Phylogenetic Analysis of The Internal Transcribed Spacer (ITS) Region in Laccase Producing Pseudomonas aeruginosa ADN04 by Predicted rRNA Secondary Structure

2014 ◽  
Vol 11 (3) ◽  
pp. 1573-1579
Author(s):  
T. Arunkumar ◽  
D. Alex Anand ◽  
G. Narendrakumar
Keyword(s):  
Pseudomonas Aeruginosa ◽  
Phylogenetic Analysis ◽  
Secondary Structure ◽  
Internal Transcribed Spacer ◽  
Its Region ◽  
Rrna Secondary Structure

scholarly journals Phylogenetic analysis of Uncaria species based on internal transcribed spacer (ITS) region and ITS2 secondary structure

2018 ◽  
Vol 56 (1) ◽  
pp. 548-558 ◽  
Author(s):  
Shuang Zhu ◽  
Qiwei Li ◽  
Shanchong Chen ◽  
Yesheng Wang ◽  
Lin Zhou ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
Secondary Structure ◽  
Internal Transcribed Spacer ◽  
Its Region ◽  
Its2 Secondary Structure

scholarly journals Three new Russula species in sect. Ingratae (Russulales, Basidiomycota) from southern China

MycoKeys ◽  
2021 ◽  
Vol 84 ◽  
pp. 103-139
Author(s):  
Guo-Jie Li ◽  
Shou-Mian Li ◽  
Bart Buyck ◽  
Shi-Yi Zhao ◽  
Xue-Jiao Xie ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
New Species ◽  
Internal Transcribed Spacer ◽  
Southern China ◽  
Its Region ◽  
Line Drawings ◽  
Phylogenetic Data ◽  
Three New Species ◽  
First Time

Three new species of Russulasection Ingratae, found in Guizhou and Jiangsu Provinces, southern China, are proposed: R. straminella, R. subpectinatoides and R. succinea. Photographs, line drawings and detailed morphological descriptions for these species are provided with comparisons against closely-related taxa. Phylogenetic analysis of the internal transcribed spacer (ITS) region supported the recognition of these specimens as new species. Additionally, R. indocatillus is reported for the first time from China and morphological and phylogenetic data are provided for the Chinese specimens.

scholarly journals Diversity of Ascomycetes Mushroom in Para Rubber Plantation, Thailand

2021 ◽  
Author(s):  
Saowapha Surawut ◽  
Sorasak Nak-aim ◽  
Chutapa Kunsook ◽  
Laddawan Kamhaengkul ◽  
Pornpimon Kanjanavas ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
Internal Transcribed Spacer ◽  
Genetic Relatedness ◽  
Sequence Similarity ◽  
Its Region ◽  
Bioactive Compound ◽  
Rubber Plantation ◽  
Mushroom Species ◽  
Reference Strains

Abstract Ascomycetes mushrooms are fungi that produce ascospores in asci and some with perithecia. Not only they have a role of decomposer in ecology but also produced some bioactive compound, anti-microbial activity, and cytotoxicity. This study aims to explore the diversity of ascomycetes mushroom species in para rubber plantations and to identify them by morphological and sequence analysis of the internal transcribed spacer (ITS) region. The results found ascomycetes mushroom consist of Trichoderma pezizoides (RP1, % identity 98.79, DQ835513.1), Daldinia eschscholtzii (RP2, % identity 100, MN310384.1), Cookeina sulcipes (RP3, % identity 98.44, KY094620.1), Cookeina garethjonesii (RP4, % identity 99.06, KY094622.1), Cookeina tricholoma (RP5, % identity 100, KY094619.1) and Xylaria terricola (RP6, % identity 88.42, MF577038.1). Most of the ascomycetes in this study have previously been described in Thailand except Xylaria terricola. Additionally, phylogenetic analysis of ascomycetes mushroom showed high genetic relatedness with reference strains. Therefore, the sequence similarity and phylogenetic analysis confirmed the identity of six ascomycetes mushroom species, and further study of bioactive compound from these mushrooms may be investigated for other applications.

Two new rock-inhabiting species of Cyphellophora from karst habitats in China

Phytotaxa ◽  
2019 ◽  
Vol 397 (1) ◽  
pp. 23
Author(s):  
WEI SUN ◽  
BINGJIE LIU ◽  
RONG FU ◽  
XINGZHONG LIU ◽  
MEICHUN XIANG
Keyword(s):  
Phylogenetic Analysis ◽  
New Species ◽  
Internal Transcribed Spacer ◽  
Large Subunit ◽  
Morphological Characteristics ◽  
Its Region ◽  
Closely Related Species ◽  
Two New Species ◽  
Rock Inhabiting Fungi ◽  
Karst Habitats

During survey on rock-inhabiting fungi from karst habitats in Guizhou, China, two new species in Cyphellophora were discovered and identified. Phylogenetic analysis based on combined sequences of the nuclear large subunit (nucLSU) and internal transcribed spacer (ITS) region of ribosomal DNA revealed that the tested isolates, clustered into two clades that well affiliated in the genus of Cyphellophora. Morphological characteristics were also supported the estabolishment of the new species. Herewith Cyphellophora botryose sp. nov. and Cyphellophora guizhouensis sp. nov. were described and their differences from closely related species were discussed.

