scholarly journals Computational Fugue Analysis

2015 ◽  
Vol 39 (2) ◽  
pp. 77-96 ◽  
Author(s):  
Mathieu Giraud ◽  
Richard Groult ◽  
Emmanuel Leguy ◽  
Florence Levé
Keyword(s):  
Complete System ◽  
Ground Truth ◽  
Music Analysis ◽  
Automated Analysis ◽  
Western Music ◽  
Dynamic Visualization ◽  
Ground Truth Data ◽  
Dmitri Shostakovich

One of the pinnacles of form in classical Western music, the fugue is often used in the teaching of music analysis and composition. Fugues alternate between instances of a subject and other patterns and modulatory sections, called episodes. Musicological analyses are generally built on these patterns and sections. We have developed several algorithms to perform an automated analysis of a fugue, starting from a score in which all the voices are separated. By focusing on the diatonic similarities between pitch intervals, we detect subjects and countersubjects, as well as partial harmonic sequences inside the episodes. We also implemented tools to detect subject scale degrees, cadences, and pedals, as well as a method for segmenting the fugue into exposition and episodic parts. Our algorithms were tested on a corpus of 36 fugues by J. S. Bach and Dmitri Shostakovich. We provide formalized ground-truth data on this corpus as well as a dynamic visualization of the ground truth and of our computed results. The complete system showed acceptable or good results for about one half of the fugues tested, enabling us to depict their design.

scholarly journals Human vs. automated judgements of cross-cultural musical similarity

2018 ◽  
Author(s):  
Hideo Daikoku ◽  
Marino Kinoshita ◽  
Shinya Fujii ◽  
Patrick E. Savage
Keyword(s):  
Ground Truth ◽  
Cross Cultural ◽  
Automatic Analysis ◽  
Western Music ◽  
Great Success ◽  
Heritage Preservation ◽  
Ground Truth Data ◽  
The World ◽  
Near Future ◽  
Cultural Heritage Preservation

Although MIR has demonstrated great success in automatic analysis of Western music, no study has tested automatic algorithms against perceptual ground-truth data for a global musical sample. It thus remains unknown whether MIR algorithms can be meaningfully applied to automatically compare diverse music from around the world. In this pilot study, we aim to establish ground truth perceptual data on similarity between diverse musical recordings from across the world and use this perceptual data to test the accuracy of existing audio similarity algorithms. Preliminary results (two participants, ten recordings) suggest that perceptual ratings of musical similarity are significantly correlated between participants, but these similarities are only weakly correlated with similarities measured by an automatic algorithm. While this is consistent with more pessimistic assessments of MIR’s current ability to accommodate non-Western music, we hypothesize that collecting more perceptual data, comparing against more algorithms, and creating new algorithms based on more universal musical theories will enable meaningful automatic analysis of all the world’s music within the near future. This would have important implications for our understanding of cross-cultural music diversity, including applications to domains such as music recommendation and cultural heritage preservation.

scholarly journals Semi-automated Root Image Analysis (saRIA)

2019 ◽  
Vol 9 (1) ◽  
Author(s):  
Narendra Narisetti ◽  
Michael Henke ◽  
Christiane Seiler ◽  
Rongli Shi ◽  
Astrid Junker ◽  
...  
Keyword(s):  
Image Analysis ◽  
Image Segmentation ◽  
Root System ◽  
System Architecture ◽  
Ground Truth ◽  
Automated Analysis ◽  
Root System Architecture ◽  
Automated Image Analysis ◽  
Projection Area ◽  
Ground Truth Data

AbstractQuantitative characterization of root system architecture and its development is important for the assessment of a complete plant phenotype. To enable high-throughput phenotyping of plant roots efficient solutions for automated image analysis are required. Since plants naturally grow in an opaque soil environment, automated analysis of optically heterogeneous and noisy soil-root images represents a challenging task. Here, we present a user-friendly GUI-based tool for semi-automated analysis of soil-root images which allows to perform an efficient image segmentation using a combination of adaptive thresholding and morphological filtering and to derive various quantitative descriptors of the root system architecture including total length, local width, projection area, volume, spatial distribution and orientation. The results of our semi-automated root image segmentation are in good conformity with the reference ground-truth data (mean dice coefficient = 0.82) compared to IJ_Rhizo and GiAroots. Root biomass values calculated with our tool within a few seconds show a high correlation (Pearson coefficient = 0.8) with the results obtained using conventional, pure manual segmentation approaches. Equipped with a number of adjustable parameters and optional correction tools our software is capable of significantly accelerating quantitative analysis and phenotyping of soil-, agar- and washed root images.

