scholarly journals EmrE, the smallest ion-coupled transporter, provides a unique paradigm for structure-function studies.

1997 ◽  
Vol 200 (2) ◽  
pp. 335-341
Author(s):  
S Schuldiner ◽  
M Lebendiker ◽  
H Yerushalmi
Keyword(s):  
Functional Form ◽  
Amide Proton ◽  
Multidrug Transporter ◽  
Hydrogen Ions ◽  
Transmembrane Helices ◽  
Wild Type ◽  
Infrared Measurements ◽  
Highly Hydrophobic ◽  
Negative Dominance ◽  
Hydrophobicity Analysis

EmrE is an Escherichia coli multidrug transporter which confers resistance to a wide variety of toxicants by actively removing them in exchange for hydrogen ions. EmrE is a highly hydrophobic 12 kDa protein which has been purified by taking advantage of its unique solubility in organic solvents. After solubilization and purification, the protein retains its ability to transport as judged from the fact that it can be reconstituted in a functional form. Hydrophobicity analysis of the sequence yielded four putative transmembrane domains of similar sizes. Results from transmission Fourier transform infrared measurements agree remarkably well with this hypothesis and yielded alpha-helical estimates of 78% and 80% for EmrE in CHCl3:MeOH and 1,2-dimyristoyl phosphocholine, respectively. Furthermore, the fact that most of the amide groups in the protein do not undergo amide-proton H/D exchange implies that most (approximately 80%) of the residues are embedded in the bilayer. These observations are only consistent with four transmembrane helices. A domain lined by Cys41 and Cys95 accessible only to substrates such as the organic mercurial 4-(chloromercuri)benzoic acid has been identified. Both residues are asymmetric in their location with respect to the plane of the membrane, Cys95 being closer than Cys41 to the outside face of the membrane. In co-reconstitution experiments of wild-type protein with three different inactive mutants, negative dominance has been observed. This phenomenon suggests that EmrE is functional as a homo-oligomer.

scholarly journals The single transmembrane segment of gp210 is sufficient for sorting to the pore membrane domain of the nuclear envelope.

1992 ◽  
Vol 119 (6) ◽  
pp. 1441-1449 ◽  
Author(s):  
R W Wozniak ◽  
G Blobel
Keyword(s):  
Nuclear Envelope ◽  
Nuclear Pore Complex ◽  
Immunofluorescence Microscopy ◽  
Nuclear Pore ◽  
Transmembrane Helices ◽  
Wild Type ◽  
Transmembrane Segment ◽  
Membrane Domain ◽  
3T3 Cells ◽  
Type Mutant

The glycoprotein gp210 is located in the "pore membrane," a specialized domain of the nuclear envelope to which the nuclear pore complex (NPC) is anchored. gp210 contains a large cisternal domain, a single transmembrane segment (TM), and a COOH-terminal, 58-amino acid residue cytoplasmic tail (CT) (Wozniak, R. W., E. Bartnik, and G. Blobel. 1989. J. Cell Biol. 108:2083-2092; Greber, U. F., A. Senior, and L. Gerace. 1990. EMBO (Eur. Mol. Biol. Organ.) J. 9:1495-1502). To locate determinants for sorting of gp210 to the pore membrane, we constructed various cDNAs coding for wild-type, mutant, and chimeric gp210, and monitored localization of the expressed protein in 3T3 cells by immunofluorescence microscopy using appropriate antibodies. The large cisternal domain of gp210 (95% of its mass) did not reveal any sorting determinants. Surprisingly, the TM of gp210 is sufficient for sorting to the pore membrane. The CT also contains a sorting determinant, but it is weaker than that of the TM. We propose specific lateral association of the transmembrane helices of two proteins to yield either a gp210 homodimer or a heterodimer of gp210 and another protein. The cytoplasmically oriented tails of these dimers may bind cooperatively to the adjacent NPCs. In addition, we demonstrate that gp210 co-localizes with cytoplasmically dispersed nucleoporins, suggesting a cytoplasmic association of these components.

