Classification and functional characterisation of the murine gut bacterial family Muribaculaceae

2021 ◽  
Author(s):  
◽  
Maximilian Lacour
Keyword(s):  
Functional Characterisation

Isolation and functional characterisation of serotonin containing enterochromaffin (EC) cells from the rat Ileum

2001 ◽  
Vol 120 (5) ◽  
pp. A175
Author(s):  
Agnes Pohlinger ◽  
Helmut J. Kolb ◽  
Christian Prinz
Keyword(s):  
Rat Ileum ◽  
Functional Characterisation ◽  
Ec Cells

scholarly journals Functional Characterisation of the Poplar Atypical Aspartic Protease Gene PtAP66 in Wood Secondary Cell Wall Deposition

Forests ◽  
2021 ◽  
Vol 12 (8) ◽  
pp. 1002
Author(s):  
Shenquan Cao ◽  
Cong Wang ◽  
Huanhuan Ji ◽  
Mengjie Guo ◽  
Jiyao Cheng ◽  
...  
Keyword(s):  
Cell Wall ◽  
Secondary Cell Wall ◽  
Fluorescent Protein ◽  
Secondary Xylem ◽  
Populus Trichocarpa ◽  
Wood Formation ◽  
Protease Gene ◽  
Cellulose Content ◽  
Transcription Analysis ◽  
Functional Characterisation

Secondary cell wall (SCW) deposition is an important process during wood formation. Although aspartic proteases (APs) have been reported to have regulatory roles in herbaceous plants, the involvement of atypical APs in SCW deposition in trees has not been reported. In this study, we characterised the Populus trichocarpa atypical AP gene PtAP66, which is involved in wood SCW deposition. Transcriptome data from the AspWood resource showed that in the secondary xylem of P. trichocarpa, PtAP66 transcripts increased from the vascular cambium to the xylem cell expansion region and maintained high levels in the SCW formation region. Fluorescent signals from transgenic Arabidopsis plant roots and transiently transformed P. trichocarpa leaf protoplasts strongly suggested that the PtAP66-fused fluorescent protein (PtAP66-GFP or PtAP66-YFP) localised in the plasma membrane. Compared with the wild-type plants, the Cas9/gRNA-induced PtAP66 mutants exhibited reduced SCW thickness of secondary xylem fibres, as suggested by the scanning electron microscopy (SEM) data. In addition, wood composition assays revealed that the cellulose content in the mutants decreased by 4.90–5.57%. Transcription analysis further showed that a loss of PtAP66 downregulated the expression of several SCW synthesis-related genes, including cellulose and hemicellulose synthesis enzyme-encoding genes. Altogether, these findings indicate that atypical PtAP66 plays an important role in SCW deposition during wood formation.

scholarly journals Novel strain-level resolution of Crohn’s disease mucosa-associated microbiota via an ex vivo combination of microbe culture and metagenomic sequencing

2021 ◽  
Author(s):  
J. J. Teh ◽  
E. M. Berendsen ◽  
E. C. Hoedt ◽  
S. Kang ◽  
J. Zhang ◽  
...  
Keyword(s):  
Crohn’S Disease ◽  
Crohn's Disease ◽  
Ex Vivo ◽  
Taxonomic Composition ◽  
Strain Level ◽  
Patient Specific ◽  
Rrna Gene ◽  
Metagenomic Sequencing ◽  
Functional Characterisation ◽  
Bacterial Lineages

AbstractThe mucosa-associated microbiota is widely recognized as a potential trigger for Crohn’s disease pathophysiology but remains largely uncharacterised beyond its taxonomic composition. Unlike stool microbiota, the functional characterisation of these communities using current DNA/RNA sequencing approaches remains constrained by the relatively small microbial density on tissue, and the overwhelming amount of human DNA recovered during sample preparation. Here, we have used a novel ex vivo approach that combines microbe culture from anaerobically preserved tissue with metagenome sequencing (MC-MGS) to reveal patient-specific and strain-level differences among these communities in post-operative Crohn’s disease patients. The 16 S rRNA gene amplicon profiles showed these cultures provide a representative and holistic representation of the mucosa-associated microbiota, and MC-MGS produced both high quality metagenome-assembled genomes of recovered novel bacterial lineages. The MC-MGS approach also produced a strain-level resolution of key Enterobacteriacea and their associated virulence factors and revealed that urease activity underpins a key and diverse metabolic guild in these communities, which was confirmed by culture-based studies with axenic cultures. Collectively, these findings using MC-MGS show that the Crohn’s disease mucosa-associated microbiota possesses taxonomic and functional attributes that are highly individualistic, borne at least in part by novel bacterial lineages not readily isolated or characterised from stool samples using current sequencing approaches.

Human CD8 T stem cell memory subsets phenotypic and functional characterisation are defined by expression of CD122 or CXCR3

2021 ◽  
Author(s):  
Yanran Zhao ◽  
Curtis Cai ◽  
Jerome Samir ◽  
Jean‐Louis Palgen ◽  
Elizabeth Keoshkerian ◽  
...  
Keyword(s):  
Stem Cell ◽  
Cell Memory ◽  
Functional Characterisation

A key gene of the RNA interference pathway in the black tiger shrimp, Penaeus monodon: Identification and functional characterisation of Dicer-1

2008 ◽  
Vol 24 (2) ◽  
pp. 223-233 ◽  
Author(s):  
Jianguo Su ◽  
Dang T.H. Oanh ◽  
Russell E. Lyons ◽  
Lisa Leeton ◽  
Marielle C.W. van Hulten ◽  
...  
Keyword(s):  
Rna Interference ◽  
Penaeus Monodon ◽  
Black Tiger Shrimp ◽  
Tiger Shrimp ◽  
Functional Characterisation

Functional characterisation of the CFTR mutations M348V and A1087P from patients with pancreatitis suggests functional interaction between CFTR monomers

Gut ◽  
2009 ◽  
Vol 58 (5) ◽  
pp. 733-734 ◽  
Author(s):  
F U Weiss ◽  
P Simon ◽  
N Bogdanova ◽  
N Shcheynikov ◽  
S Muallem ◽  
...  
Keyword(s):  
Functional Interaction ◽  
Functional Characterisation ◽  
Cftr Mutations

Functional characterisation of genes involved in pyridine alkaloid biosynthesis in tobacco

2007 ◽  
Vol 68 (22-24) ◽  
pp. 2773-2785 ◽  
Author(s):  
Suvi T. Häkkinen ◽  
Sofie Tilleman ◽  
Agnieszka Šwiątek ◽  
Valerie De Sutter ◽  
Heiko Rischer ◽  
...  
Keyword(s):  
Alkaloid Biosynthesis ◽  
Functional Characterisation
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