Striiformis ◽  
Yellow Rust ◽  
Severe Disease ◽  
Lesion Length ◽  
Eastern United States ◽  
Inoculation Site ◽  
Temperature Regimes ◽  
Higher Temperature

Stripe rust (yellow rust) of wheat, caused by Puccinia striiformis f. sp. tritici, has become more severe in eastern United States, Australia, and elsewhere since 2000. Recent research has shown that this coincided with a global spread of two closely related strains that were similar based on virulence phenotype and amplified fragment length polymorphism. The objective of this research was to quantify differences in aggressiveness among isolates representative of the pre-2000 and post-2000 populations. Representative isolates were evaluated at low (10 to 18°C) and high (12 to 28°C) temperature regimes for latent period, lesion length, lesion width, lesion area, and spore production on adult plants of a susceptible wheat cultivar with no known genes for resistance to stripe rust. “New” isolates (since 2000) were significantly more aggressive than “old” isolates (before 2000) for all variables. At the low temperature regime, new isolates sporulated 2.1 days (16%) sooner, grew 0.3 mm per day (18%) faster, produced 999 (140%) more spores per inoculation site per day, and produced 6.5 (71%) more spores per mm2 of lesion per day compared with old isolates. At the high temperature regime, new isolates sporulated 3 days (26%) sooner, grew 0.2 mm per day (18%) and 2.2 mm2 per day (88%) faster, grew 1.2 mm (50%) wider, produced 774 (370%) more spores per inoculation site per day, and produced 6.2 (159%) more spores per mm2 of lesion per day than old isolates. New isolates showed significant adaptation to the warm temperature regime for all variables. Based on these results and previously published models for stripe rust epidemics, recent severe stripe rust epidemics were most likely enhanced by the pathogen's increased aggressiveness, especially at higher temperature. Furthermore, these results demonstrate that wheat rust fungi can adapt to warmer temperatures and cause severe disease in previously unfavorable environments.

scholarly journals Virulence Characterization of Puccinia striiformis f. sp. tritici Using a New Set of Yr Single-Gene Line Differentials in the United States in 2010

Plant Disease ◽  
2014 ◽  
Vol 98 (11) ◽  
pp. 1534-1542 ◽  
Author(s):  
Anmin Wan ◽  
Xianming Chen
Keyword(s):  
United States ◽  
Stripe Rust ◽  
Large Scale ◽  
Puccinia Striiformis ◽  
Yellow Rust ◽  
Single Gene ◽  
The United States ◽  
The Past ◽  
History Of

Puccinia striiformis f. sp. tritici causes stripe rust (yellow rust) of wheat and is highly variable in virulence toward wheat with race-specific resistance. During 2010, wheat stripe rust was the most widespread in the recorded history of the United States, resulting in large-scale application of fungicides and substantial yield loss. A new differential set with 18 yellow rust (Yr) single-gene lines was established and used to differentiate races of P. striiformis f. sp. tritici, which were named as race PSTv in distinction from the PST races identified in the past. An octal system was used to describe the virulence and avirulence patterns of the PSTv races. From 348 viable P. striiformis f. sp. tritici isolates recovered from a total of 381 wheat and grass stripe rust samples collected in 24 states, 41 races, named PSTv-1 to PSTv-41, were identified using the new set of 18 Yr single-gene differentials, and their equivalent PST race names were determined on the previous set of 20 wheat cultivar differentials. The frequencies and distributions of the races and their virulences were determined. The five most predominant races were PSTv-37 (34.5%), PSTv-11 (17.5%), PSTv-14 (7.2%), PSTv-36 (5.2%), and PSTv-34 (4.9%). PSTv-37 was distributed throughout the country while PSTv-11 and PSTv-14 were almost restricted to states west of the Rocky Mountains. The races had virulence to 0 to 13 of the 18 Yr genes. Frequencies of virulences toward resistance genes Yr6, Yr7, Yr8, Yr9, Yr17, Yr27, Yr43, Yr44, YrTr1, and YrExp2 were high (67.0 to 93.7%); those to Yr1 (32.8%) and YrTye (31.3%) were moderate; and those to Yr10, Yr24, Yr32, and YrSP were low (3.4 to 5.7%). All of the isolates were avirulent to Yr5 and Yr15.