scholarly journals Multiple Novel Inhibitors of the NorA Multidrug Transporter of Staphylococcus aureus

1999 ◽  
Vol 43 (10) ◽  
pp. 2404-2408 ◽  
Author(s):  
Penelope N. Markham ◽  
Eric Westhaus ◽  
Katya Klyachko ◽  
Michael E. Johnson ◽  
Alex A. Neyfakh
Keyword(s):  
Staphylococcus Aureus ◽  
Clinical Setting ◽  
In Vitro Selection ◽  
Antibacterial Activities ◽  
Multidrug Transporter ◽  
Wild Type ◽  
Chemical Library ◽  
Fluoroquinolone Antibiotics

ABSTRACT The multidrug transporter NorA contributes to the resistance ofStaphylococcus aureus to fluoroquinolone antibiotics by promoting their active extrusion from the cell. Previous studies with the alkaloid reserpine, the first identified inhibitor of NorA, indicate that the combination of a chemical NorA inhibitor with a fluoroquinolone could improve the efficacy of this class of antibiotics. Since reserpine is toxic to humans at the concentrations required to inhibit NorA, we sought to identify new inhibitors of NorA that may be used in a clinical setting. Screening of a chemical library yielded a number of structurally diverse inhibitors of NorA that were more potent than reserpine. The new inhibitors act in a synergistic manner with the most widely used fluoroquinolone, ciprofloxacin, by substantially increasing its activity against both NorA-overexpressing and wild-type S. aureus isolates. Furthermore, the inhibitors dramatically suppress the emergence of ciprofloxacin-resistant S. aureus upon in vitro selection with this drug. Some of these new inhibitors, or their derivatives, may prove useful for augmentation of the antibacterial activities of fluoroquinolones in the clinical setting.

scholarly journals The γ-tubulin complex protein GCP6 is crucial for spindle morphogenesis but not essential for microtubule reorganization inArabidopsis

2019 ◽  
Vol 116 (52) ◽  
pp. 27115-27123 ◽  
Author(s):  
Huiying Miao ◽  
Rongfang Guo ◽  
Junlin Chen ◽  
Qiaomei Wang ◽  
Yuh-Ru Julie Lee ◽  
...  
Keyword(s):  
Arabidopsis Thaliana ◽  
Vegetative Growth ◽  
Functional Form ◽  
Plant Cells ◽  
Wild Type ◽  
Gene Encoding ◽  
Small Complex ◽  
Complex Protein ◽  
Ring Complex ◽  
Insight Into

γ-Tubulin typically forms a ring-shaped complex with 5 related γ-tubulin complex proteins (GCP2 to GCP6), and this γ-tubulin ring complex (γTuRC) serves as a template for microtubule (MT) nucleation in plants and animals. While the γTuRC takes part in MT nucleation in most eukaryotes, in fungi such events take place robustly with just the γ-tubulin small complex (γTuSC) assembled by γ-tubulin plus GCP2 and GCP3. To explore whether the γTuRC is the sole functional γ-tubulin complex in plants, we generated 2 mutants of theGCP6gene encoding the largest subunit of the γTuRC inArabidopsis thaliana. Both mutants showed similar phenotypes of dwarfed vegetative growth and reduced fertility. Thegcp6mutant assembled the γTuSC, while the wild-type cells had GCP6 join other GCPs to produce the γTuRC. Although thegcp6cells had greatly diminished γ-tubulin localization on spindle MTs, the protein was still detected there. Thegcp6cells formed spindles that lacked MT convergence and discernable poles; however, they managed to cope with the challenge of MT disorganization and were able to complete mitosis and cytokinesis. Our results reveal that the γTuRC is not the only functional form of the γ-tubulin complex for MT nucleation in plant cells, and that γ-tubulin-dependent, but γTuRC-independent, mechanisms meet the basal need of MT nucleation. Moreover, we show that the γTuRC function is more critical for the assembly of spindle MT array than for the phragmoplast. Thus, our findings provide insight into acentrosomal MT nucleation and organization.

scholarly journals Identification of a minimal transforming domain of p53: negative dominance through abrogation of sequence-specific DNA binding.

