scholarly journals Draft Genome Sequence of Cellulosimicrobium Aquatile 3bp, A Glucosidase Active Bacterium and the type Strain of A Novel Species

2017 ◽  
Vol 14 (2) ◽  
pp. 783-784
Author(s):  
Vishnuvardhan Reddy Sultanpuram ◽  
Thirumala Mothe
Keyword(s):  
Genome Sequence ◽  
Type Strain ◽  
Novel Species ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Gram Stain ◽  
Protein Coding ◽  
Protein Coding Genes ◽  
Active Bacterium

ABSTRACT: A novel strain of bacterium designated as 3bp, a Gram-stain positive, non-spore forming, non-motile, yellow-pigmented, rod shaped and coccoid aerobic strain was isolated from Panagal reservoir, Nalgonda, Telangana, India, represents a novel species from the phylum Actinobacteria. Here we report the draft genome of the strain 3bp. It comprises ~ 4.31771 Mb with the G + C content of 74.73 %, and a total of 3796 protein-coding genes.

scholarly journals First Insights into the Genome Sequence of Clostridium oryzae DSM 28571, Isolated from the Soil of a Japanese Rice Field

2017 ◽  
Vol 5 (24) ◽  
Author(s):  
Anja Poehlein ◽  
Anna Lena Gippert ◽  
Maaike J. Bierenbroodspot ◽  
Rolf Daniel
Keyword(s):  
Rice Straw ◽  
Genome Sequence ◽  
Rice Field ◽  
Novel Species ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Protein Coding ◽  
Content Type ◽  
Protein Coding Genes

ABSTRACT Clostridium oryzae was originally isolated from the soil of a Japanese rice field. C. oryzae represents a novel species within the genus Clostridium and is associated with anaerobic rice straw degradation. Here, we present the draft genome sequence of C. oryzae DSM 28571 (5.076 Mbp), containing 4,590 predicted protein-coding genes.

scholarly journals Draft Genome Sequence of Streptomyces specialis Type Strain GW41-1564 (DSM 41924)

2017 ◽  
Vol 5 (13) ◽  
Author(s):  
Lotfi Loucif ◽  
Caroline Michelle ◽  
Jérôme Terras ◽  
Jean-Marc Rolain ◽  
Didier Raoult ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Type Strain ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Protein Coding ◽  
Content Type ◽  
Protein Coding Genes

ABSTRACT Here, we report the draft genome sequence of Streptomyces specialis type strain GW41-1564, which was isolated from soil. This 5.87-Mb genome exhibits a high G+C content of 72.72% and contains 5,486 protein-coding genes.

scholarly journals Elucidation of the Draft Genome Sequence of Ideonella azotifigens DSMZ21438 A Novel Aerobic Diazotroph of the Betaproteobacteria Isolated from Grass Rhizosphere Soil

2019 ◽  
Author(s):  
Richard Allen White III ◽  
Jeffrey S Norman ◽  
Emily E Mclachlan ◽  
Joseph P. Dunham ◽  
Aaron Garoutte ◽  
...  
Keyword(s):  
Nitrogen Fixation ◽  
Synthetic Biology ◽  
Genome Size ◽  
Genome Sequence ◽  
Type Strain ◽  
Rhizosphere Soil ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Protein Coding ◽  
Protein Coding Genes

Here, we report the draft genome sequence of the type strain of Ideonella azotifigens DSMZ21438T (formally 1a22T = JCM15503T). Ideonella azotifigens DSMZ21438T a novel betaproteobacterial non-symbiotic nitrogen-fixing grass rhizosphere dwelling microbe. The 891,561 paired-end shotgun reads were quality filtered and decontaminated with the ATLAS pipeline, then assembled with Unicycler. The genome size is 6,257,981 bp, an N50 size of 7,849 bp, with a G+C content of 66.71%, and with 5,882 predicted protein-coding genes. I. azotifigens DSMZ21438T represents the first member of the genus isolated from rhizosphere soil, providing a framework for further study into non-alphaproteobacterial nitrogen fixation and synthetic biology applications.

