scholarly journals Small Ancestry Informative Marker panels for complete classification between the original four HapMap populations

2012 ◽  
Vol 6 (6) ◽  
pp. 651 ◽  
Author(s):  
Damrongrit Setsirichok ◽  
Theera Piroonratana ◽  
Anunchai Assawamakin ◽  
Touchpong Usavanarong ◽  
Chanin Limwongse ◽  
...  
Keyword(s):  
Complete Classification ◽  
Ancestry Informative Marker ◽  
Informative Marker ◽  
Hapmap Populations

1-OR: HLA as an ancestry informative marker (AIM)

2007 ◽  
Vol 68 (1) ◽  
pp. S9
Author(s):  
Loren Gragert ◽  
Martin Maiers ◽  
William Klitz
Keyword(s):  
Ancestry Informative Marker ◽  
Informative Marker

scholarly journals Microhaplotype: Ability of personal identification and being ancestry informative marker

2017 ◽  
Vol 6 ◽  
pp. e442-e444 ◽  
Author(s):  
Yan Pu ◽  
Peng Chen ◽  
Jing Zhu ◽  
Youjing Jiang ◽  
Qingqing Li ◽  
...  
Keyword(s):  
Personal Identification ◽  
Ancestry Informative Marker ◽  
Informative Marker

Ancestry Informative Marker Panel to Estimate Population Stratification Using Genome-wide Human Array

2017 ◽  
Vol 81 (6) ◽  
pp. 225-233 ◽  
Author(s):  
Fernanda B. Barbosa ◽  
Natalia F. Cagnin ◽  
Milena Simioni ◽  
Allysson A. Farias ◽  
Fábio R. Torres ◽  
...  
Keyword(s):  
Population Stratification ◽  
Ancestry Informative Marker ◽  
Informative Marker ◽  
Marker Panel ◽  
Genome Wide

scholarly journals Ancestry Informative Marker Set for Han Chinese Population

2012 ◽  
Vol 2 (3) ◽  
pp. 339-341 ◽  
Author(s):  
Hui-Qi Qu ◽  
Quan Li ◽  
Shuhua Xu ◽  
Joseph B. McCormick ◽  
Susan P. Fisher-Hoch ◽  
...  
Keyword(s):  
Chinese Population ◽  
Han Chinese ◽  
Ancestry Informative Marker ◽  
Informative Marker ◽  
Han Chinese Population

Inference of Ancestry in Forensic Analysis I: Autosomal Ancestry-Informative Marker Sets

2016 ◽  
pp. 233-253 ◽  
Author(s):  
Chris Phillips ◽  
Carla Santos ◽  
Manuel Fondevila ◽  
Ángel Carracedo ◽  
Maria Victoria Lareu
Keyword(s):  
Forensic Analysis ◽  
Ancestry Informative Marker ◽  
Informative Marker

Analysis of the genetic structure of the Malay population: Ancestry-informative marker SNPs in the Malay of Peninsular Malaysia

2017 ◽  
Vol 30 ◽  
pp. 152-159 ◽  
Author(s):  
Padillah Yahya ◽  
Sarina Sulong ◽  
Azian Harun ◽  
Hatin Wan Isa ◽  
Nur-Shafawati Ab Rajab ◽  
...  
Keyword(s):  
Genetic Structure ◽  
Peninsular Malaysia ◽  
Ancestry Informative Marker ◽  
Informative Marker ◽  
Malay Population

scholarly journals Ancestry informative marker sets for determining continental origin and admixture proportions in common populations in America

2009 ◽  
Vol 30 (1) ◽  
pp. 69-78 ◽  
Author(s):  
Roman Kosoy ◽  
Rami Nassir ◽  
Chao Tian ◽  
Phoebe A. White ◽  
Lesley M. Butler ◽  
...  
Keyword(s):  
Ancestry Informative Marker ◽  
Informative Marker ◽  
Continental Origin

scholarly journals Optimizing Multiplex PCR for a Set of Malay Ancestry Informative Marker-Single Nucleotide Polymorphisms (AIM-SNPs) and Preliminary Analysis of Genotypes Between Malay and non-Malay Population.

2021 ◽  
Vol 5 (2) ◽  
pp. 52-61
Author(s):  
Yi-Ting Cheng ◽  
Sharifah-Nany Rahayu-Karmilla Syed-Hassan ◽  
Padillah Yahya ◽  
Azian Harun ◽  
Nazihah Mohd Yunus ◽  
...  
Keyword(s):  
Single Nucleotide Polymorphisms ◽  
International Hapmap Project ◽  
Nucleotide Polymorphisms ◽  
Ancestry Informative Marker ◽  
Informative Marker ◽  
Single Nucleotide ◽  
Asian Populations ◽  
Base Extension ◽  
Malay Population ◽  
Snp Panels

Background: Inference of genetic ancestry is of great interest in many fields and one of the markers in these analyses is ancestry informative marker single nucleotide polymorphisms (AIMSNPs). The Malay population is an ethnic group located mainly in South East Asia and comprises the largest ethnicity in Malaysia. Objectives: To determine Malay ancestry, Yahya et al, 2017 selected 37,487 SNPs from the genotyping data collected by the Malaysian Node of the Human Variome Project and Singapore Genome Variation Project and referenced them against the data from the International HapMap Project Phase 3. The SNPs determined to be informative for ancestry were compiled into AIM-SNP panels, and from these a few SNPs were selected for optimization in preparation for single base extension reaction multiplexing. Methodology: The chosen AIMSNPs were optimized and validated on Malay and non-Malay populations. Genotyping was carried out on participants of self-reported Malay and non-Malay ancestry respectively and the data were compared for Malay and non-Malay population to investigate for significant differences in the genotype between Malay and non-Malay participants. Findings: The results showed great similarities between the Malay and non-Malay population, which may arise from many factors, and further optimization of more SNPs and genotyping is required to definitively conclude the validity of the AIM-SNP panels for Malay population Conclusion: Knowledge of ancestry is important to minimise spurious association. This pilot study gives a brief account of the optimization process and offers an insight into how this may be done in South East Asian populations.

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