1992 ◽  
Vol 12 (12) ◽  
pp. 5581-5592 ◽  
Author(s):  
E Shaulian ◽  
A Zauberman ◽  
D Ginsberg ◽  
M Oren
Keyword(s):  
Dna Binding ◽  
Point Mutation ◽  
P53 Gene ◽  
Dominant Negative ◽  
Mutant P53 ◽  
Wild Type ◽  
Transforming Activity ◽  
Wild Type P53 ◽  
Negative Dominance

Mutations in the p53 gene are most frequent in cancer. Many p53 mutants possess transforming activity in vitro. In cells transformed by such mutants, the mutant protein is oligomerized with endogenous cell p53. To determine the relevance of oligomerization for transformation, miniproteins containing C-terminal portions of p53 were generated. These miniproteins, although carrying no point mutation, transformed at least as efficiently as full-length mutant p53. Transforming activity was coupled with the ability to oligomerize with wild-type p53, as well as with the ability to abrogate sequence-specific DNA binding by coexpressed wild-type p53. These findings suggest that p53-mediated transformation may operate through a dominant negative mechanism, involving the generation of DNA binding-incompetent oligomers.

scholarly journals Identification of ccdA inParacoccus pantotrophus GB17: Disruption ofccdA Causes Complete Deficiency inc-Type Cytochromes

2001 ◽  
Vol 183 (1) ◽  
pp. 257-263 ◽  
Author(s):  
Frank Bardischewsky ◽  
Cornelius G. Friedrich
Keyword(s):  
Sulfur Oxidation ◽  
Open Reading Frames ◽  
Redox Mediators ◽  
Transmembrane Helices ◽  
Wild Type ◽  
Structural Identity ◽  
Paracoccus Pantotrophus ◽  
Type Gene ◽  
Extension Analysis ◽  
Reading Frames

ABSTRACT A transposon Tn5-mob insertional mutant ofParacoccus pantotrophus GB17, strain TP43, was unable to oxidize thiosulfate aerobically or to reduce nitrite anaerobically, and the cellular yields were generally decreased by 11 to 20%. Strain TP43 was unable to form functional c-type cytochromes, as determined by difference spectroscopy and heme staining. However, formation of apocytochromes and their transport to the periplasm were not affected, as seen with SoxD, a c-type cytochrome associated with the periplasmic sulfite dehydrogenase homologue. The Tn5-mob-containing DNA region of strain TP43 was cloned into pSUP205 to produce pE18TP43. With the aid of pE18TP43 the corresponding wild-type gene region of 15 kb was isolated from a heterogenote recombinant to produce pEF15. Sequence analysis of 2.8 kb of the relevant region uncovered three open reading frames, designated ORFA, ccdA, and ORFB, with the latter being oriented divergently. ORFA and ccdA were constitutively cotranscribed as determined by primer extension analysis. In strain TP43 Tn5-mob was inserted into ccdA. The deduced ORFA product showed no similarity to any protein in databases. However, the ccdA gene product exhibited similarities to proteins assigned to different functions in bacteria, such as cytochrome c biogenesis. For these proteins at least six transmembrane helices are predicted with the potential to form a channel with two conserved cysteines. This structural identity suggests that these proteins transfer reducing equivalents from the cytoplasm to the periplasm and that the cysteines bring about this transfer to enable the various specific functions via specific redox mediators such as thioredoxins. CcdA of P. pantotrophus is 42% identical to a protein predicted by ORF2, and its location within thesox gene cluster coding for lithotrophic sulfur oxidation suggested a different function.