scholarly journals Draft Genome Sequence of Photorhabdus luminescens Strain DSPV002N Isolated from Santa Fe, Argentina

2016 ◽  
Vol 4 (4) ◽  
Author(s):  
Leopoldo Palma ◽  
Eleodoro E. Del Valle ◽  
Laureano Frizzo ◽  
Colin Berry ◽  
Primitivo Caballero
Keyword(s):  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Photorhabdus Luminescens ◽  
Santa Fe ◽  
Significant Similarity ◽  
Insecticidal Toxin ◽  
Protein Coding ◽  
Protein Coding Genes

Here, we report the draft genome sequence of Photorhabdus luminescens strain DSPV002N, which consists of 177 contig sequences accounting for 5,518,143 bp, with a G+C content of 42.3% and 4,701 predicted protein-coding genes (CDSs). From these, 27 CDSs exhibited significant similarity with insecticidal toxin proteins from Photorhabdus luminescens subsp. laumondii TT01.

scholarly journals Draft Genome Sequence of Phosphate-Solubilizing Bacterium Paraburkholderia tropica Strain P-31 Isolated from Pomegranate ( Punica granatum ) Rhizosphere

2016 ◽  
Vol 4 (4) ◽  
Author(s):  
Chandandeep Kaur ◽  
Govindan Selvakumar ◽  
Arakalgud Nanjundiah Ganeshamurthy
Keyword(s):  
Genome Sequence ◽  
Draft Genome ◽  
Punica Granatum ◽  
Draft Genome Sequence ◽  
Protein Coding ◽  
Protein Coding Genes ◽  
Phosphate Solubilizing

We report the 8.9 Mb draft genome sequence of phosphate-solubilizing bacterium Paraburkholderia tropica strain P-31, isolated from pomegranate ( Punica granatum ) rhizosphere. The draft genome sequence of Paraburkholderia tropica strain P-31 consists of 8,881,246 bp with a G+C content of 64.7%, 8,039 protein-coding genes, and 49 RNAs.

scholarly journals Comparative Genomics Analysis of Two Different Virulent Bovine Pasteurella multocida Isolates

2016 ◽  
Vol 2016 ◽  
pp. 1-14 ◽  
Author(s):  
Huihui Du ◽  
Rendong Fang ◽  
Tingting Pan ◽  
Tian Li ◽  
Nengzhang Li ◽  
...  
Keyword(s):  
Comparative Genomics ◽  
Genome Sequence ◽  
Pasteurella Multocida ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Insertion Sequences ◽  
Capsular Type ◽  
Protein Coding ◽  
Protein Coding Genes ◽  
Comparative Genomics Analysis

The Pasteurella multocida capsular type A isolates can cause pneumonia and bovine respiratory disease (BRD). In this study, comparative genomics analysis was carried out to identify the virulence genes in two different virulent P. multocida capsular type A isolates (high virulent PmCQ2 and low virulent PmCQ6). The draft genome sequence of PmCQ2 is 2.32 Mbp and contains 2,002 protein-coding genes, 9 insertion sequence (IS) elements, and 1 prophage region. The draft genome sequence of PmCQ6 is 2.29 Mbp and contains 1,970 protein-coding genes, 2 IS elements, and 3 prophage regions. The genome alignment analysis revealed that the genome similarity between PmCQ2 and PmCQ6 is 99% with high colinearity. To identify the candidate genes responsible for virulence, the PmCQ2 and PmCQ6 were compared together with that of the published genomes of high virulent Pm36950 and PmHN06 and avirulent Pm3480 and Pm70 (capsular type F). Five genes and two insertion sequences are identified in high virulent strains but not in low virulent or avirulent strains. These results indicated that these genes or insertion sequences might be responsible for the virulence of P. multocida, providing prospective candidates for further studies on the pathogenesis and the host-pathogen interactions of P. multocida.