Infundibulicybe macrospora sp. nov., a new and noteworthy species from Himalayan moist temperate forests of Pakistan

Phytotaxa ◽  
2020 ◽  
Vol 452 (4) ◽  
pp. 268-277
Author(s):  
MUHAMMAD ALI ◽  
JUNAID KHAN ◽  
HIRA BASHIR ◽  
ABDUL REHMAN NIAZI ◽  
HASSAN SHER ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
New Species ◽  
Internal Transcribed Spacer ◽  
Temperate Forests ◽  
Its Region ◽  
Molecular Phylogenetic Analysis ◽  
Molecular Phylogenetic ◽  
A New Species ◽  
Reddish Orange ◽  
Light Orange

Infundibulicybe macrospora, a new species, is described and illustrated from the Himalayan moist temperate forests of Pakistan. The new species can be differentiated from close allies by its reddish orange to light orange pileus, whitish lamellae and stipe, and larger and broader basidiospores. The new species is also supported by molecular phylogenetic analysis inferred from internal transcribed spacer (ITS) region.

scholarly journals Cortinarius gueneri: A new species from the Euro-Siberian Floristic Region of Turkey

Karstenia ◽  
2021 ◽  
pp. 46-54
Author(s):  
Ertugrul Sesli
Keyword(s):  
Phylogenetic Analysis ◽  
New Species ◽  
Internal Transcribed Spacer ◽  
Its Region ◽  
Molecular Data ◽  
Full Description ◽  
Short Discussion ◽  
Morphological And Molecular Data ◽  
A New Species

<em>Cortinarius gueneri</em> (subgen. <em>Telamonia</em> sect. <em>Laeti</em>) is described as a new species from Turkey based on morphological and molecular data. It can be recognized by the somewhat irregular conical to campanulate, translucent-striate, rusty brown pileus; pale yellowish to cinnamon brown broadly attached lamellae; pale salmon to pinkish brown stipe; narrowly amygdaloid to ellipsoid basidiospores; and its putative association with <em>Carpinus orientalis</em>. Full description of the new species is given with field photos, microscopic illustrations, and a short discussion. Phylogenetic analysis of the internal transcribed spacer (ITS) region is also provided.

scholarly journals Secondary Structure of the Ribosomal Internal Transcribed Spacer (ITS) Region of Hypsizygus marmoreus

2013 ◽  
Vol 23 (10) ◽  
pp. 1260-1266
Author(s):  
Ju-Ri Woo ◽  
Hyeokjun Yoon ◽  
Young-Hyun You ◽  
Chang-Yun Lee ◽  
Won-Sik Kong ◽  
...  
Keyword(s):  
Secondary Structure ◽  
Internal Transcribed Spacer ◽  
Its Region ◽  
Hypsizygus Marmoreus

Three new species of Calocybella from India based on morphology and molecular phylogeny

Phytotaxa ◽  
2016 ◽  
Vol 255 (2) ◽  
pp. 133 ◽  
Author(s):  
K. P. DEEPNA LATHA ◽  
K. N. ANIL RAJ ◽  
THUSHARA CHEROLIL ◽  
SHAHINA A. SHARAFUDHEEN ◽  
PATINJAREVEETTIL MANIMOHAN
Keyword(s):  
Phylogenetic Analysis ◽  
New Species ◽  
Molecular Phylogeny ◽  
Internal Transcribed Spacer ◽  
Large Subunit ◽  
Its Region ◽  
First Record ◽  
Three New Species ◽  
Kerala State ◽  
Blastn Search

Three new species of Calocybella, C. lohitha, C. babruka and C. swetha are described from Kerala State, India based on morphology and molecular phylogeny. Comprehensive descriptions of these species are provided along with photo-illustrations and comparisons with phenetically similar and phylogenetically related species. Nuclear ribosomal internal transcribed spacer (ITS) region of the three species were sequenced and analyzed. In addition, nuclear ribosomal large subunit (nrLSU) region of Calocybella swetha was sequenced and used in BLASTn search to find similar sequences. ITS-based phylogenetic analysis using Maximum likelihood (ML) method supported both the novelty of these species and their placement within the genus. The discovery of these three species forms the first record of Calocybella outside Europe.

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