scholarly journals Intergenic Suppression between the Flagellar MS Ring Protein FliF of Salmonella and FlhA, a Membrane Component of Its Export Apparatus

2001 ◽  
Vol 183 (5) ◽  
pp. 1655-1662 ◽  
Author(s):  
May Kihara ◽  
Tohru Minamino ◽  
Shigeru Yamaguchi ◽  
Robert M. Macnab
Keyword(s):  
Amino Acid ◽  
Amino Acid Level ◽  
Rare Event ◽  
Amino Acid Position ◽  
Partial Recovery ◽  
Wild Type ◽  
Membrane Domain ◽  
Flagellar Assembly ◽  
Negative Dominance ◽  
Region Ii

ABSTRACT The MS ring of the flagellar basal body of Salmonellais an integral membrane structure consisting of about 26 subunits of a 61-kDa protein, FliF. Out of many nonflagellate fliFmutants tested, three gave rise to intergenic suppressors in flagellar region II. The pseudorevertants swarmed, though poorly; this partial recovery of motile function was shown to be due to partial recovery of export function and flagellar assembly. The three parental mutants were all found to carry the same mutation, a six-base deletion corresponding to loss of Ala-174 and Ser-175 in the predicted periplasmic domain of the FliF protein. The 19 intergenic suppressors identified all lay inflhA, and they consisted of 10 independent examples at the nucleotide level or 9 at the amino acid level. Since two of the nine corresponded to different substitutions at the same amino acid position, only eight positions in the FlhA protein have given rise to suppressors. Thus, FliF-FlhA intergenic suppression is a fairly rare event. FlhA is a component of the flagellar protein export apparatus, with an integral membrane domain encompassing the N-terminal half of the sequence and a cytoplasmic C-terminal domain. All of the suppressing mutations lay within the integral membrane domain. These mutations, when placed in a wild-type fliF background, had no mutant phenotype. In the fliF mutant background, mutant FlhA was dominant, yielding a pseudorevertant phenotype. Wild-type FlhA did not exert significant negative dominance in the pseudorevertant background, indicating that it does not compete effectively with mutant FlhA for interaction with mutant FliF. Mutant FliF was partially dominant over wild-type FliF in both the wild-type and second-site FlhA backgrounds. Membrane fractionation experiments indicated that thefliF mutation, though preventing export, was mild enough to permit assembly of the MS ring itself, and also assembly of the cytoplasmic C ring onto the MS ring. The data from this study provide genetic support for a model in which at least the FlhA component of the export apparatus physically interacts with the MS ring within which it is housed.

scholarly journals Incomplete distal renal tubular acidosis from a heterozygous mutation of the V-ATPase B1 subunit

2014 ◽  
Vol 307 (9) ◽  
pp. F1063-F1071 ◽  
Author(s):  
Jianning Zhang ◽  
Daniel G. Fuster ◽  
Mary Ann Cameron ◽  
Henry Quiñones ◽  
Carolyn Griffith ◽  
...  
Keyword(s):  
Plasma Membrane ◽  
Renal Tubular Acidosis ◽  
Distal Renal Tubular Acidosis ◽  
Heterozygous Mutation ◽  
Wild Type ◽  
Urine Ph ◽  
293 Cells ◽  
Heterozygous Carriers ◽  
Renal Tubular ◽  
Negative Dominance

