scholarly journals Comparative environmental genomics in non-model species: using heterologous hybridization to DNA-based microarrays

2007 ◽  
Vol 210 (9) ◽  
pp. 1602-1606 ◽  
Author(s):  
B. A. Buckley
Keyword(s):  
Model Species ◽  
Heterologous Hybridization ◽  
Environmental Genomics

scholarly journals Genomics in the ecological arena

2010 ◽  
Vol 7 (1) ◽  
pp. 2-3 ◽  
Author(s):  
Luisa Orsini ◽  
Ellen Decaestecker ◽  
Luc De Meester ◽  
Michael E. Pfrender ◽  
John K. Colbourne
Keyword(s):  
Model System ◽  
Model Organisms ◽  
Meeting Report ◽  
Model Species ◽  
Environmental Genomics ◽  
Large Community ◽  
Genomic Tools ◽  
The Times ◽  
First Time ◽  
European University

This meeting report presents the cutting-edge research that is developing around the waterflea Daphnia , an emerging model system in environmental genomics. Daphnia has been a model species in ecology, toxicology and evolution for many years and is supported by a large community of ecologists, evolutionary biologists and ecotoxicologists. Thanks to new advances in genomics and transciptomics and to the sustained efforts of the Daphnia Genomics Consortium (DGC), Daphnia is also rapidly developing as a model system in environmental genomics. Advances in this emerging field were presented at the DGC 2010, held for the first time in a European University. During the meeting, a plethora of elegant studies were presented on the mechanisms of responses to environmental challenges using recently developed genomic tools. The DGC 2010 is a concrete example of the new trends in ecology and evolution. The times are mature for the application of innovative genomic and transcriptomic tools for studies of environmental genomics in non-model organisms.

scholarly journals Transcriptome analysis in non-model species: a new method for the analysis of heterologous hybridization on microarrays

BMC Genomics ◽  
2010 ◽  
Vol 11 (1) ◽  
pp. 344 ◽  
Author(s):  
Cyril Degletagne ◽  
Céline Keime ◽  
Benjamin Rey ◽  
Marc de Dinechin ◽  
Fabien Forcheron ◽  
...  
Keyword(s):  
Transcriptome Analysis ◽  
New Method ◽  
Model Species ◽  
Heterologous Hybridization

Phylogeny of actin and tubulin gene homologs in diverse eukaryotic species

2019 ◽  
Vol 79 (01S) ◽  
Author(s):  
Pawan Kumar Jayaswal ◽  
Asheesh Shanker ◽  
Nagendra Kumar Singh
Keyword(s):  
Evolutionary Relationship ◽  
Genomic Data ◽  
Gene Clusters ◽  
Species Trees ◽  
Model Species ◽  
Tubulin Gene ◽  
Tubulin Genes ◽  
Eukaryotic Species ◽  
Relationship Of ◽  
Insight Into

Actin and tubulin are cytoskeleton proteins, which are important components of the celland are conserved across species. Despite their crucial significance in cell motility and cell division the distribution and phylogeny of actin and tubulin genes across taxa is poorly understood. Here we used publicly available genomic data of 49 model species of plants, animals, fungi and Protista for further understanding the distribution of these genes among diverse eukaryotic species using rice as reference. The highest numbers of rice actin and tubulin gene homologs were present in plants followed by animals, fungi and Protista species, whereas ten actin and nine tubulin genes were conserved in all 49 species. Phylogenetic analysis of 19 actin and 18 tubulin genes clustered them into four major groups each. One each of the actin and tubulin gene clusters was conserved across eukaryotic species. Species trees based on the conserved actin and tubulin genes showed evolutionary relationship of 49 different taxa clustered into plants, animals, fungi and Protista. This study provides a phylogenetic insight into the evolution of actin and tubulin genes in diverse eukaryotic species.

scholarly journals Embryonic development of the fire-eye-tetra Moenkhausia oligolepis (Characiformes: Characidae)

Zygote ◽  
2021 ◽  
pp. 1-5
Author(s):  
Raquel Santos dos Santos ◽  
Jeane Rodrigues Rodrigues ◽  
Jhennifer Gomes Cordeiro ◽  
Hadda Tercya ◽  
Marissol Leite ◽  
...  
Keyword(s):  
Embryonic Development ◽  
Germ Cell ◽  
Cell Transplantation ◽  
Species Conservation ◽  
Biotechnological Applications ◽  
Model Species ◽  
Phylogenetic Classification ◽  
Laboratory Conditions ◽  
Adhesive Surface ◽  
Taxonomic Studies