High-temperature adult-plant resistance to stripe rust in facultative winter wheat

2016 ◽  
Vol 67 (10) ◽  
pp. 1064 ◽  
Author(s):  
Beyhan Akin ◽  
Xian Ming Chen ◽  
Alex Morgunov ◽  
Nusret Zencirci ◽  
Anmin Wan ◽  
...  
Keyword(s):  
Molecular Markers ◽  
High Temperature ◽  
Winter Wheat ◽  
Stripe Rust ◽  
Field Experiments ◽  
Puccinia Striiformis ◽  
Yellow Rust ◽  
Stripe Rust Resistance ◽  
Adult Plant ◽  
Improvement Program

Stripe (yellow) rust, caused by Puccinia striiformis Westend. f. sp. tritici Erikss., is one of the most damaging diseases in wheat and is especially damaging for winter and facultative wheat. The objective of this study was to understand stripe rust resistance in 100 wheat and facultative wheat entries from the International Winter Wheat Improvement Program by conducting experiments in a greenhouse and in four field environments in Washington State, USA, and by genotyping molecular markers linked to Yr genes. Percentages of entries resistant to the rust races at the seedling stage were: PST-17, 44%; PST-37, 32%; PST-43, 45%; PST-45, 49%; PST-116, 18%; PST-100, 17%; and PST-127, 8%. Molecular markers were positive for genes Yr9, Yr17, and Yr18 and negative for Yr5, Yr10, and Yr15. Yr18 was present in 44 entries (44%). By using the highly virulent races PST-127 and PST-100 under controlled conditions, 16 entries were shown to have high-temperature adult-plant (HTAP) resistance and resistant–moderately resistant field reactions at all four field sites. Resistant entries, especially those with HTAP resistance, were also identified in the field experiments.

scholarly journals Whole genome resequencing and comparative genome analysis of three Puccinia striiformis f. sp. tritici pathotypes prevalent in India

2021 ◽  
Author(s):  
Inderjit Singh Yadav ◽  
S. C. Bhardwaj ◽  
Jaspal Kaur ◽  
Deepak Singla ◽  
Satinder Kaur ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
Stripe Rust ◽  
Puccinia Striiformis ◽  
Yellow Rust ◽  
Strong Association ◽  
Rapid Evolution ◽  
Whole Genome ◽  
Rust Disease ◽  
The North ◽  
Whole Genome Resequencing

Stripe rust disease of wheat, caused by Puccinia striiformis f. sp. tritici, ( Pst ) is one of the most serious diseases of wheat worldwide. In India, virulent stripe rust races have been constantly evolving in the North-Western Plains Zone leading to the failure of some of the most widely grown resistant varieties in the region. With the goal of studying the recent evolution of virulent races in this region, we conducted whole-genome sequencing of three prevalent Indian Pst pathotypes Pst46S119, Pst78S84 and Pst110S119. We assembled 58.62, 58.33 and 55.78 Mb of Pst110S119, Pst46S119 and Pst78S84 genome, respectively. Pathotypes were found to be highly heterozygous. Comparative phylogenetic analysis indicated the recent evolution of pathotypes Pst110S119 and Pst78S84 from Pst46S119. Pathogenicity-related genes classes (CAZyme, proteases, effectors, and secretome proteins) were identified and found to be under positive selection. Higher rate of gene family expansion was also observed in the three pathotypes. A strong association between the effector genes and transposable elements may be the source of the rapid evolution of these strains. Phylogenetic analysis differentiated the Indian races in this study from other known US, European, African and Asian races. Diagnostic markers developed for the identification of different Pst pathotypes will help tracking of yellow rust at farmers’ field and strategizing resistance gene deployment.

scholarly journals Genome-wide association study reveals new loci for yield-related traits in Sichuan wheat germplasm under stripe rust stress