Congenital distal renal tubular acidosis (RTA) from mutations of the B1 subunit of V-ATPase is considered an autosomal recessive disease. We analyzed a distal RTA kindred with a truncation mutation of B1 (p.Phe468fsX487) previously shown to have failure of assembly into the V1domain of V-ATPase. All heterozygous carriers in this kindred have normal plasma HCO3−concentrations and thus evaded the diagnosis of RTA. However, inappropriately high urine pH, hypocitraturia, and hypercalciuria were present either individually or in combination in the heterozygotes at baseline. Two of the heterozygotes studied also had inappropriate urinary acidification with acute ammonium chloride loading and an impaired urine-blood Pco2gradient during bicarbonaturia, indicating the presence of a H+gradient and flux defects. In normal human renal papillae, wild-type B1 is located primarily on the plasma membrane, but papilla from one of the heterozygote who had kidney stones but not nephrocalcinosis showed B1 in both the plasma membrane as well as diffuse intracellular staining. Titration of increasing amounts of the mutant B1 subunit did not exhibit negative dominance over the expression, cellular distribution, or H+pump activity of wild-type B1 in mammalian human embryonic kidney-293 cells and in V-ATPase-deficient Saccharomyces cerevisiae. This is the first demonstration of renal acidification defects and nephrolithiasis in heterozygous carriers of a mutant B1 subunit that cannot be attributable to negative dominance. We propose that heterozygosity may lead to mild real acidification defects due to haploinsufficiency. B1 heterozygosity should be considered in patients with calcium nephrolithiasis and urinary abnormalities such as alkalinuria or hypocitraturia.

scholarly journals Identification of Two New Proteins in Spermidine Nucleoids Isolated from Escherichia coli

1999 ◽  
Vol 181 (12) ◽  
pp. 3842-3844 ◽  
Author(s):  
Lizabeth D. Murphy ◽  
Judah L. Rosner ◽  
Steven B. Zimmerman ◽  
Dominic Esposito
Keyword(s):  
Escherichia Coli ◽  
Functional Form ◽  
Dnase I ◽  
Gram Negative Bacteria ◽  
Wild Type ◽  
Gram Negative ◽  
Form Analysis ◽  
E Coli ◽  
Amino Terminal

ABSTRACT The Escherichia coli nucleoid contains DNA in a condensed but functional form. Analysis of proteins released from isolated spermidine nucleoids after treatment with DNase I reveals significant amounts of two proteins not previously detected in wild-type E. coli. Partial amino-terminal sequencing has identified them as the products of rdgC andyejK. These proteins are strongly conserved in gram-negative bacteria, suggesting that they have important cellular roles.

scholarly journals Lipid Composition Regulates the Orientation of Transmembrane Helices in HorA, an ABC Multidrug Transporter

2010 ◽  
Vol 285 (19) ◽  
pp. 14144-14151 ◽  
Author(s):  
Adelin Gustot ◽  
Smriti ◽  
Jean-Marie Ruysschaert ◽  
Hassane Mchaourab ◽  
Cédric Govaerts
Keyword(s):  
Lipid Composition ◽  
Multidrug Transporter ◽  
Transmembrane Helices

scholarly journals Apparent involvement of a multidrug transporter in the fluoroquinolone resistance of Streptococcus pneumoniae.

1997 ◽  
Vol 41 (6) ◽  
pp. 1396-1398 ◽  
Author(s):  
N N Baranova ◽  
A A Neyfakh
Keyword(s):  
Streptococcus Pneumoniae ◽  
Ethidium Bromide ◽  
Fluoroquinolone Resistance ◽  
Cross Resistance ◽  
Multidrug Transporter ◽  
Wild Type ◽  
Gram Positive ◽  
Gram Positive Bacteria ◽  
Energy Dependent

A Streptococcus pneumoniae strain selected for resistance to ethidium bromide demonstrated enhanced energy-dependent efflux of this toxic dye. Both the ethidium resistance and the ethidium efflux could be inhibited by the plant alkaloid reserpine. The ethidium-selected cells demonstrated cross-resistance to the fluoroquinolones norfloxacin and ciprofloxacin; this resistance could also be completely reversed by reserpine. Furthermore, reserpine potentiated the susceptibility of wild-type S. pneumoniae to fluoroquinolones and ethidium. The most plausible explanation for these results is that S. pneumoniae, like some other gram-positive bacteria, expresses a reserpine-sensitive multidrug transporter, which may play an important role in both intrinsic and acquired resistances of this pathogen to fluoroquinolone therapy.

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