A Low-Rank Representation Method Regularized by Dual-Hypergraph Laplacian for Selecting Differentially Expressed Genes

2019 ◽  
Vol 84 (1) ◽  
pp. 21-33
Author(s):  
Xiu-Xiu Xu ◽  
Ling-Yun Dai ◽  
Xiang-Zhen Kong ◽  
Jin-Xing Liu
2017 ◽  
Vol 19 (3) ◽  
pp. 185
Author(s):  
Xiang Zhen Kong ◽  
Ling Yun Dai ◽  
Jin Xing Liu ◽  
Ya Xuan Wang ◽  
Sha Sha Yuan ◽  
...  

2017 ◽  
Vol 19 (3) ◽  
pp. 185 ◽  
Author(s):  
Xiu Xiu Xu ◽  
Ying Lian Gao ◽  
Jin Xing Liu ◽  
Ya Xuan Wang ◽  
Ling Yun Dai ◽  
...  

2017 ◽  
Vol 37 (5) ◽  
pp. 0510001 ◽  
Author(s):  
薛志祥 Xue Zhixiang ◽  
余旭初 Yu Xuchu ◽  
谭 熊 Tan Xiong ◽  
付琼莹 Fu Qiongying

Complexity ◽  
2019 ◽  
Vol 2019 ◽  
pp. 1-13 ◽  
Author(s):  
Yue Hu ◽  
Jin-Xing Liu ◽  
Ying-Lian Gao ◽  
Sheng-Jun Li ◽  
Juan Wang

In the big data era, sequencing technology has produced a large number of biological sequencing data. Different views of the cancer genome data provide sufficient complementary information to explore genetic activity. The identification of differentially expressed genes from multiview cancer gene data is of great importance in cancer diagnosis and treatment. In this paper, we propose a novel method for identifying differentially expressed genes based on tensor robust principal component analysis (TRPCA), which extends the matrix method to the processing of multiway data. To identify differentially expressed genes, the plan is carried out as follows. First, multiview data containing cancer gene expression data from different sources are prepared. Second, the original tensor is decomposed into a sum of a low-rank tensor and a sparse tensor using TRPCA. Third, the differentially expressed genes are considered to be sparse perturbed signals and then identified based on the sparse tensor. Fourth, the differentially expressed genes are evaluated using Gene Ontology and Gene Cards tools. The validity of the TRPCA method was tested using two sets of multiview data. The experimental results showed that our method is superior to the representative methods in efficiency and accuracy aspects.


2021 ◽  
Vol 15 ◽  
Author(s):  
Aimei Dong ◽  
Zhigang Li ◽  
Mingliang Wang ◽  
Dinggang Shen ◽  
Mingxia Liu

Multimodal heterogeneous data, such as structural magnetic resonance imaging (MRI), positron emission tomography (PET), and cerebrospinal fluid (CSF), are effective in improving the performance of automated dementia diagnosis by providing complementary information on degenerated brain disorders, such as Alzheimer's prodromal stage, i.e., mild cognitive impairment. Effectively integrating multimodal data has remained a challenging problem, especially when these heterogeneous data are incomplete due to poor data quality and patient dropout. Besides, multimodal data usually contain noise information caused by different scanners or imaging protocols. The existing methods usually fail to well handle these heterogeneous and noisy multimodal data for automated brain dementia diagnosis. To this end, we propose a high-order Laplacian regularized low-rank representation method for dementia diagnosis using block-wise missing multimodal data. The proposed method was evaluated on 805 subjects (with incomplete MRI, PET, and CSF data) from the real Alzheimer's Disease Neuroimaging Initiative (ADNI) cohort. Experimental results suggest the effectiveness of our method in three tasks of brain disease classification, compared with the state-of-the-art methods.


Author(s):  
Juan Wang ◽  
Jin-Xing Liu ◽  
Chun-Hou Zheng ◽  
Ya-Xuan Wang ◽  
Xiang-Zhen Kong ◽  
...  

Sign in / Sign up

Export Citation Format

Share Document