scholarly journals Developmental, morphological and molecular variation of commercial Ganoderma spp. accessions from southern Vietnam

2019 ◽  
Vol 20 (12) ◽  
Author(s):  
Viet The Ho ◽  
Thi Ngoc Ha Vo ◽  
Ngoc Giau Le
Keyword(s):  
Measurement Data ◽  
Molecular Data ◽  
Morphological Characterization ◽  
Issr Markers ◽  
Molecular Variation ◽  
Genetic Composition ◽  
Sample Collection ◽  
Morphological Variations ◽  
Southern Vietnam ◽  
Molecular Assisted Selection

Abstract. Ho VT, Vo TNH, Le NG. 2019. Developmental, morphological and molecular variation of commercial Ganoderma spp. accessions from southern Vietnam. Biodiversitas 20: 3684-3689. In Vietnam, the market value of Ganoderma spp. increases markedly recently due to the high demand as an effective medicine. However, the breeding programs for this mushroom are still less effective due to the poor knowledge of genetic composition. This study was conducted to investigate the diversity of some commercial Ganoderma spp. accessions from southern Vietnam using both traditional techniques using developmental and morphological characterization, and molecular method using ISSR markers. A total of nine Ganoderma spp. samples were collected from production areas and research institutes in southern provinces of Vietnam and targeted for developmental and molecular characterization. Developmental and morphological variations among accessions were evaluation. In addition, 20 ISSR markers were also utilized for further understanding genetic composition of these mushrooms. The obtained measurement data show a large variation among the studied Ganoderma spp. accessions in term of mycelia growth, diameter, shape, and dried weight of fruiting bodies. Molecular data from 20 ISSR markers also supported genetic variation of the examined samples. Based on the results of this study, the samples of Ganoderma spp. accessions from southern Vietnam can be divided into two main groups which are not correlated to geographical locations of sample collection sites. The results are potential for classification and provide new insights for molecular assisted selection of Ganoderma spp.

scholarly journals Genetic variability of Indonesian eggplant (Solanum melongena) based on ISSR markers

2019 ◽  
Vol 20 (10) ◽  
Author(s):  
U.B. HUSNUDIN ◽  
B.S. DARYONO ◽  
Purnomo Purnomo
Keyword(s):  
Genetic Variability ◽  
Solanum Melongena ◽  
Similarity Index ◽  
Molecular Data ◽  
Issr Markers ◽  
Jaccard Coefficient ◽  
Sample Collection ◽  
Multivariate Statistical ◽  
Main Cluster ◽  
Pair Group

Abstract. Husnudin UB, Daryono BS, Purnomo. 2019. Genetic variability of Indonesian Eggplant (Solanum melongena) based on ISSR markers. Biodiversitas 20: 3049-3055. Eggplant (Solanum melongena L.) is one of important vegetable in Indonesia and this country has a variety of eggplant germplasm, whereas molecular data of Indonesian eggplant is limited. This study describes an analysis of genetic variation based on ISSR markers to determine the diversity and phenetic relationship of Indonesian eggplants. 23 samples were collected from the Indonesian Center for Agricultural Biotechnology Research and Development (ICABIOGRAD) and some commercial cultivars. Data were analyzed by ISSR analysis using UBC 809, UBC 880, UBC 888, UBC 892 and UBC 895 primers. Similarity index was counted by Jaccard Coefficient formula based on molecular scoring. Cluster analysis was conducted by Unweighted Pair Group Methods using Arithmetic averages (UPGMA) method to create a dendrogram with Multivariate Statistical Program (MVSP) v.3.1 software. The results showed that ISSR markers were effective in the estimation of the genetic variability of eggplant accessions characterized by different level of polymorphism. Five ISSR primers generated 40 polymorphic bands (64.5% of the total). The dendrogram divided 23 eggplant accessions into 2 main clusters and one accession ("terong jawa"/K18) located outside from the main cluster. Results suggested that all accessions were grouped randomly into some clusters not in accordance with the locations of sample collection.

