scholarly journals Identification of Novel Small RNAs and Characterization of the 6S RNA of Coxiella burnetii

PLoS ONE ◽  
2014 ◽  
Vol 9 (6) ◽  
pp. e100147 ◽  
Author(s):  
Indu Warrier ◽  
Linda D. Hicks ◽  
James M. Battisti ◽  
Rahul Raghavan ◽  
Michael F. Minnick
Keyword(s):  
Coxiella Burnetii ◽  
Small Rnas ◽  
6S Rna

Characterization of small RNAs in early zebrafish PGCs

2021 ◽  
Author(s):  
Xiaoyuan Zhang ◽  
Yiping Li ◽  
Yunbin Zhang ◽  
Shifeng Li
Keyword(s):  
Small Rnas

scholarly journals Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes

2006 ◽  
Vol 20 (13) ◽  
pp. 1732-1743 ◽  
Author(s):  
Toshiaki Watanabe ◽  
Atsushi Takeda ◽  
Tomoyuki Tsukiyama ◽  
Kazuyuki Mise ◽  
Tetsuro Okuno ◽  
...  
Keyword(s):  
Small Rnas ◽  
Identification And Characterization

scholarly journals First molecular detection and genetic characterization of Coxiella burnetii in Zambian dogs and rodents

2018 ◽  
Vol 11 (1) ◽  
Author(s):  
Simbarashe Chitanga ◽  
Edgar Simulundu ◽  
Martin C. Simuunza ◽  
Katendi Changula ◽  
Yongjin Qiu ◽  
...  
Keyword(s):  
Coxiella Burnetii ◽  
Molecular Detection ◽  
Genetic Characterization

scholarly journals Isolation and characterization of a plasmid from phase I Coxiella burnetii.

1983 ◽  
Vol 41 (2) ◽  
pp. 488-493 ◽  
Author(s):  
J E Samuel ◽  
M E Frazier ◽  
M L Kahn ◽  
L S Thomashow ◽  
L P Mallavia
Keyword(s):  
Phase I ◽  
Coxiella Burnetii ◽  
Isolation And Characterization

scholarly journals sRNA Target Prediction Organizing Tool (SPOT) Integrates Computational and Experimental Data To Facilitate Functional Characterization of Bacterial Small RNAs

mSphere ◽  
2019 ◽  
Vol 4 (1) ◽  
Author(s):  
Alisa M. King ◽  
Carin K. Vanderpool ◽  
Patrick H. Degnan
Keyword(s):  
Experimental Data ◽  
Stress Responses ◽  
Small Rnas ◽  
Metabolic Regulation ◽  
Functional Characterization ◽  
Target Prediction ◽  
Structure Stability ◽  
Accurate Identification ◽  
Mrna Targets

Small RNAs (sRNAs) regulate gene expression in diverse bacteria by interacting with mRNAs to change their structure, stability, or translation. Hundreds of sRNAs have been identified in bacteria, but characterization of their regulatory functions is limited by difficulty with sensitive and accurate identification of mRNA targets. Thus, new robust methods of bacterial sRNA target identification are in demand. Here, we describe our small RNA target prediction organizing tool (SPOT), which streamlines the process of sRNA target prediction by providing a single pipeline that combines available computational prediction tools with customizable results filtering based on experimental data. SPOT allows the user to rapidly produce a prioritized list of predicted sRNA-target mRNA interactions that serves as a basis for further experimental characterization. This tool will facilitate elucidation of sRNA regulons in bacteria, allowing new discoveries regarding the roles of sRNAs in bacterial stress responses and metabolic regulation.

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