An integrated probabilistic approach for gene function prediction using multiple sources of high-throughput data

Chao Zhang; Trupti Joshi; Guan Ning Lin; Dong Xu

doi:10.1504/ijcbdd.2008.021418

An integrated probabilistic approach for gene function prediction using multiple sources of high-throughput data

International Journal of Computational Biology and Drug Design ◽

10.1504/ijcbdd.2008.021418 ◽

2008 ◽

Vol 1 (3) ◽

pp. 254 ◽

Cited By ~ 3

Author(s):

Chao Zhang ◽

Trupti Joshi ◽

Guan Ning Lin ◽

Dong Xu

Keyword(s):

High Throughput ◽

Gene Function ◽

Probabilistic Approach ◽

Function Prediction ◽

Gene Function Prediction ◽

Multiple Sources ◽

High Throughput Data

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Genome-Scale Gene Function Prediction Using Multiple Sources of High-Throughput Data in Yeast Saccharomyces cerevisiae

OMICS A Journal of Integrative Biology ◽

10.1089/omi.2004.8.322 ◽

2004 ◽

Vol 8 (4) ◽

pp. 322-333 ◽

Cited By ~ 27

Author(s):

Trupti Joshi ◽

Yu Chen ◽

Jeffrey M. Becker ◽

Nickolai Alexandrov ◽

Dong Xu

Keyword(s):

Saccharomyces Cerevisiae ◽

High Throughput ◽

Gene Function ◽

Function Prediction ◽

Gene Function Prediction ◽

Multiple Sources ◽

Yeast Saccharomyces Cerevisiae ◽

High Throughput Data ◽

Genome Scale

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GENOME-SCALE PROTEIN FUNCTION PREDICTION IN YEAST SACCHAROMYCES CEREVISIAE THROUGH INTEGRATING MULTIPLE SOURCES OF HIGH-THROUGHPUT DATA

Biocomputing 2005 ◽

10.1142/9789812702456_0045 ◽

2004 ◽

Cited By ~ 5

Author(s):

YU CHEN ◽

DONG XU

Keyword(s):

Saccharomyces Cerevisiae ◽

High Throughput ◽

Protein Function ◽

Protein Function Prediction ◽

Function Prediction ◽

Multiple Sources ◽

Yeast Saccharomyces Cerevisiae ◽

High Throughput Data ◽

Genome Scale

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Gene clustering and gene function prediction using multiple sources of data

2006 IEEE International Workshop on Genomic Signal Processing and Statistics ◽

10.1109/gensips.2006.353182 ◽

2006 ◽

Author(s):

Hossein Zare ◽

Arkady Khodursky ◽

Mostafa Kaveh

Keyword(s):

Gene Function ◽

Function Prediction ◽

Gene Clustering ◽

Gene Function Prediction ◽

Multiple Sources

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Faculty Opinions recommendation of The art of gene function prediction.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.1056759.508687 ◽

2006 ◽

Author(s):

Martin Noble

Keyword(s):

Gene Function ◽

Function Prediction ◽

Gene Function Prediction

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Faculty Opinions recommendation of Network-Based Gene Function Prediction in Mouse and Other Model Vertebrates Using MouseNet Server.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.727562216.793535246 ◽

2017 ◽

Author(s):

John Hancock

Keyword(s):

Gene Function ◽

Function Prediction ◽

Gene Function Prediction

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Gene Function Prediction from Functional Association Networks Using Kernel Partial Least Squares Regression

PLoS ONE ◽

10.1371/journal.pone.0134668 ◽

2015 ◽

Vol 10 (8) ◽

pp. e0134668 ◽

Cited By ~ 12

Author(s):

Sonja Lehtinen ◽

Jon Lees ◽

Jürg Bähler ◽

John Shawe-Taylor ◽

Christine Orengo

Keyword(s):

Least Squares ◽

Partial Least Squares ◽

Gene Function ◽

Partial Least Squares Regression ◽

Function Prediction ◽

Least Squares Regression ◽

Gene Function Prediction ◽

Functional Association ◽

Kernel Partial Least Squares

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Protein function prediction with high-throughput data

Amino Acids ◽

10.1007/s00726-008-0077-y ◽

2008 ◽

Vol 35 (3) ◽

pp. 517-530 ◽

Cited By ~ 26

Author(s):

Xing-Ming Zhao ◽

Luonan Chen ◽

Kazuyuki Aihara

Keyword(s):

High Throughput ◽

Protein Function ◽

Protein Function Prediction ◽

Function Prediction ◽

High Throughput Data

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Using similarity learning to improve network-based gene function prediction

2012 IEEE International Conference on Bioinformatics and Biomedicine ◽

10.1109/bibm.2012.6392663 ◽

2012 ◽

Cited By ~ 1

Author(s):

Ngo Phuong Nhung ◽

Tu Minti Phuong

Keyword(s):

Gene Function ◽

Function Prediction ◽

Similarity Learning ◽

Gene Function Prediction

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Gene Function Prediction and Functional Network: The Role of Gene Ontology

Intelligent Systems Reference Library - Data Mining: Foundations and Intelligent Paradigms ◽

10.1007/978-3-642-23151-3_7 ◽

2012 ◽

pp. 123-162 ◽

Cited By ~ 1

Author(s):

Erliang Zeng ◽

Chris Ding ◽

Kalai Mathee ◽

Lisa Schneper ◽

Giri Narasimhan

Keyword(s):

Gene Ontology ◽

Gene Function ◽

Function Prediction ◽

Functional Network ◽

Gene Function Prediction

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A hierarchical multi-label classification method based on neural networks for gene function prediction

Biotechnology & Biotechnological Equipment ◽

10.1080/13102818.2018.1521302 ◽

2018 ◽

Vol 32 (6) ◽

pp. 1613-1621 ◽

Cited By ~ 4

Author(s):

Shou Feng ◽

Ping Fu ◽

Wenbin Zheng

Keyword(s):

Neural Networks ◽

Gene Function ◽

Function Prediction ◽

Classification Method ◽

Gene Function Prediction

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