scholarly journals Draft Genome Sequence of Streptomyces cavourensis YBQ59, an Endophytic Producer of Antibiotics Bafilomycin D, Nonactic Acid, Prelactone B, and 5,11-Epoxy-10-Cadinanol

2018 ◽  
Vol 7 (11) ◽  
Author(s):  
Huy Quang Nguyen ◽  
Nguyen Thi-Hanh Vu ◽  
Ha Hoang Chu ◽  
Son Ky Chu ◽  
Ha Hoang ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Draft Genome ◽  
Gc Content ◽  
Gene Clusters ◽  
Draft Genome Sequence ◽  
Biosynthetic Pathways ◽  
Protein Coding ◽  
Content Type ◽  
Protein Coding Genes

This study reports the draft genome sequence of the endophytic Streptomyces cavourensis strain YBQ59, produces the antibiotics bafilomycin D, nonactic acid, prelactone B, and 5,11-epoxy-10-cadinanol. The draft genome sequence comprises ∼10.2 Mb, with a GC content of 64% and 8,958 predicted protein-coding genes, of which 14 gene clusters were found to associate with antibiotic biosynthetic pathways.

scholarly journals Draft Genome Sequence of the Multiple Antibiotic Producer Bacillus velezensis X-BIO-1

2020 ◽  
Vol 9 (50) ◽  
Author(s):  
S. V. Kravchenko ◽  
D. V. Poshvina ◽  
A. V. Vasilchenko ◽  
A. S. Vasilchenko
Keyword(s):  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Bacillus Velezensis ◽  
Protein Coding ◽  
Content Type ◽  
Protein Coding Genes ◽  
Rna Genes

ABSTRACT Here, we describe the draft genome sequence of Bacillus velezensis strain X-BIO-1, which contains 16 contigs, comprising 3,861,135 bp with a G+C content of 46.54%. The annotated draft genome contains 3,710 protein-coding genes and 62 RNA genes. We identified genes responsible for the synthesis of various antibiotics.

scholarly journals Draft Genome Sequence of the Thermophilic Acetogen Moorella humiferrea DSM 23265

2018 ◽  
Vol 6 (17) ◽  
Author(s):  
Anja Poehlein ◽  
Alisa Keyl ◽  
Jan C. Milsch ◽  
Rolf Daniel
Keyword(s):  
Humic Acid ◽  
Genome Sequence ◽  
Draft Genome ◽  
Thermophilic Bacterium ◽  
Draft Genome Sequence ◽  
Protein Coding ◽  
Content Type ◽  
Electron Shuttling ◽  
Protein Coding Genes ◽  
Hydrothermal Spring

ABSTRACT Moorella humiferrea is an endospore-forming, anaerobic, and thermophilic bacterium which was isolated from a terrestrial hydrothermal spring. M. humiferrea is able to use humic acid or 10-anthraquinone-2,6-disulfonate as an electron-shuttling compound for growth and Fe(III) reduction. The genome has a size of 2.629 Mb and contains 2,668 predicted protein-coding genes.

scholarly journals Draft Genome Sequence of Streptococcus anginosus UMB1296, Isolated from the Female Urinary Tract

2020 ◽  
Vol 9 (20) ◽  
Author(s):  
Sara Temelkova ◽  
Taylor Miller-Ensminger ◽  
Adelina Voukadinova ◽  
Alan J. Wolfe ◽  
Catherine Putonti
Keyword(s):  
Urinary Tract ◽  
Genome Sequence ◽  
Draft Genome ◽  
Gc Content ◽  
Draft Genome Sequence ◽  
Protein Coding ◽  
Content Type ◽  
Streptococcus Anginosus ◽  
Protein Coding Genes ◽  
Female Urinary Tract

We present the draft genome sequence of a Streptococcus anginosus strain isolated from the female urinary tract. The S. anginosus UMB1296 draft genome has a size of 1,924,009 bp assembled into 35 contigs with a GC content of 38.69%. Genome annotation revealed 1,775 protein-coding genes, including several known virulence factors.

Sign in / Sign up

Export Citation Format

Share Document