In areas of complex geology, prestack depth migration is often necessary if we are to produce an accurate image of the subsurface. Prestack depth migration requires an accurate interval velocity model. With few exceptions, the subsurface velocities are not known beforehand and should be estimated. When the velocity structure is complex, with significant lateral variations, reflection‐tomography methods are often an effective tool for improving the velocity estimate. Unfortunately, reflection tomography often converges slowly, to a model that is geologically unreasonable, or it does not converge at all. The large null space of reflection‐tomography problems often forces us to add a sparse parameterization of the model and/or regularization criteria to the estimation. Standard tomography schemes tend to create isotropic features in velocity models that are inconsistent with geology. These isotropic features result, in large part, from using symmetric regularization operators or from choosing a poor model parameterization. If we replace the symmetric operators with nonstationary operators that tend to spread information along structural dips, the tomography will produce velocity models that are geologically more reasonable. In addition, by forming the operators in helical 1D space and performing polynomial division, we apply the inverse of these space‐varying anisotropic operators. The inverse operators can be used as a preconditioner to a standard tomography problem, thereby significantly improving the speed of convergence compared with the typical regularized inversion problem. Results from 2D synthetic and 2D field data are shown. In each case, the velocity obtained improves the focusing of the migrated image.