scholarly journals A multivariate empirical Bayes statistic for replicated microarray time course data

2006 ◽  
Vol 34 (5) ◽  
pp. 2387-2412 ◽  
Author(s):  
Yu Chuan Tai ◽  
Terence P. Speed
Keyword(s):  
Empirical Bayes ◽  
Time Course ◽  
Microarray Time Course ◽  
Time Course Data

scholarly journals Generalized Correlation Coefficient for Non-Parametric Analysis of Microarray Time-Course Data

2017 ◽  
Vol 14 (2) ◽  
Author(s):  
Qihua Tan ◽  
Mads Thomassen ◽  
Mark Burton ◽  
Kristian Fredløv Mose ◽  
Klaus Ejner Andersen ◽  
...  
Keyword(s):  
Gene Expression ◽  
Correlation Coefficient ◽  
Parametric Analysis ◽  
Time Course ◽  
Expression Patterns ◽  
Gene Expression Patterns ◽  
Microarray Time Course ◽  
Time Course Data ◽  
Generalized Correlation ◽  
Non Parametric

AbstractModeling complex time-course patterns is a challenging issue in microarray study due to complex gene expression patterns in response to the time-course experiment. We introduce the generalized correlation coefficient and propose a combinatory approach for detecting, testing and clustering the heterogeneous time-course gene expression patterns. Application of the method identified nonlinear time-course patterns in high agreement with parametric analysis. We conclude that the non-parametric nature in the generalized correlation analysis could be an useful and efficient tool for analyzing microarray time-course data and for exploring the complex relationships in the omics data for studying their association with disease and health.

scholarly journals Correspondence analysis of microarray time-course data in case–control design

2004 ◽  
Vol 37 (5) ◽  
pp. 358-365 ◽  
Author(s):  
Qihua Tan ◽  
Klaus Brusgaard ◽  
Torben A. Kruse ◽  
Edward Oakeley ◽  
Brian Hemmings ◽  
...  
Keyword(s):  
Correspondence Analysis ◽  
Time Course ◽  
Control Design ◽  
Case Control ◽  
Microarray Time Course ◽  
Time Course Data

On Gene Ranking Using Replicated Microarray Time Course Data

Biometrics ◽  
2008 ◽  
Vol 65 (1) ◽  
pp. 40-51 ◽  
Author(s):  
Yu Chuan Tai ◽  
Terence P. Speed
Keyword(s):  
Time Course ◽  
Gene Ranking ◽  
Microarray Time Course ◽  
Time Course Data
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