2019 ◽  
Author(s):  
Xueling Ye ◽  
Jian Li ◽  
Yukun Cheng ◽  
Fangjie Yao ◽  
Li Long ◽  
...  
Keyword(s):  
Association Study ◽  
Candidate Genes ◽  
Stripe Rust ◽  
Genome Wide Association Study ◽  
Puccinia Striiformis ◽  
Kernel Weight ◽  
Genome Wide Association ◽  
Genome Wide ◽  
Meristem Development ◽  
The World

Abstract Background As one of the most important food crops in the world, increasing wheat (Triticum aestivum L.) yield is an urgent task for global food security under the continuous threat of stripe rust (caused by Puccinia striiformis f. sp. tritici) in many regions of the world. Molecular marker-assisted breeding is one of the most efficient ways to increase yield. Here, we identified loci associated to multi-environmental yield-related traits under stripe rust stress in 244 wheat accessions from Sichuan Province through genome-wide association study (GWAS) using 44059 polymorphic markers from the 55K single nucleotide polymorphism (SNP) chip. Results A total of 13 stable quantitative trait loci (QTLs) were found to be highly associating to yield-related traits, including 6 for spike length (SL), 3 for thousand-kernel weight (TKW), 2 for kernel weight per spike (KWPS), and 2 for both TKW and KWPS, in at least two test environments under stripe rust stress conditions. Of them, ten QTLs were overlapped or very close to the reported QTLs, three QTLs, QSL.sicau-1AL, QTKW.sicau-4AL, and QKWPS.sicau-4AL.1, were potentially novel through the physical location comparison with previous QTLs. Further, twenty-one candidate genes within three potentially novel QTLs were identified, they were mainly involved in the regulation of phytohormone, cell division and proliferation, meristem development, plant or organ development, and carbohydrate transport. Conclusions QTLs and candidate genes detected in our study for yield-related traits under stripe rust stress will facilitate elucidating genetic basis of yield-related trait and could be used in marker-assisted selection in wheat yield breeding.

scholarly journals Molecular Characterization of International Collections of the Wheat Stripe Rust Pathogen Puccinia striiformis f. sp. tritici Reveals High Diversity and Intercontinental Migration

2020 ◽  
Vol 110 (4) ◽  
pp. 933-942 ◽  
Author(s):  
Dipak Sharma-Poudyal ◽  
Qing Bai ◽  
Anmin Wan ◽  
Meinan Wang ◽  
Deven See ◽  
...  
Keyword(s):  
Stripe Rust ◽  
Puccinia Striiformis ◽  
Yellow Rust ◽  
Management Strategies ◽  
Global Scale ◽  
Asian Populations ◽  
Wheat Diseases ◽  
Geographic Regions ◽  
High Level

Puccinia striiformis f. sp. tritici causes stripe rust (yellow rust), one of the most important wheat diseases worldwide. To understand the genetic variation of the pathogen in a global scale, 283 P. striiformis f. sp. tritici isolates collected from 16 countries in eight geographic regions were genotyped using 24 codominant simple sequence repeat markers. The overall collection had a high level of genetic diversity, and the diversity levels in the Asian populations were generally higher than those of the other regions. Heterozygosity of isolates ranged from 0 to 75%, with an average of 46%. Mean heterozygosity in individual countries ranged from 34 to 59%. A total of 265 multilocus genotypes (MLGs) were detected, which were classified into eight molecular groups. Some of the molecular groups were present in all geographic regions. Moreover, many isolates from different regions were found to be identical or very closely related MLGs. Analysis of molecular variance revealed high variation within countries and intermediate variation between countries, but it revealed low and insignificant variation among geographic regions. Pairwise comparisons of regional populations detected considerable effective migrants and only low to moderate levels of differentiation. The molecular genotypes had a moderate level of correlation with the virulence phenotypes, and some of the molecular/virulence groups contained isolates from different continents. The results indicate tremendous migrations of P. striiformis f. sp. tritici and warrant the development of management strategies considering the global pathogen population.