scholarly journals A COMPLETE SYSTEM FOR CANDIDATE POLYPS DETECTION IN VIRTUAL COLONOSCOPY

2014 ◽  
Vol 28 (07) ◽  
pp. 1460014 ◽  
Author(s):  
MARCELO FIORI ◽  
PABLO MUSÉ ◽  
GUILLERMO SAPIRO
Keyword(s):  
Complete System ◽  
Virtual Colonoscopy ◽  
Ground Truth ◽  
False Positives ◽  
Computer Aided Detection ◽  
Surrounding Area ◽  
Polyp Detection ◽  
Polyp Size ◽  
Ground Truth Data ◽  
Colon Segmentation

We present a computer-aided detection pipeline for polyp detection in Computer tomographic colonography. The first stage of the pipeline consists of a simple colon segmentation technique that enhances polyps, which is followed by an adaptive-scale candidate polyp delineation, in order to capture the appropriate polyp size. In the last step, candidates are classified based on new texture and geometric features that consider both the information in the candidate polyp location and its immediate surrounding area. The system is tested with ground truth data, including flat and small polyps which are hard to detect even with optical colonoscopy. We achieve 100% sensitivity for polyps larger than 6 mm in size with just 0.9 false positives per case, and 93% sensitivity with 2.8 false positives per case for polyps larger than 3 mm in size.

scholarly journals Assessing Wildfire Burn Severity and Its Relationship with Environmental Factors: A Case Study in Interior Alaska Boreal Forest

2021 ◽  
Vol 13 (10) ◽  
pp. 1966
Author(s):  
Christopher W Smith ◽  
Santosh K Panda ◽  
Uma S Bhatt ◽  
Franz J Meyer ◽  
Anushree Badola ◽  
...  
Keyword(s):  
Boreal Forest ◽  
Ground Truth ◽  
Burn Severity ◽  
Classification Methods ◽  
Spectral Indices ◽  
Ground Truth Data ◽  
Burn Scar ◽  
Interior Alaska ◽  
Remote Sensing Methods ◽  
The Relationship

In recent years, there have been rapid improvements in both remote sensing methods and satellite image availability that have the potential to massively improve burn severity assessments of the Alaskan boreal forest. In this study, we utilized recent pre- and post-fire Sentinel-2 satellite imagery of the 2019 Nugget Creek and Shovel Creek burn scars located in Interior Alaska to both assess burn severity across the burn scars and test the effectiveness of several remote sensing methods for generating accurate map products: Normalized Difference Vegetation Index (NDVI), Normalized Burn Ratio (NBR), and Random Forest (RF) and Support Vector Machine (SVM) supervised classification. We used 52 Composite Burn Index (CBI) plots from the Shovel Creek burn scar and 28 from the Nugget Creek burn scar for training classifiers and product validation. For the Shovel Creek burn scar, the RF and SVM machine learning (ML) classification methods outperformed the traditional spectral indices that use linear regression to separate burn severity classes (RF and SVM accuracy, 83.33%, versus NBR accuracy, 73.08%). However, for the Nugget Creek burn scar, the NDVI product (accuracy: 96%) outperformed the other indices and ML classifiers. In this study, we demonstrated that when sufficient ground truth data is available, the ML classifiers can be very effective for reliable mapping of burn severity in the Alaskan boreal forest. Since the performance of ML classifiers are dependent on the quantity of ground truth data, when sufficient ground truth data is available, the ML classification methods would be better at assessing burn severity, whereas with limited ground truth data the traditional spectral indices would be better suited. We also looked at the relationship between burn severity, fuel type, and topography (aspect and slope) and found that the relationship is site-dependent.

scholarly journals Automatic Evaluation of Wheat Resistance to Fusarium Head Blight Using Dual Mask-RCNN Deep Learning Frameworks in Computer Vision

