Modeling of Fermentation Process of Bacillus Thuringiensis as a Sporulating Bacterium

2018 ◽  
Vol 14 (2) ◽  
Author(s):  
Soroush Soleymani ◽  
Mohammad-Hossein Sarrafzadeh ◽  
Navid Mostoufi

Abstract This paper intended to develop a model for predicting the progress in sporulation of Bacillus thuringiensis as an industrially important sporulating bacterium. Three distinct forms of B. thuringiensis can be observed during the fermentation process: vegetative cells, sporangia and mature spores. A mathematical model was developed for estimating the population of these three cell forms of this bacterium. A cell population balance was derived to represent the dynamic behavior of the fermentation process in a fed-batch culture. An unstructured and segregated model was used for this purpose. Experimental data at various oxygen saturation levels (0, 50 and 100 %) were used for validating the model. The model consists of a partial differential equation that describes the distribution of the cell population based on the cell age. This equation was solved by the method of lines in MATLAB. The proposed model can properly describe the cell populations and sporulation development in the mentioned conditions.

Author(s):  
Diego Sousa Lopes ◽  
Augusto Cezar Cordeiro Jardim ◽  
Diego Estumano ◽  
Emanuel Macêdo ◽  
João Quaresma

2021 ◽  
Vol 22 (1) ◽  
Author(s):  
Fang Wang ◽  
Qihan Wang ◽  
Vakul Mohanty ◽  
Shaoheng Liang ◽  
Jinzhuang Dou ◽  
...  

AbstractWe present a Minimal Event Distance Aneuploidy Lineage Tree (MEDALT) algorithm that infers the evolution history of a cell population based on single-cell copy number (SCCN) profiles, and a statistical routine named lineage speciation analysis (LSA), whichty facilitates discovery of fitness-associated alterations and genes from SCCN lineage trees. MEDALT appears more accurate than phylogenetics approaches in reconstructing copy number lineage. From data from 20 triple-negative breast cancer patients, our approaches effectively prioritize genes that are essential for breast cancer cell fitness and predict patient survival, including those implicating convergent evolution.The source code of our study is available at https://github.com/KChen-lab/MEDALT.


2015 ◽  
Vol 56 (3) ◽  
pp. 233-247 ◽  
Author(s):  
RHYS A. PAUL ◽  
LAWRENCE K. FORBES

We consider a two-step Sal’nikov reaction scheme occurring within a compressible viscous gas. The first step of the reaction may be either endothermic or exothermic, while the second step is strictly exothermic. Energy may also be lost from the system due to Newtonian cooling. An asymptotic solution for temperature perturbations of small amplitude is presented using the methods of strained coordinates and multiple scales, and a travelling wave solution with a sech-squared profile is derived. The method of lines is then used to approximate the full system with a set of ordinary differential equations, which are integrated numerically to track accurately the evolution of the reaction front. This numerical method is used to verify the asymptotic solution and investigate behaviours under different conditions. Using this method, temperature waves progressing as pulsatile fronts are detected at appropriate parameter values.


2008 ◽  
Vol 34 (4) ◽  
pp. 367-372 ◽  
Author(s):  
P. Ciba ◽  
S. Schicktanz ◽  
E. Anders ◽  
E. Siegl ◽  
A. Stielow ◽  
...  

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