Taxonomic reassessment of the freshwater mussel genus Unio (Bivalvia: Unionidae) in Russia and Ukraine based on morphological and molecular data

Zootaxa ◽  
2017 ◽  
Vol 4286 (1) ◽  
pp. 93 ◽  
Author(s):  
OLGA KLISHKO ◽  
MANUEL LOPES-LIMA ◽  
ELSA FROUFE ◽  
ARTHUR BOGAN ◽  
LYUDMILA VASILIEV ◽  
...  
Keyword(s):  
Freshwater Mussel ◽  
Integrated Approach ◽  
Molecular Data ◽  
Coi Gene ◽  
Data Set ◽  
Widespread Species ◽  
Molecular Analyses ◽  
Morphological Variations ◽  
Mtdna Coi ◽  
Morphological And Molecular Data

The taxonomy of species within the genus Unio (Bivalvia: Unionidae: Unioninae) in Russia and Ukraine has been contentious due to the lack of correspondence between three concurrent yet divergent classifications. In order to clarify which classification system best reflects the evolutionary relationships among these taxa, we performed detailed morphological analyses on 720 Ukrainian and Russian specimens, complemented with molecular data (COI) from a selected number of specimens. The morphological character data set shows the existence of only three widespread species with slight eco-morphological variations. Statistical analyses of shell morphometric parameters and molecular analyses based on mtDNA COI gene fragment sequences confirm the existence of the same three species within a single genus, Unio, in Russia and Ukraine, that is U. pictorum, U. tumidus and U. crassus. Results from molecular analyses suggest the existence of an additional subgroup within the U. crassus lineage, U. crassus cf. courtilieri that deserves further research. The present integrated approach confirms the validity of the classification by Zhadin (1952) and rejects the complex classifications of Starobogatov et al. (2004) and Bogatov & Kijashko (2016). 

scholarly journals Assessment of relationships among and within Helichrysum Mill. (Asteraceae) species by using ISSR markers and morphological traits

Hacquetia ◽  
2019 ◽  
Vol 18 (1) ◽  
pp. 105-118 ◽  
Author(s):  
Narjes Azizi ◽  
Masoud Sheidai ◽  
Valiollah Mozaffarian ◽  
Mitra Arman ◽  
Zahra Noormohammadi
Keyword(s):  
Genetic Similarity ◽  
Morphological Traits ◽  
Morphological Analysis ◽  
Gene Diversity ◽  
Molecular Data ◽  
Issr Markers ◽  
Diagnostic Features ◽  
Analysis Of Molecular Variance ◽  
Information Index ◽  
Expected Heterozygosity

Abstract This study conducted to determine relationship among and within Iranian Helichrysum species (Asteraceae). In this study based on ISSR markers, the highest percentage of ISSR loci polymorphism (54.7%) occurred in H. armenium. The highest gene diversity over loci (1.224), Shannon’s Information Index (0.224%) and Expected Heterozygosity (0.142%) occurred in H. armenium (0.18) and the lowest of these parameters (0%) were observed in H. araxinum, H. graveolens, H. persicum and H. psychrophilum. The highest genetic similarity occurred between H. armenium and H. rubicundum (0.989), while the lowest was between H. polyphyllum and H. graveolens (0.213). The analysis of molecular variance (AMOVA), showed significant genetic variation among (24%) and within (76%) species. In morphological analysis traits such as indumentum, resting bud, achene length, achenial papillae, dimension of receptacle and form and apex of phyllaries were main diagnostic features. Results obtained from the morphological cluster were greatly consistent with the molecular data, to elucidating taxonomic relationships, as well as both attributed the higher diversity in H. armenium and H. rubicundum in comparison with other species and also indicated that H. persicum is a member of H. oocephalum species. Totally we confirmed the presence of 18 species in Iran.

Comparison of European Trichobilharzia species based on ITS1 and ITS2 sequences

Parasitology ◽  
2002 ◽  
Vol 124 (3) ◽  
pp. 307-313 ◽  
Author(s):  
J. DVOŘÁK ◽  
š. VAŇÁČOVÁ ◽  
V. HAMPL ◽  
J. FLEGR ◽  
P. HORÁK
Keyword(s):  
Ribosomal Rna ◽  
Molecular Data ◽  
Morphological Characterization ◽  
Internal Transcribed Spacers ◽  
Rrna Genes ◽  
Species Determination ◽  
Potential Pathogen ◽  
Veterinary Importance ◽  
Its1 And Its2

Schistosomes are parasites of considerable medical and veterinary importance and, therefore, all aspects of their biology have been intensively studied. In contrast, our knowledge of species of the largest genus, Trichobilharzia, is insufficient. Because morphological characterization of Trichobilharzia species provides a limited number of criteria for species determination, molecular data are required. In the present paper, we sequenced internal transcribed spacers ITS1 and ITS2, and 5·8S ribosomal RNA (rRNA) genes of 3 European Trichobilharzia species (T. regenti, T. szidati and T. franki). We showed that ITS1 and ITS2 sequences can be used in species identification. Repetitive elements were found in ITS1 of all 3 Trichobilharzia species; their number and length varied depending on the species. Phylogenetic analysis showed that the visceral T. franki is more related to the nasal T. regenti, than to the visceral T. szidati. The newly designed primer, which is specific for T. regenti, might be used as a tool for diagnosis of this potential pathogen.

