scholarly journals The NK-2 class homeodomain factor CEH-51 and the T-box factor TBX-35 have overlapping function in C. elegans mesoderm development

Development ◽  
2009 ◽  
Vol 136 (16) ◽  
pp. 2735-2746 ◽  
Author(s):  
G. Broitman-Maduro ◽  
M. Owraghi ◽  
W. W. K. Hung ◽  
S. Kuntz ◽  
P. W. Sternberg ◽  
...  
Keyword(s):  
T Box ◽  
2021 ◽  
Author(s):  
Jonathan D Rumley ◽  
Elicia A Preston ◽  
Dylan Cook ◽  
Felicia L Peng ◽  
Amanda L Zacharias ◽  
...  

Patterning of the anterior-posterior axis is fundamental to animal development. The Wnt pathway plays a major role in this process by activating the expression of posterior genes in animals from worms to humans. This observation raises the question of whether the Wnt pathway or other regulators control the expression of the many anterior-expressed genes. We found that the expression of five anterior-specific genes in Caenorhabditis elegans embryos depends on the Wnt pathway effectors pop-1/TCF and sys-1/β-catenin. We focused further on one of these anterior genes, ref-2/ZIC, a conserved transcription factor expressed in multiple anterior lineages. Live imaging of ref-2 mutant embryos identified defects in cell division timing and position in anterior lineages. Cis-regulatory dissection identified three ref-2 transcriptional enhancers, one of which is necessary and sufficient for anterior-specific expression. This enhancer is activated by the T-box transcription factors TBX-37 and TBX-38, and surprisingly, concatemerized TBX-37/38 binding sites are sufficient to drive anterior-biased expression alone, despite the broad expression of TBX-37 and TBX-38. Taken together, our results highlight the diverse mechanisms used to regulate anterior expression patterns in the embryo.


2008 ◽  
Vol 317 (2) ◽  
pp. 695-704 ◽  
Author(s):  
Peter J. Appleford ◽  
Maria Gravato-Nobre ◽  
Toby Braun ◽  
Alison Woollard
Keyword(s):  
T Box ◽  

2011 ◽  
Vol 356 (1) ◽  
pp. 261
Author(s):  
Paul Huber ◽  
Tanya Crum ◽  
Peter Okkema
Keyword(s):  
T Box ◽  

eLife ◽  
2015 ◽  
Vol 4 ◽  
Author(s):  
Kamesh Narasimhan ◽  
Samuel A Lambert ◽  
Ally WH Yang ◽  
Jeremy Riddell ◽  
Sanie Mnaimneh ◽  
...  

Caenorhabditis elegans is a powerful model for studying gene regulation, as it has a compact genome and a wealth of genomic tools. However, identification of regulatory elements has been limited, as DNA-binding motifs are known for only 71 of the estimated 763 sequence-specific transcription factors (TFs). To address this problem, we performed protein binding microarray experiments on representatives of canonical TF families in C. elegans, obtaining motifs for 129 TFs. Additionally, we predict motifs for many TFs that have DNA-binding domains similar to those already characterized, increasing coverage of binding specificities to 292 C. elegans TFs (∼40%). These data highlight the diversification of binding motifs for the nuclear hormone receptor and C2H2 zinc finger families and reveal unexpected diversity of motifs for T-box and DM families. Motif enrichment in promoters of functionally related genes is consistent with known biology and also identifies putative regulatory roles for unstudied TFs.


2010 ◽  
Vol 344 (1) ◽  
pp. 488
Author(s):  
Tanya L. Crum ◽  
Paul Huber ◽  
Peter G. Okkema
Keyword(s):  
T Box ◽  

2013 ◽  
Vol 70 (21) ◽  
pp. 4157-4168 ◽  
Author(s):  
Paul Huber ◽  
Tanya Crum ◽  
Lynn M. Clary ◽  
Tom Ronan ◽  
Adelaide V. Packard ◽  
...  
Keyword(s):  
T Box ◽  

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