Summary This study describes the embryonic development of Moenkhausia oligolepis in laboratory conditions. After fertilization, the embryos were collected every 10 min up to 2 h, then every 20 min up to 4 h, and afterwards every 30 min until hatching. The fertilized eggs of M. oligolepis measured approximately 0.85 ± 0.5 mm and had an adhesive surface. Embryonic development lasted 14 h at 25ºC through the zygote, cleavage, blastula, gastrula, neurula, and segmentation phases. Hatching occurred in embryos around the 30-somites stage. The present results contribute only the second description of embryonic development to a species from the Moenkhausia genus, being also the first for this species. Such data are of paramount importance considering the current conflicting state of this genus phylogenetic classification and may help taxonomic studies. Understanding the biology of a species that is easily managed in laboratory conditions and has an ornamental appeal may assist studies in its reproduction to both supply the aquarium market and help the species conservation in nature. Moreover, these data enable the use of M. oligolepis as a model species in biotechnological applications, such as the germ cell transplantation approach.

scholarly journals Accumulation and Phytotoxicity of Two Commercial Biocides in the Lichen Evernia prunastri and the Moss Brachythecium sp.

Stresses ◽  
2021 ◽  
Vol 1 (2) ◽  
pp. 69-77
Author(s):  
Andrea Vannini ◽  
Giulia Canali ◽  
Sergio Enrico Favero-Longo ◽  
Stefano Loppi
Keyword(s):  
Benzalkonium Chloride ◽  
Photosynthetic Apparatus ◽  
Model Species ◽  
Evernia Prunastri ◽  
Active Compounds ◽  
Severe Impairment ◽  
Over Time

This study investigated the accumulation and phytotoxicity of two commercial biocides widely used for the removal of biological colonization from monuments, namely Biotin T® (3%) and Preventol RI80® (2%), on lichen and moss model species, specifically, Evernia prunastri and Brachythecium sp. The active compounds, benzalkonium chloride (BAC) for Preventol RI80 and isothiazolinone (OIT) for Biotin T, were accumulated in similar amounts in both species without significant changes for up to 21 days. Both compounds caused a severe impairment of the photosynthetic apparatus of these species, without any recovery over time, although Biotin T showed a faster and stronger action, and the moss was more sensitive than the lichen. By shedding light on the accumulation of BAC and OIT in lichens and mosses and quantifying their effectiveness to photosynthetically devitalize these organisms, the obtained results are a useful comparison for the implementation of green alternative products for the control of biodeteriogens.

scholarly journals Lack of Linkages among Fruiting Depth, Weight, and Maturity in Irrigated Truffle Fungi Marks the Complexity of Relationships among Morphogenetic Stages

2021 ◽  
Vol 7 (2) ◽  
pp. 102
Author(s):  
Sergi Garcia-Barreda ◽  
Sergio Sánchez ◽  
Pedro Marco ◽  
Gian Maria Niccolò Benucci ◽  
Vicente González
Keyword(s):  
Quality Management ◽  
Path Analysis ◽  
Ectomycorrhizal Fungi ◽  
Formation Process ◽  
Positive Relationship ◽  
Tuber Melanosporum ◽  
Model Species ◽  
Black Truffle ◽  
Development Stages ◽  
Cultivation Practices

The highly prized black truffle (Tuber melanosporum) has become a model species for ectomycorrhizal fungi biology. However, several questions concerning its reproductive phase remain unanswered. To provide new hypotheses on the fruitbody formation process, we have explored the causal links among development characters of black truffle fruitbodies that are primarily linked to either the mating process, fruitbody growing stage, or maturation. Path analysis was applied to test causal models outlining the relationships among fruitbody development characters such as fruiting depth, weight, shape, and spore maturity. These characters were investigated over a two-season survey and three soil typologies (plus peat-based substrate) under irrigated conditions. We found a clear and generalized relationship between fruitbody weight and shape. Among clusters of fruitbodies we found a positive relationship between the weight of the largest fruitbody and the weight of the remaining fruitbodies. However, no generalized relationships among characters linked to different development stages appeared. Our results were noticeably consistent across soil typologies, both for fruitbodies growing singly and in clusters, indicating that early-developing fruitbody characters did not influence characters linked to subsequent morphogenetic stages. The lack of links among stages opens new perspectives for pre-harvest quality management with stage-specific cultivation practices.

scholarly journals Special Issue: Genetic Basis of Phenotypic Variation in Drosophila and Other Insects

Genes ◽  
2021 ◽  
Vol 12 (8) ◽  
pp. 1212
Author(s):  
J. Spencer Johnston ◽  
Carl E. Hjelmen
Keyword(s):  
Next Generation Sequencing ◽  
Genetic Basis ◽  
Genomic Sequence ◽  
Sequence Data ◽  
Complete Genomic Sequence ◽  
Special Issue ◽  
Model Species ◽  
Road Map ◽  
Generation Sequencing ◽  
Complete Genomic

Next-generation sequencing provides a nearly complete genomic sequence for model and non-model species alike; however, this wealth of sequence data includes no road map [...]

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