scholarly journals A new Polygonatum (Asparagaceae) endemic to the Trường Sơn of southern Vietnam

Phytotaxa ◽  
2015 ◽  
Vol 197 (2) ◽  
pp. 125 ◽  
Author(s):  
Aaron Jennings Floden
Keyword(s):  
New Species ◽  
Molecular Data ◽  
Southern Vietnam ◽  
Central Highlands ◽  
A New Species

A new species of Polygonatum, P. annamense based on evidence from herbarium studies, molecular data, and cultivated material is described and illustrated from upper elevations of the southern Annamite ecoregion where it occurs disjunctly in both the Central Highlands and the Đà Lạt Plateau, Vietnam. It is compared to the morphologically similar P. punctatum with which it has been confused, and its relationship to P. mengtzense, P. punctatum, and P. urceolatum is discussed.

scholarly journals Butterfly Pea (Clitoria ternatea L.: Fabaceae) and Its Morphological Variations in Bali

2021 ◽  
Vol 6 (2) ◽  
pp. 63013
Author(s):  
I Wayan Suarna ◽  
I Made Saka Wijaya
Keyword(s):  
Ornamental Plants ◽  
Morphological Characterization ◽  
Primary Data ◽  
Natural Food ◽  
Herbaceous Plant ◽  
Clitoria Ternatea ◽  
Morphological Variations ◽  
Perennial Herbaceous Plant ◽  
Wide Range ◽  
Butterfly Pea

Butterfly pea (Clitoria ternatea L.) is an important perennial herbaceous plant with a range of uses as ornamental plants, fodder crops, medicine, and sources of natural food colorant and antioxidants. The leaves and pods are commonly used as a source of protein in fodder, while the flowers are usually dried and processed as a high antioxidant-containing tea. The blue variant of butterfly pea was the most commonly used variety, although there are quite diverse butterfly pea varieties. The present study aimed to observe the morphological variations among the 26 butterfly pea accessions that originated from a wide range of areas in Bali. The explorative method was used to obtain diverse specimens (accessions) of butterfly pea in Bali, and subsequently, morphological characterization of the accessions was performed. The primary data of morphological traits that were recorded included stems, leaves, flower structures, flower colors, pods, and seeds. The data were analyzed descriptively to determine the morphological variations between accessions. The results showed three major morphological variations: (i) the colour of the flower (corolla), (ii) the corolla structure, and (iii) the stamen structure. The colour of corolla has four variations: white, mauve, light blue, and dark blue; while the corolla structure has two variations: normal and multiple layered corollas. The stamen character showed a correlation with the structure of the corolla. The normal corolla has diadelphous stamens, while the multiple layered corollas have solitary stamens. These morphological variations are the genetic richness of Indonesia’s biodiversity and should be protected and conserved.

scholarly journals Morphological, cytological and molecular variations induced by gamma rays in Chrysanthemum morifolium ‘Donglinruixue’

2020 ◽  
Vol 32 (1) ◽  
pp. 87-96
Author(s):  
Ling Wang ◽  
Jianhui Wu ◽  
Feng Lan ◽  
Pengfei Gao
Keyword(s):  
Death Rate ◽  
Control Plant ◽  
Inter Simple Sequence Repeat ◽  
Issr Markers ◽  
Chrysanthemum Morifolium ◽  
Induced Mutations ◽  
Issr Analysis ◽  
Morphological Variations ◽  
Molecular Marker Analysis ◽  
Simple Sequence

AbstractThe current study investigated the effects of gamma radiation on the death rate, morphological traits and meiotic abnormalities in ground-grown chrysanthemum ‘Donglinruixue’, and inter-simple sequence repeat (ISSR) markers were used to identify the DNA polymorphism among mutants. The results showed that the death rate significantly increased with increase in radiation dose. Semi-lethal (LD50) dose was approximately 35 Gy. Compared with unirradiated control, plant growth was significantly inhibited. After irradiation, a series of morphological variations and cytological aberrations occurred in radiated plants. The peak in variation frequency appeared at 35 Gy. In total, ISSR analysis produced 72 scorable bands, of which 64 (88.89%) were polymorphic. The current study demonstrated that gamma irradiation generates a sufficient number of induced mutations and that ISSR analysis offered a useful molecular marker analysis for the identification of mutants.

