Toward the Rapid Domestication of Perennial Grains: Developing Genetic and Genomic Resources for Intermediate Wheatgrass

2016 ◽  
pp. 227-241
Author(s):  
T Kantarski ◽  
L DeHaan ◽  
J Poland ◽  
J Borevitz
Keyword(s):  
Intermediate Wheatgrass ◽  
Genomic Resources ◽  
Perennial Grains

scholarly journals Genomic resources for the Neotropical tree genus Cedrela (Meliaceae) and its relatives

BMC Genomics ◽  
2019 ◽  
Vol 20 (1) ◽  
Author(s):  
Kristen N. Finch ◽  
F. Andrew Jones ◽  
Richard C. Cronn
Keyword(s):  
Genomic Resources ◽  
Neotropical Tree

scholarly journals Genetic and genomic resources to study natural variation in Brassica rapa

Plant Direct ◽  
2020 ◽  
Vol 4 (12) ◽  
Author(s):  
Ping Lou ◽  
Scott Woody ◽  
Kathleen Greenham ◽  
Robert VanBuren ◽  
Marivi Colle ◽  
...  
Keyword(s):  
Brassica Rapa ◽  
Natural Variation ◽  
Genomic Resources

scholarly journals De Novo SNP Discovery and Genotyping of Iranian Pimpinella Species Using ddRAD Sequencing

Agronomy ◽  
2021 ◽  
Vol 11 (7) ◽  
pp. 1342
Author(s):  
Shaghayegh Mehravi ◽  
Gholam Ali Ranjbar ◽  
Ghader Mirzaghaderi ◽  
Anita Alice Severn-Ellis ◽  
Armin Scheben ◽  
...  
Keyword(s):  
De Novo ◽  
Genetic Relationships ◽  
Nucleotide Polymorphisms ◽  
High Quality ◽  
Genomic Resources ◽  
High Quality Snps ◽  
The Family ◽  
Double Digestion ◽  
Flanking Sequences ◽  
Downstream Analysis

The species of Pimpinella, one of the largest genera of the family Apiaceae, are traditionally cultivated for medicinal purposes. In this study, high-throughput double digest restriction-site associated DNA sequencing technology (ddRAD-seq) was used to identify single nucleotide polymorphisms (SNPs) in eight Pimpinella species from Iran. After double-digestion with the enzymes HpyCH4IV and HinfI, a total of 334,702,966 paired-end reads were de novo assembled into 1,270,791 loci with an average of 28.8 reads per locus. After stringent filtering, 2440 high-quality SNPs were identified for downstream analysis. Analysis of genetic relationships and population structure, based on these retained SNPs, indicated the presence of three major groups. Gene ontology and pathway analysis were determined by using comparison SNP-associated flanking sequences with a public non-redundant database. Due to the lack of genomic resources in this genus, our present study is the first report to provide high-quality SNPs in Pimpinella based on a de novo analysis pipeline using ddRAD-seq. This data will enhance the molecular knowledge of the genus Pimpinella and will provide an important source of information for breeders and the research community to enhance breeding programs and support the management of Pimpinella genomic resources.

scholarly journals Genomic resources for lupins are coming of age

2021 ◽  
Author(s):  
Lars G. Kamphuis ◽  
Gagan Garg ◽  
Rhonda Foley ◽  
Karam B. Singh
Keyword(s):  
Coming Of Age ◽  
Genomic Resources

scholarly journals Bioinformatics Tools and Genomic Resources Available in Understanding the Structure and Function of Gossypium

10.5772/64325 ◽  
2016 ◽  
Author(s):  
Venkateswara R. Sripathi ◽  
Ramesh Buyyarapu ◽  
Siva P. Kumpatla ◽  
Abreeotta J. Williams ◽  
Seloame T. Nyaku ◽  
...  
Keyword(s):  
Structure And Function ◽  
Genomic Resources ◽  
Bioinformatics Tools ◽  
And Function
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