scholarly journals Geometrical Conversion of the EGFR Extracellular Domain by Adiabatic Mapping Combining Normal Mode Analysis of the Elastic Network Model and Energy Optimization

2019 ◽  
Vol 67 (10) ◽  
pp. 1061-1071
Author(s):  
Hiroyuki Nojima ◽  
Yasuomi Kiyota ◽  
Genki Terashi ◽  
Mayuko Takeda-Shitaka ◽  
Hajime Matsubara
Keyword(s):  
Normal Mode ◽  
Network Model ◽  
Normal Mode Analysis ◽  
Energy Optimization ◽  
Extracellular Domain ◽  
Mode Analysis ◽  
Elastic Network Model ◽  
Elastic Network

A complex multiscale virtual particle model based elastic network model (CMVP-ENM) for the normal mode analysis of biomolecular complexes

2019 ◽  
Vol 21 (8) ◽  
pp. 4359-4366 ◽  
Author(s):  
D. Vijay Anand ◽  
Zhenyu Meng ◽  
Kelin Xia
Keyword(s):  
Normal Mode ◽  
Network Model ◽  
Material Properties ◽  
Normal Mode Analysis ◽  
Mode Analysis ◽  
Particle Model ◽  
Elastic Network Model ◽  
Elastic Network ◽  
Virtual Particle ◽  
Biomolecular Complexes

The CMVP-ENM for virus normal mode analysis. With a special ratio parameter, CMVP-ENM can characterize the multi-material properties of biomolecular complexes and systematically enhance or suppress the modes for different components.

scholarly journals Multiscale virtual particle based elastic network model (MVP-ENM) for normal mode analysis of large-sized biomolecules

2018 ◽  
Vol 20 (1) ◽  
pp. 658-669 ◽  
Author(s):  
Kelin Xia
Keyword(s):  
Normal Mode ◽  
Network Model ◽  
Normal Mode Analysis ◽  
Mode Analysis ◽  
Elastic Network Model ◽  
Elastic Network ◽  
Virtual Particle

In this paper, a multiscale virtual particle based elastic network model (MVP-ENM) is proposed for the normal mode analysis of large-sized biomolecules.

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