A New Data Clustering Algorithm for Parallel Whole-Genome Shotgun Sequence Assembly

2006 ◽  
Vol 43 (8) ◽  
pp. 1323
Author(s):  
Jiao Lin
Keyword(s):  
Data Clustering ◽  
Clustering Algorithm ◽  
Sequence Assembly ◽  
Whole Genome Shotgun ◽  
Whole Genome ◽  
Shotgun Sequence ◽  
Whole Genome Shotgun Sequence ◽  
Genome Shotgun Sequence

Applications of the double-barreled data in whole-genome shotgun sequence assembly and analysis

2005 ◽  
Vol 48 (3) ◽  
pp. 300-306
Author(s):  
Yujun Han ◽  
Peixiang Ni ◽  
Hong Lü ◽  
Jia Ye ◽  
Jianfei Hu ◽  
...  
Keyword(s):  
Sequence Assembly ◽  
Whole Genome Shotgun ◽  
Whole Genome ◽  
Shotgun Sequence ◽  
Whole Genome Shotgun Sequence ◽  
Genome Shotgun Sequence

scholarly journals Whole-Genome Shotgun Sequence of Halomonas sp. Strain SBS 10, Isolated from a Hypersaline Lake in India

2020 ◽  
Vol 9 (1) ◽  
Author(s):  
Bijayendra Kushwaha ◽  
Guru Prasad Sharma ◽  
Anshul Sharma ◽  
Prem Shankar ◽  
Anjali Geethadevi ◽  
...  
Keyword(s):  
Genome Size ◽  
Gene Clusters ◽  
Halophilic Bacterium ◽  
Whole Genome Shotgun ◽  
Hypersaline Lake ◽  
Whole Genome ◽  
Shotgun Sequence ◽  
Whole Genome Shotgun Sequence ◽  
Moderately Halophilic Bacterium ◽  
Genome Shotgun Sequence

The whole-genome shotgun sequence of a moderately halophilic bacterium, Halomonas sp. strain SBS 10, was assembled and studied. The assembled genome size was 1.5 Mb, with a G+C content of 63.6%. The genome sequence of this Halomonas sp. SBS 10 isolate will be valuable in understanding gene clusters and functions involved in the adaptability of this bacterium to hypersaline conditions.

scholarly journals Whole-Genome Shotgun Sequence of Salmonella bongori, First Isolated in Northwestern Italy

2017 ◽  
Vol 5 (27) ◽  
Author(s):  
Angelo Romano ◽  
Alberto Bellio ◽  
Guerrino Macori ◽  
Paul D. Cotter ◽  
Daniela Manila Bianchi ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Draft Genome ◽  
Symptomatic Patient ◽  
Whole Genome Shotgun ◽  
Draft Genome Sequence ◽  
Whole Genome ◽  
Content Type ◽  
Shotgun Sequence ◽  
Whole Genome Shotgun Sequence ◽  
Genome Shotgun Sequence

ABSTRACT This study describes the whole-genome shotgun sequence of Salmonella bongori 48:z35:–, originally isolated from a 1-year-old symptomatic patient in northwest Italy, a typically nonendemic area. The draft genome sequence contained 4.56 Mbp and the G+C content was 51.27%.

scholarly journals Long-read, whole-genome shotgun sequence data for five model organisms

2014 ◽  
Vol 1 (1) ◽  
Author(s):  
Kristi E Kim ◽  
Paul Peluso ◽  
Primo Babayan ◽  
P. Jane Yeadon ◽  
Charles Yu ◽  
...  
Keyword(s):  
Sequence Data ◽  
Whole Genome Shotgun ◽  
Model Organisms ◽  
Whole Genome ◽  
Shotgun Sequence ◽  
Whole Genome Shotgun Sequence ◽  
Long Read ◽  
Genome Shotgun Sequence

scholarly journals Annotated Whole-Genome Shotgun Sequence of Multidrug-Resistant Mycobacterium tuberculosis MTB13_M Isolated from Morocco

2017 ◽  
Vol 5 (9) ◽  
Author(s):  
L. Lahlou ◽  
N. El Mrimar ◽  
T. Alouane ◽  
M. Laamarti ◽  
S. Karti ◽  
...  
Keyword(s):  
Mycobacterium Tuberculosis ◽  
Genome Sequence ◽  
Sputum Sample ◽  
Multidrug Resistant ◽  
Whole Genome Shotgun ◽  
Whole Genome ◽  
Content Type ◽  
Shotgun Sequence ◽  
Whole Genome Shotgun Sequence ◽  
Genome Shotgun Sequence

ABSTRACT Here, we describe the annotated genome sequence of Mycobacterium tuberculosis MTB13_M. The organism was isolated from a sputum sample in Morocco.

scholarly journals Organization and Evolution of Primate Centromeric DNA from Whole-Genome Shotgun Sequence Data

2007 ◽  
Vol 3 (9) ◽  
pp. e181 ◽  
Author(s):  
Can Alkan ◽  
Mario Ventura ◽  
Nicoletta Archidiacono ◽  
Mariano Rocchi ◽  
S. Cenk Sahinalp ◽  
...  
Keyword(s):  
Sequence Data ◽  
Whole Genome Shotgun ◽  
Whole Genome ◽  
Centromeric Dna ◽  
Shotgun Sequence ◽  
Whole Genome Shotgun Sequence ◽  
Genome Shotgun Sequence
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