The Textile Plot: A New Linkage Disequilibrium Display of Multiple-Single Nucleotide Polymorphism Genotype Data

Natsuhiko Kumasaka; Yusuke Nakamura; Naoyuki Kamatani

doi:10.1371/journal.pone.0010207

The Textile Plot: A New Linkage Disequilibrium Display of Multiple-Single Nucleotide Polymorphism Genotype Data

PLoS ONE ◽

10.1371/journal.pone.0010207 ◽

2010 ◽

Vol 5 (4) ◽

pp. e10207 ◽

Cited By ~ 15

Author(s):

Natsuhiko Kumasaka ◽

Yusuke Nakamura ◽

Naoyuki Kamatani

Keyword(s):

Single Nucleotide Polymorphism ◽

Linkage Disequilibrium ◽

Single Nucleotide Polymorphism Genotype ◽

Genotype Data ◽

Nucleotide Polymorphism ◽

Single Nucleotide

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Little Loss of Information Due to Unknown Phase for Fine-Scale Linkage-Disequilibrium Mapping with Single-Nucleotide–Polymorphism Genotype Data

The American Journal of Human Genetics ◽

10.1086/420773 ◽

2004 ◽

Vol 74 (5) ◽

pp. 945-953 ◽

Cited By ~ 53

Author(s):

A.P. Morris ◽

J.C. Whittaker ◽

D.J. Balding

Keyword(s):

Single Nucleotide Polymorphism ◽

Linkage Disequilibrium ◽

Single Nucleotide Polymorphism Genotype ◽

Linkage Disequilibrium Mapping ◽

Genotype Data ◽

Fine Scale ◽

Nucleotide Polymorphism ◽

Single Nucleotide ◽

Loss Of Information ◽

Unknown Phase

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Faculty Opinions recommendation of Little loss of information due to unknown phase for fine-scale linkage-disequilibrium mapping with single-nucleotide-polymorphism genotype data.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.1020223.231471 ◽

2004 ◽

Author(s):

Magnus Nordborg

Keyword(s):

Single Nucleotide Polymorphism ◽

Linkage Disequilibrium ◽

Single Nucleotide Polymorphism Genotype ◽

Linkage Disequilibrium Mapping ◽

Genotype Data ◽

Fine Scale ◽

Nucleotide Polymorphism ◽

Single Nucleotide ◽

Loss Of Information ◽

Unknown Phase

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Characterization of an X-chromosomal non-mosaic monosomy (59, X0) dairy heifer detected using routinely available single nucleotide polymorphism genotype data

Journal of Animal Science ◽

10.2527/jas2016.1279 ◽

2017 ◽

Vol 95 (3) ◽

pp. 1042

Author(s):

D. P. Berry ◽

A. Wolfe ◽

J. O’Donovan ◽

N. Byrne ◽

R. G. Sayers ◽

...

Keyword(s):

Single Nucleotide Polymorphism ◽

Single Nucleotide Polymorphism Genotype ◽

Genotype Data ◽

Nucleotide Polymorphism ◽

Single Nucleotide ◽

Dairy Heifer

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Genotype data for single nucleotide polymorphism markers in sporadic breast cancer related genes in a Sri Lankan case–control cohort of postmenopausal women

BMC Research Notes ◽

10.1186/s13104-019-4472-0 ◽

2019 ◽

Vol 12 (1) ◽

Author(s):

Nirmala Dushyanthi Sirisena ◽

Nilakshi Samaranayake ◽

Vajira H. W. Dissanayake

Keyword(s):

Breast Cancer ◽

Single Nucleotide Polymorphism ◽

Postmenopausal Women ◽

Sporadic Breast Cancer ◽

Case Control ◽

Sri Lankan ◽

Genotype Data ◽

Control Cohort ◽

Nucleotide Polymorphism ◽

Single Nucleotide

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Linkage Disequilibrium and Inference of Ancestral Recombination in 538 Single-Nucleotide Polymorphism Clusters across the Human Genome

The American Journal of Human Genetics ◽

10.1086/377138 ◽

2003 ◽

Vol 73 (2) ◽

pp. 285-300 ◽

Cited By ~ 54

Author(s):

Andrew G. Clark ◽

Rasmus Nielsen ◽

James Signorovitch ◽

Tara C. Matise ◽

Stephen Glanowski ◽

...

Keyword(s):

Single Nucleotide Polymorphism ◽

Linkage Disequilibrium ◽

Human Genome ◽

Nucleotide Polymorphism ◽

Single Nucleotide

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Estimation of linkage disequilibrium and interspecific gene flow in F icedula flycatchers by a newly developed 50k single‐nucleotide polymorphism array

Molecular Ecology Resources ◽

10.1111/1755-0998.12270 ◽

2014 ◽

Vol 14 (6) ◽

pp. 1248-1260 ◽

Cited By ~ 40

Author(s):

Takeshi Kawakami ◽

Niclas Backström ◽

Reto Burri ◽

Arild Husby ◽

Pall Olason ◽

...

Keyword(s):

Single Nucleotide Polymorphism ◽

Linkage Disequilibrium ◽

Gene Flow ◽

Single Nucleotide Polymorphism Array ◽

Nucleotide Polymorphism ◽

Single Nucleotide ◽

Interspecific Gene Flow

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Characterisation of linkage disequilibrium and subsequent estimation of effective population size in Thoroughbred horses using single nucleotide polymorphism markers

Advances in Animal Biosciences ◽

10.1017/s2040470010002013 ◽

2010 ◽

Vol 1 (1) ◽

pp. 58-58

Author(s):

L J Corbin ◽

S C Bishop ◽

J E Swinburne ◽

M Vaudin ◽

S C Blott ◽

...

Keyword(s):

Single Nucleotide Polymorphism ◽

Linkage Disequilibrium ◽

Population Size ◽

Effective Population Size ◽

Nucleotide Polymorphism ◽

Effective Population ◽

Single Nucleotide ◽

Thoroughbred Horses

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Assessment of Linkage Disequilibrium in Potato Genome With Single Nucleotide Polymorphism Markers

Genetics ◽

10.1534/genetics.106.060905 ◽

2006 ◽

Vol 173 (4) ◽

pp. 2237-2245 ◽

Cited By ~ 82

Author(s):

Ivan Simko ◽

Kathleen G. Haynes ◽

Richard W. Jones

Keyword(s):

Single Nucleotide Polymorphism ◽

Linkage Disequilibrium ◽

Nucleotide Polymorphism ◽

Single Nucleotide ◽

Potato Genome

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Faculty Opinions recommendation of Identification of a psoriasis susceptibility candidate gene by linkage disequilibrium mapping with a localized single nucleotide polymorphism map.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.1006151.77005 ◽

2002 ◽

Author(s):

Alejandro Schaffer

Keyword(s):

Single Nucleotide Polymorphism ◽

Linkage Disequilibrium ◽

Candidate Gene ◽

Linkage Disequilibrium Mapping ◽

Nucleotide Polymorphism ◽

Single Nucleotide

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Faculty Opinions recommendation of Identification of a psoriasis susceptibility candidate gene by linkage disequilibrium mapping with a localized single nucleotide polymorphism map.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.1006151.146861 ◽

2002 ◽

Author(s):

Andy Chan

Keyword(s):

Single Nucleotide Polymorphism ◽

Linkage Disequilibrium ◽

Candidate Gene ◽

Linkage Disequilibrium Mapping ◽

Nucleotide Polymorphism ◽

Single Nucleotide

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