2020 ◽  
Vol 13 (1) ◽  
pp. 26
Author(s):  
Wen-Hao Su ◽  
Jiajing Zhang ◽  
Ce Yang ◽  
Rae Page ◽  
Tamas Szinyei ◽  
...  
Keyword(s):  
Fusarium Head Blight ◽  
Ground Truth ◽  
Wheat Breeding ◽  
Head Blight ◽  
Detection Rates ◽  
Ground Truth Data ◽  
Resistant Cultivars ◽  
Feature Pyramid ◽  
Rater Error ◽  
Wheat Lines

In many regions of the world, wheat is vulnerable to severe yield and quality losses from the fungus disease of Fusarium head blight (FHB). The development of resistant cultivars is one means of ameliorating the devastating effects of this disease, but the breeding process requires the evaluation of hundreds of lines each year for reaction to the disease. These field evaluations are laborious, expensive, time-consuming, and are prone to rater error. A phenotyping cart that can quickly capture images of the spikes of wheat lines and their level of FHB infection would greatly benefit wheat breeding programs. In this study, mask region convolutional neural network (Mask-RCNN) allowed for reliable identification of the symptom location and the disease severity of wheat spikes. Within a wheat line planted in the field, color images of individual wheat spikes and their corresponding diseased areas were labeled and segmented into sub-images. Images with annotated spikes and sub-images of individual spikes with labeled diseased areas were used as ground truth data to train Mask-RCNN models for automatic image segmentation of wheat spikes and FHB diseased areas, respectively. The feature pyramid network (FPN) based on ResNet-101 network was used as the backbone of Mask-RCNN for constructing the feature pyramid and extracting features. After generating mask images of wheat spikes from full-size images, Mask-RCNN was performed to predict diseased areas on each individual spike. This protocol enabled the rapid recognition of wheat spikes and diseased areas with the detection rates of 77.76% and 98.81%, respectively. The prediction accuracy of 77.19% was achieved by calculating the ratio of the wheat FHB severity value of prediction over ground truth. This study demonstrates the feasibility of rapidly determining levels of FHB in wheat spikes, which will greatly facilitate the breeding of resistant cultivars.

scholarly journals Classification of Cattle Behaviours Using Neck-Mounted Accelerometer-Equipped Collars and Convolutional Neural Networks

Sensors ◽  
2021 ◽  
Vol 21 (12) ◽  
pp. 4050
Author(s):  
Dejan Pavlovic ◽  
Christopher Davison ◽  
Andrew Hamilton ◽  
Oskar Marko ◽  
Robert Atkinson ◽  
...  
Keyword(s):  
Neural Network ◽  
Model Performance ◽  
Ground Truth ◽  
Practical Implementation ◽  
Ground Truth Data ◽  
Battery Lifetime ◽  
Implementation Challenges ◽  
Memory Footprint ◽  
Commercial Farms ◽  
Using Data

Monitoring cattle behaviour is core to the early detection of health and welfare issues and to optimise the fertility of large herds. Accelerometer-based sensor systems that provide activity profiles are now used extensively on commercial farms and have evolved to identify behaviours such as the time spent ruminating and eating at an individual animal level. Acquiring this information at scale is central to informing on-farm management decisions. The paper presents the development of a Convolutional Neural Network (CNN) that classifies cattle behavioural states (`rumination’, `eating’ and `other’) using data generated from neck-mounted accelerometer collars. During three farm trials in the United Kingdom (Easter Howgate Farm, Edinburgh, UK), 18 steers were monitored to provide raw acceleration measurements, with ground truth data provided by muzzle-mounted pressure sensor halters. A range of neural network architectures are explored and rigorous hyper-parameter searches are performed to optimise the network. The computational complexity and memory footprint of CNN models are not readily compatible with deployment on low-power processors which are both memory and energy constrained. Thus, progressive reductions of the CNN were executed with minimal loss of performance in order to address the practical implementation challenges, defining the trade-off between model performance versus computation complexity and memory footprint to permit deployment on micro-controller architectures. The proposed methodology achieves a compression of 14.30 compared to the unpruned architecture but is nevertheless able to accurately classify cattle behaviours with an overall F1 score of 0.82 for both FP32 and FP16 precision while achieving a reasonable battery lifetime in excess of 5.7 years.