scholarly journals Species relationship and genetic diversity in some Iranian Lamium L. species using ISSR markers

2019 ◽  
Vol 20 (7) ◽  
Author(s):  
FATEMEH AZIMISHAD ◽  
MASOUD SHEIDAI ◽  
SAYED MEHDI TALEBI ◽  
ZAHRA NOORMOHAMMADI
Keyword(s):  
Genetic Diversity ◽  
High Efficiency ◽  
Isolation By Distance ◽  
Leaf Shape ◽  
Morphological Characteristics ◽  
Molecular Data ◽  
Issr Markers ◽  
Mantel Test ◽  
Species Relationships ◽  
Species Relationship

Abstract. Azimishad F, Sheidai M, Talebi SM, Noormohammadi Z. 2019. Species relationship and genetic diversity in some Iranian Lamium L. species using ISSR markers. Biodiversitas 20: 1963-1972. Lamium is a widespread and taxonomically complex genus of Lamiaceae which comprises of 16-38 species. This genus is represented in Iran by nine species. In the present study, we used morphological and molecular (ISSR, Cp DNA, and nrITS) data to evaluate species relationships, genetic diversity and population genetic structure of the genus. 27 morphological characteristics, including 13 qualitative and 14 quantitative, and ten ISSR markers were used for morphological and genetical evaluation of 73 accessions from eight taxa. In general, species relationships obtained from morphological and molecular data were largely congruent. In the morphological study, characteristics like the life form, leaf shape, absence/existence of bracts and shape of corolla, were distinctive traits and we did not encounter intermediate forms. Our findings indicated a very high efficiency of the ISSR markers in the identification and delimitation of Lamium species. These results confirmed the placement of L. galeobdolon in the genus Lamium and segregation of L. purpureum and L. garganicum in section Lamium. AMOVA analysis revealed that the species of this genus are genetically differentiated. Nm analysis showed very low value of gene flow among the studied species and mantel test indicated isolation by distance occurred among them.

scholarly journals Morphology and molecular characterization of Demidospermus spirophallus n. sp., D. prolixus n. sp. (Monogenea: Dactylogyridae) and a redescription of D. anus in siluriform catfish from Brazil

2017 ◽  
Vol 92 (2) ◽  
pp. 228-243 ◽  
Author(s):  
L. Franceschini ◽  
A.C. Zago ◽  
M.I. Müller ◽  
C.J. Francisco ◽  
R.M. Takemoto ◽  
...  
Keyword(s):  
Molecular Characterization ◽  
Accessory Piece ◽  
Copulatory Organ ◽  
Molecular Data ◽  
Neotropical Region ◽  
Morphological Characterization ◽  
Ribosomal Gene ◽  
Upper Paraná River Floodplain ◽  
Morphological And Molecular Data

AbstractThe present study describes Demidospermus spirophallus n. sp. and Demidospermus prolixus n. sp. (Monogenea, Dactylogyridae) from the siluriform catfish Loricaria prolixa Isbrücker & Nijssen, 1978 (Siluriformes, Loricariidae) from the state of São Paulo, Brazil, supported by morphological and molecular data. In addition, notes on the circumscription of the genus with a redescription of Demisdospermus anus are presented. Demidospermus spirophallus n. sp. differed from other congeners mainly because of the morphology of the male copulatory organ (MCO), which exhibited 2½ counterclockwise rings, a tubular accessory piece with one bifurcated end and a weakly sclerotized vagina with sinistral opening. Demidospermus prolixus n. sp. presents a counterclockwise-coiled MCO with 1½ rings, an ovate base, a non-articulated groove-like accessory piece serving as an MCO guide, two different hook shapes, inconspicuous tegumental annulations, a non-sclerotized vagina with sinistral opening and the absence of eyes or accessory eyespots. The present study provides, for the first time, molecular characterization data using the partial ribosomal gene (28S) of two new species of Demidospermus from Brazil (D. spirophallus n. sp. and D. prolixus n. sp.), and Demidospermus anus from Loricariichthys platymetopon Isbrücker & Nijssen, 1979 collected in the Upper Paraná River floodplain, Brazil. Additionally, a revision of the species composition of this genus and others that occur in catfish is proposed to elucidate problems with their circumscription. The Brazilian species of Demidospermus clustered together as sister taxa among Neotropical dactylogyrids from siluriforms. The morphological characterization of D. spirophallus n. sp. and D. prolixus n. sp., and the molecular data of the three species in the present study will extend knowledge about this monogenean genus from the Neotropical region, and provide new information for future phylogeny studies.

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