scholarly journals Virulence Characterization of International Collections of the Wheat Stripe Rust Pathogen, Puccinia striiformis f. sp. tritici

Plant Disease ◽  
2013 ◽  
Vol 97 (3) ◽  
pp. 379-386 ◽  
Author(s):  
D. Sharma-Poudyal ◽  
X. M. Chen ◽  
A. M. Wan ◽  
G. M. Zhan ◽  
Z. S. Kang ◽  
...  
Keyword(s):  
Virulence Factors ◽  
Stripe Rust ◽  
Puccinia Striiformis ◽  
Yellow Rust ◽  
Single Gene ◽  
The United States ◽  
Wheat Cultivars ◽  
Wheat Stripe Rust ◽  
Important Disease

Wheat stripe rust (yellow rust [Yr]), caused by Puccinia striiformis f. sp. tritici, is an economically important disease of wheat worldwide. Virulence information on P. striiformis f. sp. tritici populations is important to implement effective disease control with resistant cultivars. In total, 235 P. striiformis f. sp. tritici isolates from Algeria, Australia, Canada, Chile, China, Hungary, Kenya, Nepal, Pakistan, Russia, Spain, Turkey, and Uzbekistan were tested on 20 single Yr-gene lines and the 20 wheat genotypes that are used to differentiate P. striiformis f. sp. tritici races in the United States. The 235 isolates were identified as 129 virulence patterns on the single-gene lines and 169 virulence patterns on the U.S. differentials. Virulences to YrA, Yr2, Yr6, Yr7, Yr8, Yr9, Yr17, Yr25, YrUkn, Yr28, Yr31, YrExp2, Lemhi (Yr21), Paha (YrPa1, YrPa2, YrPa3), Druchamp (Yr3a, YrD, YrDru), Produra (YrPr1, YrPr2), Stephens (Yr3a, YrS, YrSte), Lee (Yr7, Yr22, Yr23), Fielder (Yr6, Yr20), Tyee (YrTye), Tres (YrTr1, YrTr2), Express (YrExp1, YrExp2), Clement (Yr9, YrCle), and Compair (Yr8, Yr19) were detected in all countries. At least 80% of the isolates were virulent on YrA, Yr2, Yr6, Yr7, Yr8, Yr17, YrUkn, Yr31, YrExp2, Yr21, Stephens (Yr3a, YrS, YrSte), Lee (Yr7, Yr22, Yr23), and Fielder (Yr6, Yr20). Virulences to Yr1, Yr9, Yr25, Yr27, Yr28, Heines VII (Yr2, YrHVII), Paha (YrPa1, YrPa2, YrPa3), Druchamp (Yr3a, YrD, YrDru), Produra (YrPr1, YrPr2), Yamhill (Yr2, Yr4a, YrYam), Tyee (YrTye), Tres (YrTr1, YrTr2), Hyak (Yr17, YrTye), Express (YrExp1, YrExp2), Clement (Yr9, YrCle), and Compair (Yr8, Yr19) were moderately frequent (>20 to <80%). Virulence to Yr10, Yr24, Yr32, YrSP, and Moro (Yr10, YrMor) was low (≤20%). Virulence to Moro was absent in Algeria, Australia, Canada, Kenya, Russia, Spain, Turkey, and China, but 5% of the Chinese isolates were virulent to Yr10. None of the isolates from Algeria, Canada, China, Kenya, Russia, and Spain was virulent to Yr24; none of the isolates from Algeria, Australia, Canada, Nepal, Russia, and Spain was virulent to Yr32; none of the isolates from Australia, Canada, Chile, Hungary, Kenya, Kenya, Nepal, Pakistan, Russia, and Spain was virulent to YrSP; and none of the isolates from any country was virulent to Yr5 and Yr15. Although the frequencies of virulence factors were different, most of the P. striiformis f. sp. tritici isolates from these countries shared common virulence factors. The virulences and their frequencies and distributions should be useful in breeding stripe-rust-resistant wheat cultivars and understanding the pathogen migration and evolution.

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