A machine learning approach to estimate the strain energy absorption in expanded polystyrene foams

2021 ◽  
pp. 0021955X2110210
Author(s):  
Alejandro E Rodríguez-Sánchez ◽  
Héctor Plascencia-Mora
Keyword(s):  
Neural Network ◽  
Energy Absorption ◽  
Mechanical Energy ◽  
Compressive Loading ◽  
Ground Truth ◽  
Expanded Polystyrene ◽  
Polystyrene Foam ◽  
Stress Strain ◽  
Ground Truth Data ◽  
Expanded Polystyrene Foam

Traditional modeling of mechanical energy absorption due to compressive loadings in expanded polystyrene foams involves mathematical descriptions that are derived from stress/strain continuum mechanics models. Nevertheless, most of those models are either constrained using the strain as the only variable to work at large deformation regimes and usually neglect important parameters for energy absorption properties such as the material density or the rate of the applying load. This work presents a neural-network-based approach that produces models that are capable to map the compressive stress response and energy absorption parameters of an expanded polystyrene foam by considering its deformation, compressive loading rates, and different densities. The models are trained with ground-truth data obtained in compressive tests. Two methods to select neural network architectures are also presented, one of which is based on a Design of Experiments strategy. The results show that it is possible to obtain a single artificial neural networks model that can abstract stress and energy absorption solution spaces for the conditions studied in the material. Additionally, such a model is compared with a phenomenological model, and the results show than the neural network model outperforms it in terms of prediction capabilities, since errors around 2% of experimental data were obtained. In this sense, it is demonstrated that by following the presented approach is possible to obtain a model capable to reproduce compressive polystyrene foam stress/strain data, and consequently, to simulate its energy absorption parameters.

scholarly journals Multi-Temporal Arable Land Monitoring in Arid Region of Northwest China Using a New Extraction Index

2021 ◽  
Vol 13 (9) ◽  
pp. 5274
Author(s):  
Xinyang Yu ◽  
Younggu Her ◽  
Xicun Zhu ◽  
Changhe Lu ◽  
Xuefei Li
Keyword(s):  
Arable Land ◽  
Ground Truth ◽  
Northwest China ◽  
Hexi Corridor ◽  
Ground Truth Data ◽  
Land Protection ◽  
Promising Tool ◽  
Study Results ◽  
Multi Temporal ◽  
The Mean

Development of a high-accuracy method to extract arable land using effective data sources is crucial to detect and monitor arable land dynamics, servicing land protection and sustainable development. In this study, a new arable land extraction index (ALEI) based on spectral analysis was proposed, examined by ground truth data, and then applied to the Hexi Corridor in northwest China. The arable land and its change patterns during 1990–2020 were extracted and identified using 40 Landsat TM/OLI images acquired in 1990, 2000, 2010, and 2020. The results demonstrated that the proposed method can distinguish arable land areas accurately, with the User’s (Producer’s) accuracy and overall accuracy (kappa coefficient) exceeding 0.90 (0.88) and 0.89 (0.87), respectively. The mean relative error calculated using field survey data obtained in 2012 and 2020 was 0.169 and 0.191, respectively, indicating the feasibility of the ALEI method in arable land extracting. The study found that arable land area in the Hexi Corridor was 13217.58 km2 in 2020, significantly increased by 25.33% compared to that in 1990. At 10-year intervals, the arable land experienced different change patterns. The study results indicate that ALEI index is a promising tool used to effectively extract arable land in the arid area.

scholarly journals Automated analysis of 3D-echocardiography using spatially registered patient-specific CMR meshes

2021 ◽  
Vol 22 (Supplement_1) ◽  
Author(s):  
D Zhao ◽  
E Ferdian ◽  
GD Maso Talou ◽  
GM Quill ◽  
K Gilbert ◽  
...  
Keyword(s):  
New Zealand ◽  
Interobserver Variability ◽  
Ground Truth ◽  
Automated Analysis ◽  
3D Echocardiography ◽  
Training Data ◽  
Patient Specific ◽  
Manual Analysis ◽  
Lv Mass ◽  
3D Echo

Abstract Funding Acknowledgements Type of funding sources: Public grant(s) – National budget only. Main funding source(s): National Heart Foundation (NHF) of New Zealand Health Research Council (HRC) of New Zealand Artificial intelligence shows considerable promise for automated analysis and interpretation of medical images, particularly in the domain of cardiovascular imaging. While application to cardiac magnetic resonance (CMR) has demonstrated excellent results, automated analysis of 3D echocardiography (3D-echo) remains challenging, due to the lower signal-to-noise ratio (SNR), signal dropout, and greater interobserver variability in manual annotations. As 3D-echo is becoming increasingly widespread, robust analysis methods will substantially benefit patient evaluation.  We sought to leverage the high SNR of CMR to provide training data for a convolutional neural network (CNN) capable of analysing 3D-echo. We imaged 73 participants (53 healthy volunteers, 20 patients with non-ischaemic cardiac disease) under both CMR and 3D-echo (<1 hour between scans). 3D models of the left ventricle (LV) were independently constructed from CMR and 3D-echo, and used to spatially align the image volumes using least squares fitting to a cardiac template. The resultant transformation was used to map the CMR mesh to the 3D-echo image. Alignment of mesh and image was verified through volume slicing and visual inspection (Fig. 1) for 120 paired datasets (including 47 rescans) each at end-diastole and end-systole. 100 datasets (80 for training, 20 for validation) were used to train a shallow CNN for mesh extraction from 3D-echo, optimised with a composite loss function consisting of normalised Euclidian distance (for 290 mesh points) and volume. Data augmentation was applied in the form of rotations and tilts (<15 degrees) about the long axis. The network was tested on the remaining 20 datasets (different participants) of varying image quality (Tab. I). For comparison, corresponding LV measurements from conventional manual analysis of 3D-echo and associated interobserver variability (for two observers) were also estimated. Initial results indicate that the use of embedded CMR meshes as training data for 3D-echo analysis is a promising alternative to manual analysis, with improved accuracy and precision compared with conventional methods. Further optimisations and a larger dataset are expected to improve network performance. (n = 20) LV EDV (ml) LV ESV (ml) LV EF (%) LV mass (g) Ground truth CMR 150.5 ± 29.5 57.9 ± 12.7 61.5 ± 3.4 128.1 ± 29.8 Algorithm error -13.3 ± 15.7 -1.4 ± 7.6 -2.8 ± 5.5 0.1 ± 20.9 Manual error -30.1 ± 21.0 -15.1 ± 12.4 3.0 ± 5.0 Not available Interobserver error 19.1 ± 14.3 14.4 ± 7.6 -6.4 ± 4.8 Not available Tab. 1. LV mass and volume differences (means ± standard deviations) for 20 test cases. Algorithm: CNN – CMR (as ground truth). Abstract Figure. Fig 1. CMR mesh registered to 3D-echo.

scholarly journals Detection of heat pumps from smart meter and open data

2020 ◽  
Vol 3 (S1) ◽  
Author(s):  
Andreas Weigert ◽  
Konstantin Hopf ◽  
Nicolai Weinig ◽  
Thorsten Staake
Keyword(s):  
Heat Pump ◽  
Open Data ◽  
Ground Truth ◽  
Heat Pumps ◽  
Geographical Information ◽  
Weather Data ◽  
Smart Meters ◽  
Ground Truth Data ◽  
Thermal Reservoir ◽  
Grid Operators

Abstract Heat pumps embody solutions that heat or cool buildings effectively and sustainably, with zero emissions at the place of installation. As they pose significant load on the power grid, knowledge on their existence is crucial for grid operators, e.g., to forecast load and to plan grid operation. Further details, like the thermal reservoir (ground or air source) or the age of a heat pump installation renders energy-related services possible that utility companies can offer in the future (e.g., detecting wrongly calibrated installations, household energy efficiency checks). This study investigates the prediction of heat pump installations, their thermal reservoir and age. For this, we obtained a dataset with 397 households in Switzerland, all equipped with smart meters, collected ground truth data on installed heat pumps and enriched this data with weather data and geographical information. Our investigation replicates the state of the art in the area of heat pump detection and goes beyond it, as we obtain three major findings: First, machine learning can detect the existence of heat pumps with an AUC performance metric of 0.82, their heat reservoir with an AUC of 0.86, and their age with an AUC of 0.73. Second, heat pump existence can be better detected using data during the heating period than during summer. Third the number of training samples to detect the existence of heat pumps must not be necessarily large in terms of the number of training instances and observation period.

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